BAC Information

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BAC

Clone NameB6Ng01-026F17
Chromosome10 (Build37)3 (Build37)
Map Location 104,054,837 - 104,055,72664,307,212 - 64,308,038
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026F17.bB6Ng01-026F17.g
ACCDH857425DH857426
length956822
definitionDH857425|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F17, 5' end.DH857426|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,054,837 - 104,055,726)(64,307,212 - 64,308,038)
sequence
gaattctgggccatacctaaccatgataaaagcaatctacagcaaaccag
tagccaacatcaaagtaaatggtgagaagctggaagaaatcccactaaaa
tcagggactagacaaggctgtccactcttgccctacctattcaatattgt
acttaaagtcctagccagagcaattagacaacaaaaggaaatcaagggga
tacaaattggaaaagaagaagtcaaaatatcactctttgcatatgatatg
atagtatatataagtgaccctaaaaattccaccagagaactcctaaacct
gataaacagcttcggtgaagtagctggatataaaaataattcaagcaagt
caattgcctttcagtactcaaaggataaacaggctgagaaagaaattagg
gaaacaaaacccttctcaatagtcacgaacaatataaaataccttggcgt
gactctaactaaagaaatgaaagatctgtatgacaagaacaagatcaagt
ctctgaagaaagaaattaaagaagatctcagaagatggaaagatctccca
tgctcatggattggcagaatcaacattctaaaaatggctatcttgccaaa
accaatctacagattcaatgcaattctcatcaaaattccaactcaattct
tcagcaaattagaaagggcaatttgcaaattcatctggaacaacaagata
cataggaaagcaaaaaactcttctcaagaagttgggctggagagatggct
cagccgttaaaggctaggctcacaccaaaatacgaggataaaagaacctc
tggtggaatcaccatgcctgacctaaagctttactacagagcaagtgtga
taaaaactgcatggtactggtacaacgacaggcaaatagaccaatggaaa
cattcgaacatctgagatgaacccacacacctatggcacttgatcttgac
aggagc
gaattcctttatgatgtacaccctaacaaggatccaaatgatgtcttgac
cattgaattctggcaaactgcttttaactgtaccgggcccaacaacagtg
tgccttacaatgtggaccacagagtgaatatgactggtaaagaagacaga
ctgtatgacatgtctgatcagctctgcactggagaggagaaactggaaaa
tctgaaaaacacctatctggatacatctcacctaagaatcacaaacaatg
tcagacaagctgtgtatcttatggctcatgccctggatcatttaagcaat
tgtgacttattggaagaacagaggaataatacagcatgttcacatatacc
tgactttgagcccaaagaggtacgttatttgaccctattatagagcatgg
ggtaaaaccaaggtttgctgacatttacatacctttgaaattgctgattt
gcttccatatgattttagaacatcaaaatttgtctggatgacttgattgt
tcactttacattcccatttttttttttttaccaaatcactaggtttggtg
tcaataataagaaatctcacaaaagaaaaaataatgccttttacaaaata
tgcttttttttcttctcagatatgaaacccctgagtatctaacagttaat
catgagtagtgactctagttacttcccggggtctgactcccatgtccata
tggaactaggtatctaagaaactatttgtgtttcctctacatctgtgcat
gttaggaaaagatttgtcagtccctccagcttaggaaagtccaggatata
aatggatttccctaaaactcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104054837_104055726
seq2: B6Ng01-026F17.b_53_998 (reverse)

seq1  GCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATCTCTGG  50
      |||||  |||| ||||||||||| |||||||||||||||||||||||  |
seq2  GCTCC--TGTC-AAGATCAAGTG-CCATAGGTGTGTGGGTTCATCTC-AG  45

seq1  ATCTTCAATTCTGTTCCATTGGTCTACTTGTCTGTCGCTATACAAGTACC  100
      || ||| | | | ||||||||||||| ||| |||||| | ||| ||||||
seq2  ATGTTCGAATGT-TTCCATTGGTCTATTTGCCTGTCGTTGTACCAGTACC  94

seq1  ATGCAGTTTTTATCACAATTGCTCTGTAGTACAGTTTTAGGTCCGGGATG  150
      ||||||||||||||||| ||||||||||||| || |||||||| || |||
seq2  ATGCAGTTTTTATCACACTTGCTCTGTAGTAAAGCTTTAGGTCAGGCATG  144

