BAC Information

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BAC

Clone NameB6Ng01-025N03
Chromosome10 (Build37)
Map Location 28,941,535 - 29,105,882
singlet/doubletdoublet
Overlap geneEchdc1, Rnf146
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
Downstream geneRspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025N03.bB6Ng01-025N03.g
ACCDH857045DH857046
length1,1701,079
definitionDH857045|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N03, 5' end.DH857046|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,941,535 - 28,942,722)(29,104,790 - 29,105,882)
sequence
gaattcattgctcaagtaaattaggaaaaataagtttttaatttttaatt
tttacagctttgccaggaagtaaagcttcagaggaagatgaacatgaatg
aatattctaaggtcattgatctttgccgtgatcaagataaaatggaattt
cccccaaatcacctcaactcggcacaatgcaaattaagagtgctgaatta
ccgagatgatccagaaaaggaaaagaaaacagaaaggaatttccttgggg
aagaaagtcaagggtctccaaaacaaaacatacacacagaaaccaaagtg
gagttttggaatcctttggccacagacaggaaggcatgtgagacctgggc
tggtgagaacacttctaaggagagcaaagatttttctgtcgcccttaaca
cagtaagtaagatggggtcagccgggagctatttctaaagaagcatttca
gcacgctaacaaaagctctcttttatgtgctatgctatgaaggctcttga
agaacttgcaaaagttagtgaagaattgtgcacctttcaagaggaaatcc
aaaagcattctaaccacagaaggtaggctggctaacacatatgatctctg
tagaccagagaatagaaaagaattctggttttattttatgaatttacact
gactcatcatgtatatcttagctcatgatccttaaaagtcatcttccagt
acttttcataacttaagtattaggaatattgtattgagccggtgcggtgg
cgcacgcctttaatcccagcactcgggaggcagaggcaggcggatttctg
agtacgaggccagcctggtctacaaagtgagtttcgggacagccaggact
atacagagaaacactgtcttgaaaaagaaaaaaaaacaaaaataaggaat
agtgtattgtattctttcagtgtttaggcaaagtagacagtctgtacaaa
tgactgtgtatcctctactgaagtctttctccatcagagttttgaccaga
gggggaaattacaaataaaacaacccagttaaatgcttaaactgtgacag
ctttaacaatgtgtgtttgacatttgagaatgtctataagcacttaaagc
tgggtcattatttcccaacgtgagtggaatgacatagccaatgtaattca
aataaccaattatatgtcta
gaattcaccctcttttcaaccttaagaaagacctttccaaaaactgactt
acttctgagccaaaaaagaagagtgcaaaaaccttccccaaatagatatc
atatgttttagttaggggtttattgctgtgaagagatgctatgactaagg
aaacttttataaaggaaacatttcattgaggctagcttacagtttcagcg
ggttatttcactatcatcatggcataacgcttgatgacacacaggtagat
acagtgctagagaagcagctgagagttgccagaaagagactgtcacactg
agtgtagcttgactttaggagacctcaaaggccgcccctcacagtgatac
atttcctctaaaaagacgacatctactccaacaatgccacatctccaaat
agggctactccctatgggccaagcatctaaacacatgagtctacgggggc
catacctattcaaaccaccacaccatacattccacattccatgactttgc
tatgagataaaaggttagcattggaaaagagacaagctgaaaatgcacaa
gcagaccatgatctgattacagatatctggacatataaagagcctattat
tagaaaagctacgaagggctgataattattaaatattcagttattaacta
cacataaactgcctcatggcaaaattcacaaagtacaattaagattaact
ttgccgaataatccagtcttagaatgtcatgtaacaaagcaagaacaagg
taaagttgatgggctaaacacgcaccaagagctgaaaagatagaaaaaaa
ttctaggaaaaaaagataataataaaactaaaatcaaatataaattaata
gagaaacaaaaccataacataattaattaaatgtttataagttcacaaac
ttaaatatttgtacgagttctaatgggataaaatagtaatacagtaggag
gggagagagagaaaaagagagagagagattatactggaaactaggtctct
tgaggtgttgatcagcatctatatgctctgtatatgttaatatttttcgt
gctactgactgatttggtgttggttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28941535_28942722
seq2: B6Ng01-025N03.b_42_1211

seq1  GAATTCATTGCTCAAGTAAATTAGGAAAAATAAGTTTTTAATTTTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTCAAGTAAATTAGGAAAAATAAGTTTTTAATTTTTAATT  50

seq1  TTTACAGCTTTGCCAGGAAGTAAAGCTTCAGAGGAAGATGAACATGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCTTTGCCAGGAAGTAAAGCTTCAGAGGAAGATGAACATGAATG  100

seq1  AATATTCTAAGGTCATTGATCTTTGCCGTGATCAAGATAAAATGGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTAAGGTCATTGATCTTTGCCGTGATCAAGATAAAATGGAATTT  150

seq1  CCCCCAAATCACCTCAACTCGGCACAATGCAAATTAAGAGTGCTGAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAATCACCTCAACTCGGCACAATGCAAATTAAGAGTGCTGAATTA  200

