BAC Information

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BAC

Clone NameB6Ng01-025I09
Chromosome10 (Build37)
Map Location 21,047,726 - 21,161,587
singlet/doubletdoublet
Overlap geneHbs1l, Aldh8a1
Upstream geneBclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202, Ahi1, Myb, LOC100039870
Downstream geneLOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025I09.bB6Ng01-025I09.g
ACCDH856846DH856847
length8541,159
definitionDH856846|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I09, 5' end.DH856847|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,047,726 - 21,048,583)(21,160,414 - 21,161,587)
sequence
gaattctgttcactctctggagaggtctgggcagtgttgccaaatatctg
ataatgctgaggacagtctcttcacagcagcaaatgatcacattcagaat
gtcagcaacactgaggaagcctactttttgagaatttgatgaatccagaa
tagattttacgctgaaatacttctctgtaagcggaaacatgcttaacgga
atcacccttgcacttcctctgccttcattcctttagcagaatatcagaac
actgaaagagctgtcaggaaatgaccgactggctgtacatttctatttct
atgtgctcacttcttattggcttatttaaatgtgtaacagacataaattc
atccctcctggctggagtagttctgattctctaatttattgagctattct
aatgacattccctgatttaaatattctctgggtattgtatagaaagtctc
gattggtagctgtaagttcaggtttcctgtcgtttctgatttacacgtgt
tactgctcattctctcagactgaccataattcttaagcaaatagaactgg
gttctagagaaggtaaatgcactttgagttcctatcgtgtggctcggttc
atgtttgttctaatactcttgatcctatcattgtagttatgtaagaactc
aggaagctaaatggacatagaagtgtccaattaaatactataattgatga
tcttgattgagtacaaacttcagtgattattttcatattacagttattct
taaatactactcaatgatatctgtctttataatgaaagttgatttcttag
cttcgtttgggatttgctttttgtgttcttgcaaatacgtgcattcagct
tcat
gaattcctacgcttatagacactctctcactacaaatgctcaaaatttaa
aatctcaactttcttgcttgtgttcttaaatttgtatctcaatacgtacc
gggtgtgcactctaaccctagattcatgaccacaggaaggaaatctcagg
ggttccctgtggggctagtggtgggttcacatacgtcacagggaagcagg
atttgtggtatttttacataaactgttacgtactttgcaaagaatcaggg
aaaaacttatttttaattaagcattccaatagtcaatagagcaaaggtgg
aaagtgcctgttaaagagacgtttgcaaactgtcctcactgattgctatt
ttatctttctcctagggcccagaggtgggggtgaggacatctgtttgtta
cacatgaacatgggagtgagcccacgctgtcattttgagtgctttcaaga
gacgcatctgtaatttggagcaaggctggatgcctgcgtgcctgtcttcc
tactgagatcacagatggcacctcttgttttctacagccaagaatgcaat
aacaagaggacaagaaaccagacaccctgcgtaaactcaggctgcccttt
ggaaccagataaccctcccttgagtaggactctcagcacactggaagctg
ttcagtccatctctgcttcttcctgggtgccaatagcaatccacttgtca
tgaaaaacaactttcccaaatgtcttcagacattttcagatattctaggg
agccaaaccactcttgtttgacaaccattgcaggagtaaggtcaacagga
ggatctgaaatggatttctagttattacaatggggggaaaatcacgtttt
aaggctactgagatggttcagtggataaggatgcctgcacagccctgaca
ctaagatagttctcagaacacataatggaaaaagagaactgacttctgaa
atttatctcctgacctcccacatgtctacgacacacaaactcacaagtcc
tctttctctccctccttcctctcactcttccctctgaaaaccacacattt
gcatttaaaacagaagaacaggatgatttgagccaaagccttgcagtctc
tttccagtctgaacacagccatactgtctgcaagtttcctgacttactga
aggtagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21047726_21048583
seq2: B6Ng01-025I09.b_34_887

seq1  GAATTCTGTTCCACTCTCTGGAGAGGTCTGGGCAGTGTTGCCAAATATCT  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTT-CACTCTCTGGAGAGGTCTGGGCAGTGTTGCCAAATATCT  49

seq1  GATAATGCTGAGGACAGTCTCTTCACAGCAGCAAATGATCACATTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGCTGAGGACAGTCTCTTCACAGCAGCAAATGATCACATTCAGAA  99

seq1  TGTCAGCAACACTGAGGAAGCCTACTTTTTGAGAATTTGATGAATCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCAACACTGAGGAAGCCTACTTTTTGAGAATTTGATGAATCCAGA  149

