BAC Information

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BAC

Clone NameB6Ng01-026B21
Chromosome10 (Build37)
Map Location 18,535,406 - 18,668,550
singlet/doubletdoublet
Overlap genePerp
Upstream geneTxlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300
Downstream geneTnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026B21.bB6Ng01-026B21.g
ACCDH857253DH857254
length978957
definitionDH857253|Mus musculus domesticus DNA, BAC clone: B6Ng01-026B21, 5' end.DH857254|Mus musculus domesticus DNA, BAC clone: B6Ng01-026B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,668,031 - 18,668,550)(18,535,406 - 18,536,216)
sequence
gaattcagaaaggcttcataaaaaccattttttctggcatgagatggagt
ctcaaagtagttttgatttgcatttctgtgataattggggacattgaaca
ccttttaaagtgtttattattcatttgtatttttttcttccgaaaactct
ctgttcaattccaaggcccatttttaattagggtacttgttttcttgatg
ttgatttttttttttagttctttttatattctctctatataatatacatg
atataaatagatgtgtttatataaaatatatttactatataagtaagtat
aataaataaatttaatataccaataaaatatataatatagtatacaatgt
gttatatgcatatatatttatgcaaaatacctttattatatatatataat
atacaaatattaaacctgtcagatacatagctatcaaatgtttactccca
ttctttttatttagttactgcttgcatacatgtatttaaatatacttata
tattcccaaagataagctgtttagtccatataatgcctcttgtacacttg
accgtatgtcttcagggctgaccacttggtgttggacaactaactggtat
gctcttccctgggaagggccacacctcttggtcccagaaatactcaattg
cctatagttctttgtgtaggactgaggccttgtgggttttcctcttcagt
ttggaatgtttgttgctgtcctctttgctcagcccatgcttagttggtta
tactggatagacttcatatgtgtagcttctgatgtaactagggaacacaa
tctcacagcaaagccctctgacttagggggctctcccaattccccttcct
tccacatgtcccttgagccttgggtgttcaagtgttttgtggatgtatcc
actgaggcagcctccacaactctctctgttgattggtcaccctctgttgc
aagataagttcccttgacctggactgag
gaattcctggattcagtttagcagggactcagatgtcttttgagtgtgga
taatacttaggttgtgttttactgctctgttttactggaaaactgcctct
gggattggattacgactccccttcattaagatccaagaacgtatgtttaa
aagttttctccaacatctctgttctgtgttaggagggccaactaactgtg
tcagagaaaggagagcaaaagaagacaaaaggattaaaaggaacttgctt
tgcagtgattgctcttggcaataagtcccgagaataataactctctgata
aatggttagatgggaaatgtgaaagcttaagtaagttctaagaaagtgtt
tgaggatgtgaaaactagtattttaaggaatgtaaagatgcattttgtag
aggtgtaagaaggtaatctaaagtagtaaaaatgtctcagatttctttca
atattttaaaggttcagagttttaatattgatcaatggcgttctgataag
ctgataaagctattatcagtgacaagcttaagatttcaaatttcctttgg
ttgtcttcaagtatctacaattaaaggtgcttctcattgtgccaaaataa
aaacatctctgaccaatctgtatgtatggctctgagacagtggaaaaatg
ccagtgatttttaacccaaagcttttgttatggataaaccctctttagct
gcttttcctacagtgtggatttcagtacagattacaaacagtggtaatac
taatatatataaaacctctatctcttatttaaacaaaaaagttcatgtaa
gtttcagggagtcataagactttgatctacctctcacagttcaaatggac
tccagataagaacaggctaactttccatacctgactattcttgaaggtaa
catctctttctccttggtcttgggtaccctcctctccctcactatcagac
agtatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18668031_18668550
seq2: B6Ng01-026B21.b_47_566 (reverse)

seq1  ACAGCTTATCTTTGGGAATATATAAGTATATTTAAATACATGTATGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTATCTTTGGGAATATATAAGTATATTTAAATACATGTATGCAAG  50

seq1  CAGTAACTAAATAAAAAGAATGGGAGTAAACATTTGATAGCTATGTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTAAATAAAAAGAATGGGAGTAAACATTTGATAGCTATGTATCT  100

seq1  GACAGGTTTAATATTTGTATATTATATATATATAATAAAGGTATTTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTTAATATTTGTATATTATATATATATAATAAAGGTATTTTGCA  150

seq1  TAAATATATATGCATATAACACATTGTATACTATATTATATATTTTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATATGCATATAACACATTGTATACTATATTATATATTTTATTG  200

seq1  GTATATTAAATTTATTTATTATACTTACTTATATAGTAAATATATTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAAATTTATTTATTATACTTACTTATATAGTAAATATATTTTAT  250

seq1  ATAAACACATCTATTTATATCATGTATATTATATAGAGAGAATATAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACATCTATTTATATCATGTATATTATATAGAGAGAATATAAAAA  300

