BAC Information

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BAC

Clone NameB6Ng01-025D03
Chromosome10 (Build37)
Map Location 66,420,957 - 66,589,120
singlet/doubletdoublet
Overlap geneReep3
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneJmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1, Arid5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025D03.bB6Ng01-025D03.g
ACCDH856617DH856618
length1,0671,160
definitionDH856617|Mus musculus domesticus DNA, BAC clone: B6Ng01-025D03, 5' end.DH856618|Mus musculus domesticus DNA, BAC clone: B6Ng01-025D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,420,957 - 66,422,037)(66,587,938 - 66,589,120)
sequence
gaattcaggtagcgaggcttgcggtcggccaccatgactattaagcaggt
ctagggcatcatcgtttaaatcgtttaaaaacaaggtcccgggtggaaag
ctgcaaaagtgagcatcgtgcagggacactcagagtgtgggaaaagctgg
tcaagtcaagtttcatcactaccctgccggggctggaccacaggaaagat
gccgataaacttccaggtaatccttatgtgcatatcaatgatctgaaaag
ggagaaagcccaagttcagcagttgagtgaagctcacagtatgccttcgg
gcacatcacattaaatgcaccttcaaaatgtcctttcatttggctacagc
tgccacctttttggaaaaaaaaaaaaagaatcccgagacacttctagaag
catgcatgtacgtctaccatctttatgatgtaaagctaagcgcgtccatg
agcacgcgtgtctaccatcttttcttccccaactgagcatgcgtgggagt
gtgcccacctcctctgaactccctgaataaaacttccatgcctagctggg
cggcggtggcacacacctttaatcccagcacttgggaggcagaggcaggt
ggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacg
gccagggctattccgaaaccctgtctcggaaaaacaacaacaacaaaaaa
caaaaaaactaacaaacaaaaaaaacaaccaaacagccaaacaaaaaaga
accatgccttcctttgttctggaggactatgctttataaatgagtactgc
acctcctcacctgctacaggtaccaagctttctccccttttttgatctat
tgcccaggcctgttttagctttgtgctgtggaggcttggatttttaaacc
tttgttgattgtgtgtcgctctgcaaagaatggtatccacgatgcttgca
acctcactggggtaggattccttggctcacagtttgtacacaccttaagc
catctcttagttagggattctttgcagcatgaacacttgaccaaagaagt
gtggagcaagggtcatt
gaattcctcttctgatcgctcctcagttctcacaggcaagtctctctttc
aagatagcagtgagaagtttgacgaccgctatgcttgtattttaaagatc
tgtgaaaacgggaatcaaaattcaatctgccgttttccagggattatcat
cttcaaaaattcatctaatcctataaaaatcttttcctcccccccatgct
ttctgaaaacccttacaatagcactgagtgcttacaataaatacaaaaga
catatctgtagaccatttaaactaaactgttaaagctacagacagacagt
ggcggtgggagagttggaaactctcaaagtcagttgaatagatcagctca
gggctgaagagatggctctgcggttaagactgctctcccagaggtcctga
gttcaattcccagcaaccacatggtggctcacaaccatctataatgggca
tctgatgctaggaaaactgcacaaatctgcatgctgtcggctctggattc
cttcattcccacctaaggttagtaagcccaataaaacaagccactgaaag
agtgcagcacatataaagatgtttaaacggagtctcatattcaaatacca
accatcagtgatctccctgctttataacttgcagcacaaagtaatcatta
aaggaaattggggctggggacagacggtgctgctgggtggcaaagcactt
gcctacttggtgggaaggtctgggttggggtcccagtgtgggtgaagtct
ttttgttgttgtttctcttttattttttaaagaagactgcttaatcccca
actgtcaatgacaccatactactacaaggaaaacagtccattaaaaagca
tgtaaagacaacgaaagcaacactctggagagaacagctttcccaggcca
cagatccccacagcagcatttcttactagctaatcatggggcttatctga
gcgcacgctcttgcttttctcagtgtatgccaccacagcagctttaatac
atttattgtacttgagattacagctcaaattttctctacacccatactac
aggcgacattttagtttatgctagtcttactgagacctgaattttttttt
ttccaaagaatagacctttaaggttttgtatgttttgtttcaattccttg
ctggtttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_66420957_66422037
seq2: B6Ng01-025D03.b_43_1109

seq1  GAATTCAGGTAGCGAGGCTTGCGGTCGGCCACCATGACTATTAAGCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTAGCGAGGCTTGCGGTCGGCCACCATGACTATTAAGCAGGT  50

seq1  CTAGGGCATCATCGTTTAAATCGTTTAAAAACAAGGTCCCGGGTGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCATCATCGTTTAAATCGTTTAAAAACAAGGTCCCGGGTGGAAAG  100

seq1  CTGCAAAAGTGAGCATCGTGCAGGGACACTCAGAGTGTGGGAAAAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAAGTGAGCATCGTGCAGGGACACTCAGAGTGTGGGAAAAGCTGG  150

