BAC Information

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BAC

Clone NameB6Ng01-024G18
Chromosome10 (Build37)
Map Location 39,076,538 - 39,220,789
singlet/doubletdoublet
Overlap geneFyn, LOC629337
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964
Downstream geneTraf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024G18.bB6Ng01-024G18.g
ACCDH856063DH856064
length8871,086
definitionDH856063|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G18, 5' end.DH856064|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,076,538 - 39,077,426)(39,219,688 - 39,220,789)
sequence
gaattcagtccaaatctgtgtcgtcagactccacccagcaacatgctaac
tcgtcatcctagtcagatcctggcacagaggctttgagcttctgtctatg
tagcagccttgtgtgtgtgtgtgttgatgtgtgtgtgcacgtcatgtgtg
caggtgcacttacacctgtgcagaggtcagaggttaatattgggcatcta
cctcagacactcttcacctatccttggttagactggctggccggtgctct
ctaggaatctacctctatatgccaccccaacactgggattgcagccctac
gtagccacagctaggtctttgcttcgttgctcggagtctgaactgaggtc
ctcacgcttgcccagaatgacagaacacttctcggactgagctgtctccc
cagaccttgcactttcttcatgtaaaacttactggtattattcacctgtc
ggaaccctccatggttttcacatagtgtataaactgaactccaagctagc
tttcataatggctctgtatgttctcacccatgtcttctttcagcctcacg
catcttcccctccctccataccagcctcctcctttctgctctttgcatca
ctttgtctggctactctagagcctttgcacacgaggtttcctcttgttgg
agtgtttcgccatgattcttcctaccccttacactaacaagtctaatttt
aaactcttcaaggacgtttctggtctcttccaatgccctccttcacttct
gtactgtaacccaattgctctcttcacagccatgtgtcgctacattctgt
ttttttcttatcagttgtaccttgccattatacttaaagatttgggagag
cagaacaaaacatttatcagcagctatcccacagtga
gaattcagttttgggatgagcacggtggtgcacgtctgatcccagcactc
tagaggccaaggcagctgaacctccgtgaatcctgcggccagtttagtct
acattgcaagtttcaagacaatcagggctacataatagagaaagcctgtc
ttaaaaaaacaaaaacaaaactttaaaaaaatctcccccaaaatagtttt
gacaatcctaaggcccaaattcatctctgataataattggagtcacagaa
gaggccaggagaaggggtgtggcacactgcccctcatcccactagacagc
cacagtggcggtttccagtgggcctatgaccgtacagctgaagaccacac
cttgagattttcttctatccagctgtttccatgtcatttcacctgtgggc
tgacagcaaatggctgtgaaaacccgagggtctttatcttttagatgacg
tctcccttcttgcatcctgtggcatagaaggagcatgcagtgtggtggaa
accagcttcaacagagagataactggctaaggaatggtgtggcatcatga
caacaagaaccttggaaggcatcattcaccctaactcatcagctttaacc
ttcaggcaagagaagcatggacatctgtcacgtgtgagcccttacatgga
agagggaaaggtgtaaggggcatggtcattctgttatgacaacctggact
taaaggaataggaggaagtgattataacacagaaatgaagcctggatccc
tggggcacatgtccatgtccctttaccactggccacaagctcctctgagc
aagaaaacaacaaccatgaattacgacacctgaacaagaacacgagcctt
ctcagcgctttaaatacgtctctttcagtgctcagagtgatcatacccag
gcattcaggtaaggacatcggcttacagactaaacacctgcccagattat
gtagtttgtaagcttcgtctgagtccacgtactacatcatgtcttcttac
tatacacttagccatgatgttcttttgagtggacactctgcattagtctc
tagtgcttcatacggtctatggactctagtttctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_39076538_39077426
seq2: B6Ng01-024G18.b_37_922

seq1  GAATTCAGTCCAAATCTGTGTCGTCAGACTCCACCCAGCAACATGCTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCAAATCTGTGTCGTCAGACTCCACCCAGCAACATGCTAAC  50

seq1  TCGTCATCCTAGTCAGATCCTGGCACAGAGGCTTTGAGCTTCTGTCTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCATCCTAGTCAGATCCTGGCACAGAGGCTTTGAGCTTCTGTCTATG  100

seq1  TAGCAGCCTTGTGTGTGTGTGTGTTGATGTGTGTGTGCACGTCATGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCTTGTGTGTGTGTGTGTTGATGTGTGTGTGCACGTCATGTGTG  150