seq1  GAACTAAAAAAAAAAATCAACATCAAGAAAACAAGTACCCTAATTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAAAAAAAAATCAACATCAAGAAAACAAGTACCCTAATTAAAAA  350

seq1  TGGGCCTTGGAATTGAACAGAGAGTTTTCGGAAGAAAAAAATACAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTGGAATTGAACAGAGAGTTTTCGGAAGAAAAAAATACAAATGA  400

seq1  ATAATAAACACTTTAAAAGGTGTTCAATGTCCCCAATTATCACAGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAACACTTTAAAAGGTGTTCAATGTCCCCAATTATCACAGAAATG  450

seq1  CAAATCAAAACTACTTTGAGACTCCATCTCATGCCAGTAAAAATGGTTTT  500
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAATCAAAACTACTTTGAGACTCCATCTCATGCCAGAAAAAATGGTTTT  500

seq1  TATGAAGCCTTTCTGAATTC  520
      ||||||||||||||||||||
seq2  TATGAAGCCTTTCTGAATTC  520

seq1: chr10_18535406_18536216
seq2: B6Ng01-026B21.g_67_876

seq1  GAATTCCTGGATTCAGTTTAGCAGGGACTCAGATGTCTTTTGAGTGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGATTCAGTTTAGCAGGGACTCAGATGTCTTTTGAGTGTGGA  50

seq1  TAATACTTAGGTTGTGTTTTACTGCTCTGTTTTACTGGAAAACTGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTAGGTTGTGTTTTACTGCTCTGTTTTACTGGAAAACTGCCTCT  100

seq1  GGGATTGGATTACGACTCCCCTTCATTAAGATCCAAGAACGTATGTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGATTACGACTCCCCTTCATTAAGATCCAAGAACGTATGTTTAA  150

seq1  AAGTTTTCTCCAACATCTCTGTTCTGTGTTAGGAGGGCCAACTAACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCTCCAACATCTCTGTTCTGTGTTAGGAGGGCCAACTAACTGTG  200

seq1  TCAGAGAAAGGAGAGCAAAAGAAGACAAAAGGATTAAAAGGAACTTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAAGGAGAGCAAAAGAAGACAAAAGGATTAAAAGGAACTTGCTT  250

seq1  TGCAGTGATTGCTCTTGGCAATAAGTCCCGAGAATAATAACTCTCTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGATTGCTCTTGGCAATAAGTCCCGAGAATAATAACTCTCTGATA  300

seq1  AATGGTTAGATGGGAAATGTGAAAGCTTAAGTAAGTTCTAAGAAAGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTAGATGGGAAATGTGAAAGCTTAAGTAAGTTCTAAGAAAGTGTT  350

seq1  TGAGGATGTGAAAACTAGTATTTTAAGGAATGTAAAGATGCATTTTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGTGAAAACTAGTATTTTAAGGAATGTAAAGATGCATTTTGTAG  400

seq1  AGGTGTAAGAAGGTAATCTAAAGTAGTAAAAATGTCTCAGATTTCTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAAGAAGGTAATCTAAAGTAGTAAAAATGTCTCAGATTTCTTTCA  450

seq1  ATATTTTAAAGGTTCAGAGTTTTAATATTGATCAATGGCGTTCTGATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAAGGTTCAGAGTTTTAATATTGATCAATGGCGTTCTGATAAG  500

seq1  CTGATAAAGCTATTATCAGTGACAAGCTTAAGATTTCAAATTTCCTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAGCTATTATCAGTGACAAGCTTAAGATTTCAAATTTCCTTTGG  550

seq1  TTGTCTTCAAGTATCTACAATTAAAGGTGCTTCTCATTGTGCCAAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCAAGTATCTACAATTAAAGGTGCTTCTCATTGTGCCAAAATAA  600

seq1  AAACATCTCTGACCAATCTGTATGTATGGCTCTGAGACAGTGGAAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTCTGACCAATCTGTATGTATGGCTCTGAGACAGTGGAAAAATG  650

seq1  CCAGTGATTTTTAACCCAAAGCTTTTGTTATGGATAAACCCTCTTTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATTTTTAACCCAAAGCTTTTGTTATGGATAAACCCTCTTTAGCT  700

seq1  GCTTTTCCTACAGTGTGGATTTCAGTACAGATTACAAACAGTGGTAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCTACAGTGTGGATTTCAGTACAGATTACAAACAGTGGTAATAC  750

seq1  TAATATATATAAAACCTCTATCTCTTATTTTAAACAAAAAAGTTCATGTA  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAATATATATAAAACCTCTATCTCTTA-TTTAAACAAAAAAGTTCATGTA  799

seq1  AGTTTCAGGGA  811
      |||||||||||
seq2  AGTTTCAGGGA  810