seq1  TCAAGTCAAGTTTCATCACTACCCTGCCGGGGCTGGACCACAGGAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCAAGTTTCATCACTACCCTGCCGGGGCTGGACCACAGGAAAGAT  200

seq1  GCCGATAAACTTCCAGGTAATCCTTATGTGCATATCAATGATCTGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATAAACTTCCAGGTAATCCTTATGTGCATATCAATGATCTGAAAAG  250

seq1  GGAGAAAGCCCAAGTTCAGCAGTTGAGTGAAGCTCACAGTATGCCTTCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGCCCAAGTTCAGCAGTTGAGTGAAGCTCACAGTATGCCTTCGG  300

seq1  GCACATCACATTAAATGCACCTTCAAAATGTCCTTTCATTTGGCTACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCACATTAAATGCACCTTCAAAATGTCCTTTCATTTGGCTACAGC  350

seq1  TGCCACCTTTTTGGAAAAAAAAAAAAAGAATCCCGAGACACTTCTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTTTTTGGAAAAAAAAAAAAAGAATCCCGAGACACTTCTAGAAG  400

seq1  CATGCATGTACGTCTACCATCTTTATGATGTAAAGCTAAGCGCGTCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGTACGTCTACCATCTTTATGATGTAAAGCTAAGCGCGTCCATG  450

seq1  AGCACGCGTGTCTACCATCTTTTCTTCCCCAACTGAGCATGCGTGGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGCGTGTCTACCATCTTTTCTTCCCCAACTGAGCATGCGTGGGAGT  500

seq1  GTGCCCACCTCCTCTGAACTCCCTGAATAAAACTTCCATGCCTAGCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCACCTCCTCTGAACTCCCTGAATAAAACTTCCATGCCTAGCTGGG  550

seq1  CGGCGGTGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGGTGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGT  600

seq1  GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACG  650

seq1  GCCAGGGCTATTCCGAAACCCTGTCTCGGAAAAACAACAACAACAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTATTCCGAAACCCTGTCTCGGAAAAACAACAACAACAAAAAA  700

seq1  CAAAAAAACAAACAAACAAAAAAAACAACCAAACAGCCAAACAAAAAAGA  750
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACTAACAAACAAAAAAAACAACCAAACAGCCAAACAAAAAAGA  750

seq1  ACCATGCCTTCCTTTGTTCATGGAGGACTATGCTTTAGAAATGAGTACTG  800
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  ACCATGCCTTCCTTTGTTC-TGGAGGACTATGCTTTATAAATGAGTACTG  799

seq1  CACCTCCTCACCTGCTACAGGTACCAAGCTTTCTCCCCTTTTTTGATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTCACCTGCTACAGGTACCAAGCTTTCTCCCCTTTTTTGATCTA  849

seq1  TTGCCCAGGCCTGTTTTAGCTTTGTGCTGTGGAGGCTT-GATTTTTAAAC  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGCCCAGGCCTGTTTTAGCTTTGTGCTGTGGAGGCTTGGATTTTTAAAC  899

seq1  CTTTGTTGATTGTGTGTCGCTTCTGCAGAGAAGGGTCATCCACGATGC-T  948
      |||||||||||||||||||| |||||| |||| ||| ||||||||||| |
seq2  CTTTGTTGATTGTGTGTCGC-TCTGCAAAGAATGGT-ATCCACGATGCTT  947

seq1  GCAACCTCACT-GTGTAGGATTCCATTGCATCAGCAGTTTTGTAAACAAA  997
      ||||||||||| | |||||||||| |||  ||| ||| |||||  ||| |
seq2  GCAACCTCACTGGGGTAGGATTCC-TTGGCTCA-CAG-TTTGT--ACACA  992

seq1  CCTAAAGCCATCTCTTAGTTAGGGATTCTATTGCAGCAATGAAACACCAT  1047
      ||| ||||||||||||||||||||||||| ||||||| ||| |||| | |
seq2  CCTTAAGCCATCTCTTAGTTAGGGATTCT-TTGCAGC-ATG-AACA-CTT  1038

seq1  GACCAAAAGCAAGTTGGGGAGCAAGGGGCTCATT  1081
      |||||||   ||| || ||||||||||  |||||
seq2  GACCAAA--GAAG-TGTGGAGCAAGGG--TCATT  1067

seq1: chr10_66587938_66589120
seq2: B6Ng01-025D03.g_66_1225 (reverse)

seq1  AACAAAACGCCAGCAAAGAAATTGAAAAACAAAACAATACAAAAACTTTT  50
      ||||||   ||||| ||| |||||  ||||||||| |||| ||||| || 
seq2  AACAAA---CCAGC-AAGGAATTG--AAACAAAAC-ATAC-AAAACCTTA  42

seq1  AAGGTCTATTCTTTTGGGGAAAAAAAAAAAATCAAGTTTCTCAAGGTAGA  100
      ||||||||||||||   ||||||||||||| ||| || ||   ||  |||
seq2  AAGGTCTATTCTTT---GGAAAAAAAAAAATTCAGGTCTC---AGTAAGA  86

