BAC Information

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BAC

Clone NameB6Ng01-025E21
Chromosome10 (Build37)
Map Location 4,909,297 - 4,910,458
singlet/doubletsinglet
Overlap geneSyne1
Upstream geneLOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1
Downstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025E21.bB6Ng01-025E21.g
ACCDH856695DH856696
length1,149828
definitionDH856695|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E21, 5' end.DH856696|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgccaacaatgtggaactgcaatctaatcagaagaacacaacg
cataaacccaaactgagagttcccaaaaatgactaactagcagaattaaa
agtgtcaaaggtcatgaaacactagaaagcatggagacttgctgtagagt
aagagacaatgagatgaatggtgtggtgttggattgaatcctaggacaat
ggtacacagaccatgctctatactttcattaacgatggtgcattagttta
aattttcttactttgataatagttccatcattacatatgttctttatgtt
tgtttgttattgtgtttttgagacagtgtttctctgtgtagtgctggctt
ctagaactcacgctgtagacaaggctggccttgaactcagagaactgact
gcctctgcctcctgattgctgagattaaaggcatgtgtcaccactgccag
gctcatttcctatgctcttaacctggagggagttaagtaaagtgaactgt
ggtctcctttttgcaacatttctgtaaatctaaatttgtttactcgactg
cctcatgtagtacagacagcgtgcagttataccccaaagacaacagttag
aaagtcagtagacccaagctttctctccagtgtttccatttcatttcatt
tcttaccttccttccttcaaggaatttgagtgcggtgccaatgttagcca
cagcatgaatacgcttcacccggtgtccttgttcacaaggctggggaaag
aaacccgtagcagtgaggacaggtatgaccattaaaaggcttcagattcc
atgcagctgtgttaacatatatattgaagagacttgaagagcaaccacca
tgactccacctcagggagggaagcaagtgtgtaaaagcgtgtcatcccag
cagtacttgcgagacatacggttctcatagaagttcaagatcagcagatt
atcttcctgcagagtgttttccagctgatttccagagttaaagttcaaca
aattctcatgctgtctaagacacagtcactctttcatggcaagacatatt
tctacgaaagtgttttggtcagtcataccctttctttagctatgaagaca
tgcaggatttgaccatactagtccctcctaatttgatgaaccaaaaatt

gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccat
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattaccgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttccttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acatttggtgcactatatttgatgacatttatgctgattggaccaagtga
gcaggaaagtagcaaaccactttggactcattggtaacacatatgcgtat
cagaggatggggaaataaaatccaaccaaaaattcaagggaccatctacc
tcagtgaaattcttaggagtccagtggtgtggggcatggcagagatattt
ccttctaaggtgaaagataagttattggaccctggcccctcctacaaccc
aaaaaagaagcacaacgtttagtgggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_4909297_4910458
seq2: B6Ng01-025E21.b_47_1195 (reverse)

seq1  AATTTTTGGTCATTCAAATTAAGAAAGGACACTAGTAATGGTCAATATCC  50
      ||||||||||   |||||||| ||   |  |||||| |||||||| ||||
seq2  AATTTTTGGTTCATCAAATTAGGA---GGGACTAGT-ATGGTCAA-ATCC  45

seq1  TTGCATGTCCTCATAGCTAAAGAAAAGGGTATGACTGACCAAAAACACTT  100
       |||||||| |||||||||||| ||||||||||||||||| ||||||| |
seq2  -TGCATGTCTTCATAGCTAAAG-AAAGGGTATGACTGACC-AAAACAC-T  91

seq1  TTCGTAGAAATATGTCTTGCCATGAAAGAGTGACTGTGTCTATAGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCGTAGAAATATGTCTTGCCATGAAAGAGTGACTGTGTCT-TAGACAGC  140

seq1  ATGAGAATTTGTTGAACTTTAACTCTTGGAAATCAGCTGGGAAAACACTC  200
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  ATGAGAATTTGTTGAACTTTAACTC-TGGAAATCAGCT-GGAAAACACTC  188

seq1  TGCAGGAAGATAATCTGCTGATCTTGAACTTCTATTGAGAACCGTATGTC  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGCAGGAAGATAATCTGCTGATCTTGAACTTCTA-TGAGAACCGTATGTC  237