seq1  ATAGATTTTACGCTGAAATACTTCTCTGTAAGCGGAAACATGCTTAACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTTACGCTGAAATACTTCTCTGTAAGCGGAAACATGCTTAACGG  199

seq1  AATCACCCTTGCACTTCCTCTGCCTTCATTCCTTTAGCAGAATATCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCCTTGCACTTCCTCTGCCTTCATTCCTTTAGCAGAATATCAGAA  249

seq1  CACTGAAAGAGCTGTCAGGAAATGACCGACTGGCTGTACATTTCTATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAGAGCTGTCAGGAAATGACCGACTGGCTGTACATTTCTATTTC  299

seq1  TATGTGCTCACTTCTTATTGGCTTATTTAAATGTGTAACAGACATAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTCACTTCTTATTGGCTTATTTAAATGTGTAACAGACATAAATT  349

seq1  CATCCCTCCTGGCTGGAGTAGTTCTGATTCTCTAATTTATTGAGCTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCCTGGCTGGAGTAGTTCTGATTCTCTAATTTATTGAGCTATTC  399

seq1  TAATGACATTCCCTGATTTAAATATTCTCTGGGTATTGTATAGAAAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACATTCCCTGATTTAAATATTCTCTGGGTATTGTATAGAAAGTCT  449

seq1  CGATTGGTAGCTGTAAGTTCAGGTTTCCTGTCGTTTCTGATTTACACGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGGTAGCTGTAAGTTCAGGTTTCCTGTCGTTTCTGATTTACACGTG  499

seq1  TTACTGCTCATTCTCTCAGACTGACCATAATTCTTAAGCAAATAGAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTCATTCTCTCAGACTGACCATAATTCTTAAGCAAATAGAACTG  549

seq1  GGTTCTAGAGAAGGTAAATGCACTTTGAGTTCCTATCGTGTGGCTCGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGAGAAGGTAAATGCACTTTGAGTTCCTATCGTGTGGCTCGGTT  599

seq1  CATGTTTGTTCTAATACTCTTGATCCTATCATTGTAGTTATGTAAGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGTTCTAATACTCTTGATCCTATCATTGTAGTTATGTAAGAACT  649

seq1  CAGGAAGCTAAATGGACATAGAAGTGTCCAATTAAATACTATAATTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCTAAATGGACATAGAAGTGTCCAATTAAATACTATAATTGATG  699

seq1  ATCTTGATTGAGTACAAACTTCAGTGATTATTTTCAAATTACAGTTATTC  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCTTGATTGAGTACAAACTTCAGTGATTATTTTCATATTACAGTTATTC  749

seq1  TAAAATACTACTCAATGATAATCTGTCTTTATAATGAAAGTTGATTTCTT  800
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAAATACTACTCAATGAT-ATCTGTCTTTATAATGAAAGTTGATTTCTT  798

seq1  AGCTTCGTTTGGGATTTTGCTTTTTGTGTTCTTGCAAATACGTGCATTTC  850
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  AGCTTCGTTTGGGA-TTTGCTTTTTGTGTTCTTGCAAATACGTGCA-TTC  846

seq1  AGCTTCAT  858
      ||||||||
seq2  AGCTTCAT  854

seq1: chr10_21160414_21161587
seq2: B6Ng01-025I09.g_70_1228 (reverse)

seq1  CCTCTACCTTTCAGGTAAGTCA-GAAACTTGCAGAACCAG-ATAGCTGTG  48
      |||||||| |||| |||||||| ||||||||||||  ||| || ||||||
seq2  CCTCTACC-TTCA-GTAAGTCAGGAAACTTGCAGA--CAGTATGGCTGTG  46

seq1  TTTCCAGACTGGGAGAGGAGCTGCAAGTGCTCT-GCTCAAACCACTCTGG  97
      ||  |||||| ||| ||   ||||||| ||| | ||||||| ||  ||| 
seq2  TT--CAGACT-GGAAAGAGACTGCAAG-GCTTTGGCTCAAATCATCCTGT  92

seq1  TCTTCTG-TCTAAATGCAAAATGTGTGTGTGTCAGGAGGGAGAGAGGTGG  146
      ||||||| | ||||||| |||||||||  | ||| |||||| ||||   |
seq2  TCTTCTGTTTTAAATGC-AAATGTGTGGTTTTCA-GAGGGA-AGAG--TG  137

seq1  AGAGGGAGGGAGGGAGAGAGAGAGGGACTTGTGAGTTTGTGTGTCGTAGA  196
      ||| ||| ||||||||||| ||| ||||||||||||||||||||||||||
seq2  AGA-GGAAGGAGGGAGAGAAAGA-GGACTTGTGAGTTTGTGTGTCGTAGA  185