seq1  CTAGCATAAAACCTAAATGTCGGCTGTAGTATTGGGGTTGTAGGAGAAAA  150
      ||||||| ||||  |||||||| |||||||||   || |||| |||||||
seq2  CTAGCAT-AAACTAAAATGTCGCCTGTAGTAT---GGGTGTA-GAGAAAA  131

seq1  TTTGAGCTGTAATTCTCAAGTACATTAAATGTATTAAAGCTGCCTGTGGT  200
      |||||||||||| ||||||||||| ||||||||||||||||| |||||||
seq2  TTTGAGCTGTAA-TCTCAAGTACAATAAATGTATTAAAGCTG-CTGTGGT  179

seq1  GGCATACACTTGAGAAAAGCAAGAGCGTGCGCTCAGATAAGCCCCATGAT  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACAC-TGAGAAAAGCAAGAGCGTGCGCTCAGATAAGCCCCATGAT  228

seq1  TAGCTAGTAAGAAATGCTGCTGTGGGGATCTGTGGCCTGGGAAAGCTGTT  300
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGCTAGTAAGAAATGCTGCTGTGGGGATCTGTGGCCTGGGAAAGCTG-T  277

seq1  TCTCTCCAGAGTGTTGCTTTCGTTGTCTTTACATGCTTTTTAATGGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGAGTGTTGCTTTCGTTGTCTTTACATGCTTTTTAATGGACTG  327

seq1  TTTTCCTTGTAGTAGTATGGTGTCATTGACAGTTGGGGATTAAGCAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGTAGTAGTATGGTGTCATTGACAGTTGGGGATTAAGCAGTCT  377

seq1  TCTTTAAAAAATAAAAGAGAAACAACAACAAAAAGACTTCACCCACACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAAATAAAAGAGAAACAACAACAAAAAGACTTCACCCACACTG  427

seq1  GGACCCCAACCCAGACCTTCCCACCAAGTAGGCAAGTGCTTTGCCACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCAACCCAGACCTTCCCACCAAGTAGGCAAGTGCTTTGCCACCCA  477

seq1  GCAGCACCGTCTGTCCCCAGCCCCAATTTCCTTTAATGATTACTTTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACCGTCTGTCCCCAGCCCCAATTTCCTTTAATGATTACTTTGTGC  527

seq1  TGCAAGTTATAAAGCAGGGAGATCACTGATGGTTGGTATTTGAATATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTTATAAAGCAGGGAGATCACTGATGGTTGGTATTTGAATATGAG  577

seq1  ACTCCGTTTAAACATCTTTATATGTGCTGCACTCTTTCAGTGGCTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGTTTAAACATCTTTATATGTGCTGCACTCTTTCAGTGGCTTGTTT  627

seq1  TATTGGGCTTACTAACCTTAGGTGGGAATGAAGGAATCCAGAGCCGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGCTTACTAACCTTAGGTGGGAATGAAGGAATCCAGAGCCGACAG  677

seq1  CATGCAGATTTGTGCAGTTTTCCTAGCATCAGATGCCCATTATAGATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGATTTGTGCAGTTTTCCTAGCATCAGATGCCCATTATAGATGGT  727

seq1  TGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGGAGA  777

seq1  GCAGTCTTAACCGCAGAGCCATCTCTTCAGCCCTGAGCTGATCTATTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTAACCGCAGAGCCATCTCTTCAGCCCTGAGCTGATCTATTCAA  827

seq1  CTGACTTTGAGAGTTTCCAACTCTCCCACCGCCACTGTCTGTCTGTAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTGAGAGTTTCCAACTCTCCCACCGCCACTGTCTGTCTGTAGCT  877

seq1  TTAACAGTTTAGTTTAAATGGTCTACAGATATGTCTTTTGTATTTATTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTTTAGTTTAAATGGTCTACAGATATGTCTTTTGTATTTATTGT  927

seq1  AAGCACTCAGTGCTATTGTAAGGGTTTTCAGAAAGCATGGGGGGGAGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCAGTGCTATTGTAAGGGTTTTCAGAAAGCATGGGGGGGAGGAA  977

seq1  AAGATTTTTATAGGATTAGATGAATTTTTGAAGATGATAATCCCTGGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTATAGGATTAGATGAATTTTTGAAGATGATAATCCCTGGAAA  1027

seq1  ACGGCAGATTGAATTTTGATTCCCGTTTTCACAGATCTTTAAAATACAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGATTGAATTTTGATTCCCGTTTTCACAGATCTTTAAAATACAAG  1077

seq1  CATAGCGGTCGTCAAACTTCTCACTGCTATCTTGAAAGAGAGACTTGCCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCGGTCGTCAAACTTCTCACTGCTATCTTGAAAGAGAGACTTGCCT  1127

seq1  GTGAGAACTGAGGAGCGATCAGAAGAGGAATTC  1183
      |||||||||||||||||||||||||||||||||
seq2  GTGAGAACTGAGGAGCGATCAGAAGAGGAATTC  1160