seq1  CAGGTGCACTTACACCTGTGCAGAGGTCAGAGGTTAATATTGGGCATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCACTTACACCTGTGCAGAGGTCAGAGGTTAATATTGGGCATCTA  200

seq1  CCTCAGACACTCTTCACCTATCCTTGGTTAGACTGGCTGGCCGGTGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACACTCTTCACCTATCCTTGGTTAGACTGGCTGGCCGGTGCTCT  250

seq1  CTAGGAATCTACCTCTATATGCCACCCCAACACTGGGATTGCAGCCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATCTACCTCTATATGCCACCCCAACACTGGGATTGCAGCCCTAC  300

seq1  GTAGCCACAGCTAGGTCTTTGCTTCGTTGCTCGGAGTCTGAACTGAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCACAGCTAGGTCTTTGCTTCGTTGCTCGGAGTCTGAACTGAGGTC  350

seq1  CTCACGCTTGCCCAGAATGACAGAACACTTCTCGGACTGAGCTGTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCTTGCCCAGAATGACAGAACACTTCTCGGACTGAGCTGTCTCCC  400

seq1  CAGACCTTGCACTTTCTTCATGTAAAACTTACTGGTATTATTCACCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTGCACTTTCTTCATGTAAAACTTACTGGTATTATTCACCTGTC  450

seq1  GGAACCCTCCATGGTTTTCACATAGTGTATAAACTGAACTCCAAGCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTCCATGGTTTTCACATAGTGTATAAACTGAACTCCAAGCTAGC  500

seq1  TTTCATAATGGCTCTGTATGTTCTCACCCATGTCTTC-TTCAGCCTCACG  549
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTCATAATGGCTCTGTATGTTCTCACCCATGTCTTCTTTCAGCCTCACG  550

seq1  CATCTTCCCCTCCCTCCATACCAGCCTCCTCCTTTCTGCTCTTTGCATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCCCTCCCTCCATACCAGCCTCCTCCTTTCTGCTCTTTGCATCA  600

seq1  CTTTGTCTGGCTACTCTAGAGCCTTTGCACACGAGGTTTCCTCTTGTTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTGGCTACTCTAGAGCCTTTGCACACGAGGTTTCCTCTTGTTGG  650

seq1  AGTG-TTCGCCATGATTCTTCCTACCCCTTACACTAACAAGTCTAATTTT  698
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCGCCATGATTCTTCCTACCCCTTACACTAACAAGTCTAATTTT  700

seq1  AAACTCTTCAAAGAGGCGTTTCTGGCCTCTACCAATGCCCTCCTTCACAT  748
      ||||||||||| ||  ||||||||| |||| ||||||||||||||||| |
seq2  AAACTCTTCAAGGA--CGTTTCTGGTCTCTTCCAATGCCCTCCTTCACTT  748

seq1  CTGTACTGTAACCCAATTGCTCTCTTCACAGCCATGTGTCGCTACATTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGTACTGTAACCCAATTGCTCTCTTCACAGCCATGTGTCGCTACATTCT  798

seq1  GGTTTTTTTTCTTATCAGTTGTACCTTGCCATTATACTTAAAGATTTGGG  848
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  G--TTTTTTTCTTATCAGTTGTACCTTGCCATTATACTTAAAGATTTGGG  846

seq1  AGAGCAGAACATAGCATTTATTCAGCAGCTTACCCACAGTG  889
      ||||||||||| | |||||| |||||||||  |||||||||
seq2  AGAGCAGAACAAAACATTTA-TCAGCAGCTATCCCACAGTG  886

seq1: chr10_39219688_39220789
seq2: B6Ng01-024G18.g_66_1151 (reverse)

seq1  TAAGAAACTAAGATGTCATAGACACGTATGAAGCAACCTAGGAGACTAAA  50
      ||||||||| |||   ||||||| |||||||||||  ||| |||||| ||
seq2  TAAGAAACT-AGAGTCCATAGAC-CGTATGAAGCA--CTA-GAGACT-AA  44

seq1  TGCAGAGTGTCCCACTCAAAAG-ACATCATGGCTTAGTGTATAGTATAGA  99
      |||||||||| ||||||||||| ||||||||||| ||||||||||| |||
seq2  TGCAGAGTGT-CCACTCAAAAGAACATCATGGCTAAGTGTATAGTA-AGA  92

seq1  AGACATGAATGTAGTAACGTGGACTCAGACCGAAGCCTTACAAACTACAT  149
      ||||||| ||||||| ||||||||||||| ||||| ||||||||||||||
seq2  AGACATG-ATGTAGT-ACGTGGACTCAGA-CGAAG-CTTACAAACTACAT  138