seq1  TCGCAAGTACTGCTGGGATGACACGCTTTTACACACTTGCTTCCCTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAAGTACTGCTGGGATGACACGCTTTTACACACTTGCTTCCCTCCCT  287

seq1  GAGGTGGAGTCATGGTGGTTGCTCTTCAAGTCTCTTCAATATATATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGAGTCATGGTGGTTGCTCTTCAAGTCTCTTCAATATATATGTTA  337

seq1  ACACAGCTGCATGGAATCTGAAGCCTTTTAATGGTCATACCTGTCCTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTGCATGGAATCTGAAGCCTTTTAATGGTCATACCTGTCCTCAC  387

seq1  TGCTACGGGTTTCTTTCCCCAGCCTTGTGAACAAGGACACCGGGTGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACGGGTTTCTTTCCCCAGCCTTGTGAACAAGGACACCGGGTGAAGC  437

seq1  GTATTCATGCTGTGGCTAACATTGGCACCGCACTCAAATTCCTTGAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATGCTGTGGCTAACATTGGCACCGCACTCAAATTCCTTGAAGGA  487

seq1  AGGAAGGTAAGAAATGAAATGAAATGGAAACACTGGAGAGAAAGCTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTAAGAAATGAAATGAAATGGAAACACTGGAGAGAAAGCTTGGG  537

seq1  TCTACTGACTTTCTAACTGTTGTCTTTGGGGTATAACTGCACGCTGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGACTTTCTAACTGTTGTCTTTGGGGTATAACTGCACGCTGTCTG  587

seq1  TACTACATGAGGCAGTCGAGTAAACAAATTTAGATTTACAGAAATGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATGAGGCAGTCGAGTAAACAAATTTAGATTTACAGAAATGTTGC  637

seq1  AAAAAGGAGACCACAGTTCACTTTACTTAACTCCCTCCAGGTTAAGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAGACCACAGTTCACTTTACTTAACTCCCTCCAGGTTAAGAGCA  687

seq1  TAGGAAATGAGCCTGGCAGTGGTGACACATGCCTTTAATCTCAGCAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATGAGCCTGGCAGTGGTGACACATGCCTTTAATCTCAGCAATCA  737

seq1  GGAGGCAGAGGCAGTCAGTTCTCTGAGTTCAAGGCCAGCCTTGTCTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGTCAGTTCTCTGAGTTCAAGGCCAGCCTTGTCTACAG  787

seq1  CGTGAGTTCTAGAAGCCAGCACTACACAGAGAAACACTGTCTCAAAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGTTCTAGAAGCCAGCACTACACAGAGAAACACTGTCTCAAAAACA  837

seq1  CAATAACAAACAAACATAAAGAACATATGTAATGATGGAACTATTATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACAAACAAACATAAAGAACATATGTAATGATGGAACTATTATCAA  887

seq1  AGTAAGAAAATTTAAACTAATGCACCATCGTTAATGAAAGTATAGAGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAAATTTAAACTAATGCACCATCGTTAATGAAAGTATAGAGCAT  937

seq1  GGTCTGTGTACCATTGTCCTAGGATTCAATCCAACACCACACCATTCATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGTACCATTGTCCTAGGATTCAATCCAACACCACACCATTCATC  987

seq1  TCATTGTCTCTTACTCTACAGCAAGTCTCCATGCTTTCTAGTGTTTCATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCTCTTACTCTACAGCAAGTCTCCATGCTTTCTAGTGTTTCATG  1037

seq1  ACCTTTGACACTTTTAATTCTGCTAGTTAGTCATTTTTGGGAACTCTCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGACACTTTTAATTCTGCTAGTTAGTCATTTTTGGGAACTCTCAG  1087

seq1  TTTGGGTTTATGCGTTGTGTTCTTCTGATTAGATTGCAGTTCCACATTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTATGCGTTGTGTTCTTCTGATTAGATTGCAGTTCCACATTGT  1137

seq1  TGGCAAGAATTC  1162
      ||||||||||||
seq2  TGGCAAGAATTC  1149


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