seq1  GTGATTCCACCAGAGGTTCTTTTATC------------------------  176
      ||||||||||||||||||||||||||                        
seq2  GTGATTCCACCAGAGGTTCTTTTATCCTCGTATTTTGGTGTGAGCCTAGC  194

seq1  ----------------------------------CTTGAGAAGAG-TTTT  191
                                        ||||||||||| ||||
seq2  CTTTAACGGCTGAGCCATCTCTCCAGCCCAACTTCTTGAGAAGAGTTTTT  244

seq1  TGCTATCCTAGGTTTTTTGTTATTCCAGATGAATCTGCCGATTGCCCTTT  241
      |||| ||||| || | ||||| |||||||||||| |||  ||||||||||
seq2  TGCTTTCCTATGTATCTTGTTGTTCCAGATGAATTTGCAAATTGCCCTTT  294

seq1  ATAATTCTTTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAAT  291
       |||||   |||||||||||||||||||||||||| | ||||||||||||
seq2  CTAATTTGCTGAAGAATTGAGTTGGAATTTTGATGAGAATTGCATTGAAT  344

seq1  CTGTAGATTGCTTTTGGCAAGATAGCCATTTTTACTATATTGATCCTGCC  341
      |||||||||| |||||||||||||||||||||||  || ||||| |||||
seq2  CTGTAGATTGGTTTTGGCAAGATAGCCATTTTTAGAATGTTGATTCTGCC  394

seq1  GATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTT  391
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTT  444

seq1  CTTTCTTCAGAGACATGA---AGTTCTTGTCATACAGATCTTTCACTTCC  438
      |||||||||||||| |||    ||||||||||||||||||||||| ||| 
seq2  CTTTCTTCAGAGACTTGATCTTGTTCTTGTCATACAGATCTTTCATTTCT  494

seq1  TTAGTTAGAGTCACGCCAAGGAATTTTATATTATTTGTGGCTATTGAGAA  488
      ||||||||||||||||||||| |||||||||| || ||| ||||||||||
seq2  TTAGTTAGAGTCACGCCAAGGTATTTTATATTGTTCGTGACTATTGAGAA  544

seq1  GGGTGTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTGTCCTTTGTGTAGA  538
      |||| ||||||||||||||||||||||||||||||| ||||||| |||  
seq2  GGGTTTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTATCCTTTGAGTACT  594

seq1  GAAAGCCCATTGACTTGTTTGAGTTAATTTTATATCCAGCTACTTCACTG  588
      ||||| | ||||||||| |||| ||| ||||||||||||||||||||| |
seq2  GAAAGGCAATTGACTTGCTTGAATTATTTTTATATCCAGCTACTTCACCG  644

seq1  AAGCTGTATATTAGGTTTAGGAGTTCTCTGGTTGAATTTTTAGGGTCACT  638
      ||||||| ||| |||||||||||||||||||| |||||||||||||||||
seq2  AAGCTGTTTATCAGGTTTAGGAGTTCTCTGGTGGAATTTTTAGGGTCACT  694

seq1  TATATATACTATCATATCATCTGCAAAAAGTGATATTTTGACTTCTTCCT  688
      |||||||||||||||||||| |||||| |||||||||||||||||||| |
seq2  TATATATACTATCATATCATATGCAAAGAGTGATATTTTGACTTCTTCTT  744

seq1  TTCCAATTTGTATCCCCTTGATCTCCTTTTGTTGTCTAATTGCTCTGGCT  738
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCCAATTTGTATCCCCTTGATTTCCTTTTGTTGTCTAATTGCTCTGGCT  794

seq1  AGGACTTCAGGTACAATGTTGAATATGTAGGGAGAGAGTGGAAAGCCTTG  788
      ||||||| | ||||||| ||||||| ||||||  |||||||| |||||||
seq2  AGGACTTTAAGTACAATATTGAATAGGTAGGGCAAGAGTGGACAGCCTTG  844

seq1  TCTAGTCCCTGATTTTAGTGGGATTGCTTCAAGCTTCTCACCATTTACCT  838
      ||||||||||||||||||||||||| |||| ||||||||||||||||| |
seq2  TCTAGTCCCTGATTTTAGTGGGATTTCTTCCAGCTTCTCACCATTTACTT  894

seq1  TGATGCTGGTTACTGGTTTGCTGTAGATTGCTTTTATCATGTTTAGGTAT  888
      ||||| ||| ||||||||||||||||||||||||||||||| ||||||||
seq2  TGATGTTGGCTACTGGTTTGCTGTAGATTGCTTTTATCATGGTTAGGTAT  944