seq1  AATCCGGGCAGGTGTTTTAGTTCTGTTAAGCCGATGTTCCTTACCTGAAT  199
      |||| ||||||||| ||||| |||| |||||||||| |||||||||||||
seq2  AATCTGGGCAGGTG-TTTAG-TCTG-TAAGCCGATG-TCCTTACCTGAAT  184

seq1  GCCTGGGTATGATCACTCTGAGCACTGAAAGAGACCGTATTTAAAGCGCT  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCCTGGGTATGATCACTCTGAGCACTGAAAGAGA-CGTATTTAAAGCGCT  233

seq1  GAGAAGGCTCGTGTTCTTGTTCAGGTGTCGTAATTCATGGTTGTTGTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCTCGTGTTCTTGTTCAGGTGTCGTAATTCATGGTTGTTGTTTT  283

seq1  CTTGCTCAGAGGAGCTTGTGGCCAGTGGTAAAGGGACATGGACATGTGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAGAGGAGCTTGTGGCCAGTGGTAAAGGGACATGGACATGTGCC  333

seq1  CCAGGGATCCAGGCTTCATTTCTGTGTTATAATCACTTCCTCCTATTCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATCCAGGCTTCATTTCTGTGTTATAATCACTTCCTCCTATTCCT  383

seq1  TTAAGTCCAGGTTGTCATAACAGAATGACCATGCCCCTTACACCTTTCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCCAGGTTGTCATAACAGAATGACCATGCCCCTTACACCTTTCCC  433

seq1  TCTTCCATGTAAGGGCTCACACGTGACAGATGTCCATGCTTCTCTTGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATGTAAGGGCTCACACGTGACAGATGTCCATGCTTCTCTTGCCT  483

seq1  GAAGGTTAAAGCTGATGAGTTAGGGTGAATGATGCCTTCCAAGGTTCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTAAAGCTGATGAGTTAGGGTGAATGATGCCTTCCAAGGTTCTTG  533

seq1  TTGTCATGATGCCACACCATTCCTTAGCCAGTTATCTCTCTGTTGAAGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGATGCCACACCATTCCTTAGCCAGTTATCTCTCTGTTGAAGCT  583

seq1  GGTTTCCACCACACTGCATGCTCCTTCTATGCCACAGGATGCAAGAAGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCACCACACTGCATGCTCCTTCTATGCCACAGGATGCAAGAAGGG  633

seq1  AGACGTCATCTAAAAGATAAAGACCCTCGGGTTTTCACAGCCATTTGCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTCATCTAAAAGATAAAGACCCTCGGGTTTTCACAGCCATTTGCTG  683

seq1  TCAGCCCACAGGTGAAATGACATGGAAACAGCTGGATAGAAGAAAATCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCACAGGTGAAATGACATGGAAACAGCTGGATAGAAGAAAATCTC  733

seq1  AAGGTGTGGTCTTCAGCTGTACGGTCATAGGCCCACTGGAAACCGCCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGGTCTTCAGCTGTACGGTCATAGGCCCACTGGAAACCGCCACT  783

seq1  GTGGCTGTCTAGTGGGATGAGGGGCAGTGTGCCACACCCCTTCTCCTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTCTAGTGGGATGAGGGGCAGTGTGCCACACCCCTTCTCCTGGC  833

seq1  CTCTTCTGTGACTCCAATTATTATCAGAGATGAATTTGGGCCTTAGGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTGACTCCAATTATTATCAGAGATGAATTTGGGCCTTAGGATT  883

seq1  GTCAAAACTATTTTGGGGGAGATTTTTTTAAAGTTTTGTTTTTGTTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAACTATTTTGGGGGAGATTTTTTTAAAGTTTTGTTTTTGTTTTTT  933

seq1  TAAGACAGGCTTTCTCTATTATGTAGCCCTGATTGTCTTGAAACTTGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGGCTTTCTCTATTATGTAGCCCTGATTGTCTTGAAACTTGCAA  983

seq1  TGTAGACTAAACTGGCCGCAGGATTCACGGAGGTTCAGCTGCCTTGGCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACTAAACTGGCCGCAGGATTCACGGAGGTTCAGCTGCCTTGGCCT  1033

seq1  CTAGAGTGCTGGGATCAGACGTGCACCACCGTGCTCATCCCAAAACTGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTGCTGGGATCAGACGTGCACCACCGTGCTCATCCCAAAACTGAA  1083

seq1  TTC  1102
      |||
seq2  TTC  1086