BAC Information

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BAC

Clone NameB6Ng01-024M24
Chromosome10 (Build37)8 (Build37)
Map Location 24,296,268 - 24,297,29986,733,980 - 86,734,138
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537
Downstream geneCtgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024M24.bB6Ng01-024M24.g
ACCDH856335DH856336
length1,069597
definitionDH856335|Mus musculus domesticus DNA, BAC clone: B6Ng01-024M24, 5' end.DH856336|Mus musculus domesticus DNA, BAC clone: B6Ng01-024M24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,296,268 - 24,297,299)(86,733,980 - 86,734,138)
sequence
gaattccatgcaatttcaatttcaatttaaatctataacaagatgtgtgg
tagctgaaaaataagtccccatgtttcaaattaccaagatactgggattt
tttaaaatctgatttctgcctaacttcctaccattggaaaagctcaggga
cttttaatacagcaggagggcgggaaagtgagtgtcagccaatcaaagaa
cggaaaggaaaaaggagaagagaagacaggagaaagcgcaatgagcagag
acctgcccctgagtcaagcagctctgaagtgaaaaccagaacaagaacag
acagggaactaaaccatgacccatcagtgctctagaagtctgcactgttt
ccttcaggaggagaacttgatccaggcagttctctcctccaggatcctgt
tctccattctctcttcaacagttgtcaagtttaagtgaagagcttcagtg
tttaaggaaagcatactaccctgttaaatttaaagttaaaataataagct
ccccatcttccagattgccttgaaaagacaaaatgtttttgtacctgtgc
agggaaactaaacagggtctgtgcctgtttgcccgacgtattcaagtggg
tctgggacagatgtgactcaccaaggagccagtaaggggctcccttttcc
agagaaccgtgggcctagaggttggtgtgggaatcccggggaacctgggg
gtggggaaaggcttttttttttttttccattctggcctccatattttttt
ggacccaatcttaaagaatcaaaaacttctatatttctgatgaacacaac
ccaccatgttgcaagaaggttccaaatctttaatgctagtaaatctaggc
tccattctagaatatctgtcttgaattattttcaatggctctggaagttc
ttccgctggtgacattttggaccattattttctctggcttctttgtaatc
agagacatgatttaagtcttattctaaaacatcattatctatggccgtct
ggtgggaatgttgtctcttatatccaagattctaagtcatggccttcctg
ttataagcatatgttgaaa
gaattcctgaaagtaaatactaagaaaacatatctggcactaacaagtgg
gcaaatgaactgaagatgaaatcagtttagaaaaaagaaaacagaaaaac
aaatggccaataacagttttaaaacgtgttctaggtctctatcagggaaa
tacaaatgaaaactactttgaaatagcctctcatcccagtcaccacgacc
atcaacaaacctgacagtaagtgctggagccggtgtggagagaagggaag
gaactgttattcatggttagtaaaagtgcaaattaatgcaaccagtagag
atatcagtttggagatttctcaaaaaatttaaaaatagaactactatata
acccagctatcatactcttgggcatatacccagagaacttcatacactac
tgtagaaatatttacacccatgtgttattgctactttattatttatagca
aagaactttattaatctagatgttcatgaagaaataaaagaataatgaaa
atttgcgtgcttttctctttccccaagtgtctgtgcatacgtgcgtgagt
gcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_24296268_24297299
seq2: B6Ng01-024M24.b_43_1111

seq1  GAATTCCATGCAATTTCAATTTCAATTTAAATCTATAACAAGATGTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCAATTTCAATTTCAATTTAAATCTATAACAAGATGTGTGG  50

seq1  TAGCTGAAAAATAAGTCCCCATGTTTCAAATTACCAAGATACTGGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAAAAATAAGTCCCCATGTTTCAAATTACCAAGATACTGGGATTT  100

seq1  TTTAAAATCTGATTTCTGCCTAACTTCCTACCATTGGAAAAGCTCAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATCTGATTTCTGCCTAACTTCCTACCATTGGAAAAGCTCAGGGA  150

seq1  CTTTTAATACAGCAGGAGGGCGGGAAAGTGAGTGTCAGCCAATCAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATACAGCAGGAGGGCGGGAAAGTGAGTGTCAGCCAATCAAAGAA  200

seq1  CGGAAAGGAAAAAGGAGAAGAGAAGACAGGAGAAAGCGCAATGAGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAGGAAAAAGGAGAAGAGAAGACAGGAGAAAGCGCAATGAGCAGAG  250

seq1  ACCTGCCCCTGAGTCAAGCAGCTCTGAAGTGAAAACCAGAACAAGAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCCTGAGTCAAGCAGCTCTGAAGTGAAAACCAGAACAAGAACAG  300

seq1  ACAGGGAACTAAACCATGACCCATCAGTGCTCTAGAAGTCTGCACTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAACTAAACCATGACCCATCAGTGCTCTAGAAGTCTGCACTGTTT  350

seq1  CCTTCAGGAGGAGAACTTGATCCAGGCAGTTCTCTCCTCCAGGATCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGAGGAGAACTTGATCCAGGCAGTTCTCTCCTCCAGGATCCTGT  400