seq1  GG  890
      ||
seq2  GG  946

seq1: chr3_64307212_64308038
seq2: B6Ng01-026F17.g_67_888 (reverse)

seq1  TGGAGTTTAAGGGAAATTATATATAATATCCAGGACTTATCCTAAGCTGG  50
      |||||||| ||||||| |  || | |||||| |||||| |||||||||||
seq2  TGGAGTTTTAGGGAAA-TCCAT-TTATATCCTGGACTT-TCCTAAGCTGG  47

seq1  AGGGACTTACAAATCTTTTCCTAACATGAATATGATGTATATGAAACACA  100
      ||||||| |||||||||||||||||||| | | |||||| | ||||||||
seq2  AGGGACTGACAAATCTTTTCCTAACATGCACA-GATGTAGAGGAAACACA  96

seq1  AATAGTTACTTAGATAACAAGTTGCATATTGGATATGGGAAACAGACCCC  150
      ||||||| |||||||| | |||| |||| |||| ||||||  ||||||||
seq2  AATAGTTTCTTAGATACCTAGTTCCATA-TGGACATGGGAGTCAGACCCC  145

seq1  GGGAAGTAACTAGAGTCACTACTCATGATTAACTCTTAGATACTTTTAGG  200
      |||||||||||||||||||||||||||||||||| |||||||||    ||
seq2  GGGAAGTAACTAGAGTCACTACTCATGATTAACTGTTAGATACTCAGGGG  195

seq1  TTTCATATCTGTGAAGAAAAAAAAGCATATTTTGTAAAAGGCATTATTTT  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATCTGAGAAGAAAAAAAAGCATATTTTGTAAAAGGCATTATTTT  245

seq1  TTCTTTTGTGAGATTTCTTATTATTGACAACAAACCTAGTGATTTGGTAA  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCTTTTGTGAGATTTCTTATTATTGACACCAAACCTAGTGATTTGGTAA  295

seq1  AAAAAAAAAAATGGGAATGTAAAGTGAACAATCAAGTCATCCAGACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAATGGGAATGTAAAGTGAACAATCAAGTCATCCAGACAAAT  345

seq1  TTTGATGTTCTAAAATCATATGGAAGCAAATCAGCAATTTCAAAGGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTCTAAAATCATATGGAAGCAAATCAGCAATTTCAAAGGTATG  395

seq1  TAAATGTCAGCAAACCTTGGTTTTACCCCATGCTCTATAATAGGGTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCAGCAAACCTTGGTTTTACCCCATGCTCTATAATAGGGTCAAA  445

seq1  TAACGTACCTCTTTGGGCTCAAAGTCAGGTATATGTGAACATGCTGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTACCTCTTTGGGCTCAAAGTCAGGTATATGTGAACATGCTGTATT  495

seq1  ATTCCTCTGTTCTTCCAATAAGTCACAATTGCTTAAATGATCCAGGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTGTTCTTCCAATAAGTCACAATTGCTTAAATGATCCAGGGCAT  545

seq1  GAGCCATAAGATACACAGCTTGTCTGACATTGTTTGTGATTCTTAGCTGA  600
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGCCATAAGATACACAGCTTGTCTGACATTGTTTGTGATTCTTAGGTGA  595

seq1  GATGTATCCAGATAGGTGTTTTTCAGATCTTCCAGTTTCTCCTCTCCAGT  650
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATGTATCCAGATAGGTGTTTTTCAGATTTTCCAGTTTCTCCTCTCCAGT  645

seq1  GCAGAGCTGATCAGACATGTCATACAGTCTGTCTTCTTTACCAGTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTGATCAGACATGTCATACAGTCTGTCTTCTTTACCAGTCATAT  695

seq1  TCACTCTGTGGTCCACATTGTAAGGCACACTGTTGTTGGGCCAGGTACAG  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCACTCTGTGGTCCACATTGTAAGGCACACTGTTGTTGGGCCCGGTACAG  745

seq1  TTAAAAGCAGTTTGCCAGAATTCAATGGTCAAGACATCATTTGGATCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCAGTTTGCCAGAATTCAATGGTCAAGACATCATTTGGATCCTT  795

seq1  GCTAGGGTGTACATCATAAAGGAATTC  827
      | |||||||||||||||||||||||||
seq2  GTTAGGGTGTACATCATAAAGGAATTC  822