seq1  CCATGTGGGGAGGTCAGGAGATAAATTTCAGAAGTCAGTTCTCTTTTTCC  246
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -CATGT-GGGAGGTCAGGAGATAAATTTCAGAAGTCAGTTCTCTTTTTCC  233

seq1  ATTATGTGTTCTGAGAACTAATCTTAGGTGTCAGGGCTGTGCAGGCATCC  296
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  ATTATGTGTTCTGAGAACT-ATCTTA-GTGTCAGGGCTGTGCAGGCATCC  281

seq1  TTATCCACTGAACCATCTCAGTAGCCTTAAAACGTGATTTTCCCCCCATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACTGAACCATCTCAGTAGCCTTAAAACGTGATTTTCCCCCCATT  331

seq1  GTAATAACTAGAAATCCATTTCAGATCCTCCTGTTGACCTTACTCCTGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAACTAGAAATCCATTTCAGATCCTCCTGTTGACCTTACTCCTGCA  381

seq1  ATGGTTGTCAAACAAGAGTGGTTTGGCTCCCTAGAATATCTGAAAATGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTCAAACAAGAGTGGTTTGGCTCCCTAGAATATCTGAAAATGTC  431

seq1  TGAAGACATTTGGGAAAGTTGTTTTTCATGACAAGTGGATTGCTATTGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATTTGGGAAAGTTGTTTTTCATGACAAGTGGATTGCTATTGGC  481

seq1  ACCCAGGAAGAAGCAGAGATGGACTGAACAGCTTCCAGTGTGCTGAGAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGAAGAAGCAGAGATGGACTGAACAGCTTCCAGTGTGCTGAGAGT  531

seq1  CCTACTCAAGGGAGGGTTATCTGGTTCCAAAGGGCAGCCTGAGTTTACGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCAAGGGAGGGTTATCTGGTTCCAAAGGGCAGCCTGAGTTTACGC  581

seq1  AGGGTGTCTGGTTTCTTGTCCTCTTGTTATTGCATTCTTGGCTGTAGAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTCTGGTTTCTTGTCCTCTTGTTATTGCATTCTTGGCTGTAGAAA  631

seq1  ACAAGAGGTGCCATCTGTGATCTCAGTAGGAAGACAGGCACGCAGGCATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGTGCCATCTGTGATCTCAGTAGGAAGACAGGCACGCAGGCATC  681

seq1  CAGCCTTGCTCCAAATTACAGATGCGTCTCTTGAAAGCACTCAAAATGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGCTCCAAATTACAGATGCGTCTCTTGAAAGCACTCAAAATGAC  731

seq1  AGCGTGGGCTCACTCCCATGTTCATGTGTAACAAACAGATGTCCTCACCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGGGCTCACTCCCATGTTCATGTGTAACAAACAGATGTCCTCACCC  781

seq1  CCACCTCTGGGCCCTAGGAGAAAGATAAAATAGCAATCAGTGAGGACAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTGGGCCCTAGGAGAAAGATAAAATAGCAATCAGTGAGGACAGT  831

seq1  TTGCAAACGTCTCTTTAACAGGCACTTTCCACCTTTGCTCTATTGACTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACGTCTCTTTAACAGGCACTTTCCACCTTTGCTCTATTGACTAT  881

seq1  TGGAATGCTTAATTAAAAATAAGTTTTTCCCTGATTCTTTGCAAAGTACG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCTTAATTAAAAATAAGTTTTTCCCTGATTCTTTGCAAAGTACG  931

seq1  TAACAGTTTATGTAAAAATACCACAAATCCTGCTTCCCTGTGACGTATGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTTATGTAAAAATACCACAAATCCTGCTTCCCTGTGACGTATGT  981

seq1  GAACCCACCACTAGCCCCACAGGGAACCCCTGAGATTTCCTTCCTGTGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACCACTAGCCCCACAGGGAACCCCTGAGATTTCCTTCCTGTGGT  1031

seq1  CATGAATCTAGGGTTAGAGTGCACACCCGGTACGTATTGAGATACAAATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATCTAGGGTTAGAGTGCACACCCGGTACGTATTGAGATACAAATT  1081

seq1  TAAGAACACAAGCAAGAAAGTTGAGATTTTAAATTTTGAGCATTTGTAGT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACACAAGCAAGAAAGTTGAGATTTTAAATTTTGAGCATTTGTAGT  1131

seq1  GAGAGAGTGTCTATAAGCGTAGGAATTC  1174
      ||||||||||||||||||||||||||||
seq2  GAGAGAGTGTCTATAAGCGTAGGAATTC  1159