seq1  TCTCCATTCTCTCTTCAACAGTTGTCAAGTTTAAGTGAAGAGCTTCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTCTCTCTTCAACAGTTGTCAAGTTTAAGTGAAGAGCTTCAGTG  450

seq1  TTTAAGGAAAGCATACTACCCTGTTAAATTTAAAGTTAAAATAATAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAAAGCATACTACCCTGTTAAATTTAAAGTTAAAATAATAAGCT  500

seq1  CCCCATCTTCCAGATTGCCTTGAAAAGAC-AAATG-TTTTGTACCTGTGC  548
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  CCCCATCTTCCAGATTGCCTTGAAAAGACAAAATGTTTTTGTACCTGTGC  550

seq1  AGG--AACT-AACAGGGTCTGTGCCTGTTTG-CCGACGTA-TCAAGT-GG  592
      |||  |||| ||||||||||||||||||||| |||||||| |||||| ||
seq2  AGGGAAACTAAACAGGGTCTGTGCCTGTTTGCCCGACGTATTCAAGTGGG  600

seq1  TCT-GGACAGATGTGACTCACCAA-GAG-CAGT-AGGGGCTCTC-TTTCC  637
      ||| |||||||||||||||||||| ||| |||| |||||||| | |||||
seq2  TCTGGGACAGATGTGACTCACCAAGGAGCCAGTAAGGGGCTCCCTTTTCC  650

seq1  AGAGAACCGTGGCCTTAGAGGTT-GTGTGGTATACC--GTGTACCTGTGG  684
      |||||||||||| | |||||||| |||||| |  ||  | | ||||| ||
seq2  AGAGAACCGTGGGCCTAGAGGTTGGTGTGGGAATCCCGGGGAACCTGGGG  700

seq1  --TGGGTAATGCTTTTTTTTTTTTT--CATTCT-GCTTCTATATTTTTTT  729
         ||| || |||||||||||||||  |||||| || || ||||||||||
seq2  GTGGGGAAAGGCTTTTTTTTTTTTTTCCATTCTGGCCTCCATATTTTTTT  750

seq1  -GACCC-ATCTTATAG-ATC-AAAACTTCTATA-TTCTGATGAACACAAC  774
       ||||| |||||| || ||| |||||||||||| ||||||||||||||||
seq2  GGACCCAATCTTAAAGAATCAAAAACTTCTATATTTCTGATGAACACAAC  800

seq1  C--ACATG-TGCAAG-ATGTTCCAGATCTTTAATGCTAAGTAATCTA-GC  819
      |   |||| |||||| | |||||| |||||||||||||   |||||| ||
seq2  CCACCATGTTGCAAGAAGGTTCCAAATCTTTAATGCTAGTAAATCTAGGC  850

seq1  TCCATTCTAGAATATCTG-CTTG-ATTA-TTTCAAT-GCTCT-GAAGTTC  864
      |||||||||||||||||| |||| |||| ||||||| ||||| |||||||
seq2  TCCATTCTAGAATATCTGTCTTGAATTATTTTCAATGGCTCTGGAAGTTC  900

seq1  TTCGTCTTGTG-TACTTTTGTCCATTATTTTCTCTGTCTTCTTCTGTTAA  913
      |||  || |||  | ||| | ||||||||||||||| |||||| || |||
seq2  TTCCGCTGGTGACATTTTGGACCATTATTTTCTCTGGCTTCTT-TG-TAA  948

seq1  TCAGAGACATGA-TTAAGTCTTTATCTAAAAACCATCA-TATCTAT-GCC  960
      |||||||||||| |||||||||  |||||||  ||||| ||||||| |||
seq2  TCAGAGACATGATTTAAGTCTTATTCTAAAA--CATCATTATCTATGGCC  996

seq1  GTCT-GTGGGATTGTTGTCTCTTTAAATCCAAGATTCT-AGTCAT-GCCT  1007
      |||| |||||| ||||||||| ||| |||||||||||| |||||| ||||
seq2  GTCTGGTGGGAATGTTGTCTC-TTATATCCAAGATTCTAAGTCATGGCCT  1045

seq1  TCCTGTTTTATAGCATATGTTGAAA  1032
      ||||||| || ||||||||||||||
seq2  TCCTGTTATA-AGCATATGTTGAAA  1069

seq1: chr8_86733980_86734138
seq2: B6Ng01-024M24.g_609_666 (reverse)

seq1  CACACACACACACACACACACACACACAGGGCTTAAGGACGGGCACATAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCGAGCACAGACAGACACGCGCGCATGCACACACACACGCACGCGCGCGC  100
                                     |||||||            
seq2  -------------------------------CACACAC------------  7

seq1  GCCCGTCTACACACACACACACACACACACACACACACACACACACGCAC  150
              ||||||||||||||||||||||||||||||||||||||||||
seq2  --------ACACACACACACACACACACACACACACACACACACACGCAC  49

seq1  GCACGCACG  159
       ||||||||
seq2  TCACGCACG  58