seq1  CCGAGATGATCCAGAAAAGGAAAAGAAAACAGAAAGGAATTTCCTTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGATGATCCAGAAAAGGAAAAGAAAACAGAAAGGAATTTCCTTGGGG  250

seq1  AAGAAAGTCAAGGGTCTCCAAAACAAAACATACACACAGAAACCAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTCAAGGGTCTCCAAAACAAAACATACACACAGAAACCAAAGTG  300

seq1  GAGTTTTGGAATCCTTTGGCCACAGACAGGAAGGCATGTGAGACCTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGGAATCCTTTGGCCACAGACAGGAAGGCATGTGAGACCTGGGC  350

seq1  TGGTGAGAACACTTCTAAGGAGAGCAAAGATTTTTCTGTCGCCCTTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAACACTTCTAAGGAGAGCAAAGATTTTTCTGTCGCCCTTAACA  400

seq1  CAGTAAGTAAGATGGGGTCAGCCGGGAGCTATTTCTAAAGAAGCATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGTAAGATGGGGTCAGCCGGGAGCTATTTCTAAAGAAGCATTTCA  450

seq1  GCACGCTAACAAAAGCTCTCTTTTATGTGCTATGCTATGAAGGCTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTAACAAAAGCTCTCTTTTATGTGCTATGCTATGAAGGCTCTTGA  500

seq1  AGAACTTGCAAAAGTTAGTGAAGAATTGTGCACCTTTCAAGAGGAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGCAAAAGTTAGTGAAGAATTGTGCACCTTTCAAGAGGAAATCC  550

seq1  AAAAGCATTCTAACCACAGAAGGTAGGCTGGCTAACACATATGATCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATTCTAACCACAGAAGGTAGGCTGGCTAACACATATGATCTCTG  600

seq1  TAGACCAGAGAATAGAAAAGAATTCTGGTTTTATTTTATGAATTTACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGAGAATAGAAAAGAATTCTGGTTTTATTTTATGAATTTACACT  650

seq1  GACTCATCATGTATATCTTAGCTCATGATCCTTAAAAGTCATCTTCCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCATGTATATCTTAGCTCATGATCCTTAAAAGTCATCTTCCAGT  700

seq1  ACTTTTCATAACTTAAGTATTAGGAATATTGTATTGAGCCGGTGCGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCATAACTTAAGTATTAGGAATATTGTATTGAGCCGGTGCGGTGG  750

seq1  CGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTG  800

seq1  AGTACGAGGCCAGCCTGGTCTACAAAGTGAGTTTCGGGACAGCCAGGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGAGGCCAGCCTGGTCTACAAAGTGAGTTTCGGGACAGCCAGGACT  850

seq1  ATACAGAGAAACACTGTCTTGAAAAAGAAAAAAAAACAAAAATAAGGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGAAACACTGTCTTGAAAAAGAAAAAAAAACAAAAATAAGGAAT  900

seq1  AGTGTATTGTATTCTTTCAGTGTTTAGGCAAAGTAGACAGTCTGTACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTGTATTGTATTCTTTCAGTGTTTAGGCAAAGTAGACAGTCTGTAC-AA  949

seq1  ATGACTGTGTATCCTCTACTGAAGTTCTTTCTCCATCAGAGTTTTGACCA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGACTGTGTATCCTCTACTGAAG-TCTTTCTCCATCAGAGTTTTGACCA  998

seq1  GAGGGGGAATATACAAATAGACAAACCCAGTTAAATTGGCTTAAACTGTG  1050
      |||||||||  |||||||| |  |||||||||||||  ||||||||||||
seq2  GAGGGGGAAATTACAAATAAAACAACCCAGTTAAAT--GCTTAAACTGTG  1046

seq1  ACAGCTTTAACAATGTGGTGTTTGAACAATTTGAGATGTTCTATTTAAGC  1100
      |||||||||||||||| ||||||||   ||||||||   ||||  |||||
seq2  ACAGCTTTAACAATGT-GTGTTTGA--CATTTGAGAATGTCTA--TAAGC  1091

seq1  ACTTTAAAGCTGGGTCATTTATTTCTCAACAGTGATGTGGATATGACATA  1150
      || |||||||||||||| ||||||| |||| |||| ||||| ||||||| 
seq2  AC-TTAAAGCTGGGTCA-TTATTTCCCAAC-GTGA-GTGGA-ATGACAT-  1135

seq1  AGCAAATGTACATTTCAAAATAACACATTATATGTCTA  1188
      ||| |||||| |||   |||||||  ||||||||||||
seq2  AGCCAATGTA-ATT--CAAATAACCAATTATATGTCTA  1170

seq1: chr10_29104790_29105882
seq2: B6Ng01-025N03.g_66_1144 (reverse)

seq1  AACCAA--ACCAAAAAATCAGTCAGTAGCAACAGAAAAATATAAACAATA  48
      ||||||  | ||  ||||||||||||||||   ||||||||| ||||   
seq2  AACCAACCAACACCAAATCAGTCAGTAGCA--CGAAAAATATTAACA---  45

seq1  TTAACCAGAGGCCAATATAGATGCTGATTCAACACCCTCAAGAGACCTAG  98
       ||  |||||    ||||||||||||| |||||| |||||||||||||||
seq2  -TATACAGAG---CATATAGATGCTGA-TCAACA-CCTCAAGAGACCTAG  89

seq1  TTTCCAGTATAATTCTCTCTCTCTCTTTTTTCTCTCTCTCCCCTCCTACT  148
      |||||||||||| |||||||||||| ||||||||||||||||||||||| 
seq2  TTTCCAGTATAA-TCTCTCTCTCTC-TTTTTCTCTCTCTCCCCTCCTAC-  136

seq1  TGTATTACTATTTTTATCCCATTAGAACTCGTACAAATATTTAAGTTTTG  198
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  TGTATTACTA-TTTTATCCCATTAGAACTCGTACAAATATTTAAG-TTTG  184

seq1  TGAACTTATAAACATTTAATTAATTATGTTATGGTTTTGTTTCTCTATTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTATAAACATTTAATTAATTATGTTATGGTTTTGTTTCTCTATTA  234

seq1  ATTTATATTTGATTTTAGTTTTATTATTATCTTTTTTTCCTAGAATTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTTGATTTTAGTTTTATTATTATCTTTTTTTCCTAGAATTTTT  284

seq1  TTCTATCTTTTCAGCTCTTGGTGCGTGTTTAGCCCATCAACTTTACCTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTTTTCAGCTCTTGGTGCGTGTTTAGCCCATCAACTTTACCTTG  334

seq1  TTCTTGCTTTGTTACATGACATTCTAAGACTGGATTATTCGGCAAAGTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTTTGTTACATGACATTCTAAGACTGGATTATTCGGCAAAGTTA  384

seq1  ATCTTAATTGTACTTTGTGAATTTTGCCATGAGGCAGTTTATGTGTAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATTGTACTTTGTGAATTTTGCCATGAGGCAGTTTATGTGTAGTT  434

seq1  AATAACTGAATATTTAATAATTATCAGCCCTTCGTAGCTTTTCTAATAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGAATATTTAATAATTATCAGCCCTTCGTAGCTTTTCTAATAAT  484

seq1  AGGCTCTTTATATGTCCAGATATCTGTAATCAGATCATGGTCTGCTTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTTTATATGTCCAGATATCTGTAATCAGATCATGGTCTGCTTGTG  534

seq1  CATTTTCAGCTTGTCTCTTTTCCAATGCTAACCTTTTATCTCATAGCAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGCTTGTCTCTTTTCCAATGCTAACCTTTTATCTCATAGCAAA  584

seq1  GTCATGGAATGTGGAATGTATGGTGTGGTGGTTTGAATAGGTATGGCCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGAATGTGGAATGTATGGTGTGGTGGTTTGAATAGGTATGGCCCC  634

seq1  CGTAGACTCATGTGTTTAGATGCTTGGCCCATAGGGAGTAGCCCTATTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGACTCATGTGTTTAGATGCTTGGCCCATAGGGAGTAGCCCTATTTG  684

seq1  GAGATGTGGCATTGTTGGAGTAGATGTCGTCTTTTTAGAGGAAATGTATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGGCATTGTTGGAGTAGATGTCGTCTTTTTAGAGGAAATGTATC  734

seq1  ACTGTGAGGGGCGGCCTTTGAGGTCTCCTAAAGTCAAGCTACACTCAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGGGGCGGCCTTTGAGGTCTCCTAAAGTCAAGCTACACTCAGTG  784

seq1  TGACAGTCTCTTTCTGGCAACTCTCAGCTGCTTCTCTAGCACTGTATCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTCTCTTTCTGGCAACTCTCAGCTGCTTCTCTAGCACTGTATCTA  834

seq1  CCTGTGTGTCATCAAGCGTTATGCCATGATGATAGTGAAATAACCCGCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGTCATCAAGCGTTATGCCATGATGATAGTGAAATAACCCGCTG  884

seq1  AAACTGTAAGCTAGCCTCAATGAAATGTTTCCTTTATAAAAGTTTCCTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTAAGCTAGCCTCAATGAAATGTTTCCTTTATAAAAGTTTCCTTA  934

seq1  GTCATAGCATCTCTTCACAGCAATAAACCCCTAACTAAAACATATGATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGCATCTCTTCACAGCAATAAACCCCTAACTAAAACATATGATAT  984

seq1  CTATTTGGGGAAGGTTTTTGCACTCTTCTTTTTTGGCTCAGAAGTAAGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGGGGAAGGTTTTTGCACTCTTCTTTTTTGGCTCAGAAGTAAGTC  1034

seq1  AGTTTTTGGAAAGGTCTTTCTTAAGGTTGAAAAGAGGGTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGGAAAGGTCTTTCTTAAGGTTGAAAAGAGGGTGAATTC  1079