BAC Information

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BAC

Clone NameB6Ng01-027E01
Chromosome3 (Build37)10 (Build37)
Map Location 133,589,749 - 133,590,674104,054,901 - 104,055,480
singlet/doubletsingletsinglet
Overlap geneLOC100039168
Upstream geneNpnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205
Downstream geneLOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027E01.bB6Ng01-027E01.g
ACCDH858048DH858049
length9141,000
definitionDH858048|Mus musculus domesticus DNA, BAC clone: B6Ng01-027E01, 5' end.DH858049|Mus musculus domesticus DNA, BAC clone: B6Ng01-027E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(133,589,749 - 133,590,674)(104,054,901 - 104,055,480)
sequence
gaattccacaactgttctccattgatgaggtctgcttctggccatggaga
atagcatcatcttctattgagagtttgcattggtatgtcattcccattta
cacagtcaggggctagccctccctctctccaccattgcctacagagtgtt
atttcagggtcctgtgaagttcagactcccttgtttgtgattgctcttca
ttctcaggcatcccagggtagctcagtcttaagcagtatgttccttctca
agatgacatctgactattgctgtctgagccccatagagtgacaaaatgcc
attcctctccagtgctgacccagctgatgaggaaatcactacttcagtaa
aaactgctgttatatttgagaattgtgagctttggaattctcatgaaggt
agaaccaccaataccccagggactccaggggtgagacttttgtctctcat
cattgccagggagacaaaggctaagctgtactaaaggctaaactgtcctc
ttcatctcacttgtccttttctgttcttacccctttaatgcaatctgaag
ttctccatctccttatctctctgatatagagtttactatagtattattac
tactacttacaccatcaccaatgccgccactgccatcattgtcttgactt
ttcctccagatcacataaagaaagcttccagtatgtgaattttttttgtt
acatattttcctcaattacatttccaatgctatccccaaagtcccccata
ccctcccccccacttccctacccacccattcccatttttttttttttttt
ggccctggcattcccctgtactggggcatataagtttgtgttccaatggg
cctctctttccagtgatggcgactaggccatctttgatcatatgcgctag
agccaagactccgg
gaattcctagccagagcaattcgacaacaaaatgagatcaaggggataca
acttggaaaggaagaagtcaaaatatcactttttgcagatgatatgatag
tatataagtgatcttaaaaattccactagagaactcctaaacctgataaa
cagcttcgatgaaatagctggatataaaattaactcaaacaagtcaatgg
cctttcttttttttttttttttttggtatattttacatgaattgtaggtc
ctaaaatttcatctttctctcaggataaggagcttagtacgcttactgaa
acctttagactatctggcttgttccagcgttagatgggtgtgcctgtcgc
tttaacataaacctttgtaaattatgtgtctcattcaaaataggacctca
acaagcactcatggactggtgatctgcattttgtattacaaatatttctt
attttattttattttattttttcccatttttattaggtatttagctcatt
tacatttcctatataccaaaagtcacccatacccaccaccccatcaatgg
cctttctctacacaaagaataaacaggctgagaaagaaattagggaaaca
acacccttctcaatagtcacaaacaatataaaacatcttggcgtgactct
aagacaagaaagatctgtatgataagaacttcaagtctctgaagaaagaa
attaaagaagatctcagaagatggaaagatctcccatgctcatggattgg
caggatcaacattgtaaaaatggctatcttgccaaagcaactacagattc
aatgcaatccccatcaaattccactcattcttcacaattagaaagagcat
ctgcaaattcatctggataacaaaaactagctagcaaaactctctcaagg
ataaaagtactctggtgaatcaccatgctgacctaagcttactacaagca
ttgttataaaactgcatgttactggttagtgacagacagtagaccatgga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_133589749_133590674
seq2: B6Ng01-027E01.b_44_957

seq1  GAATTCCACAACTGTTCTCCATTGATGAGGTCTGCTTCTGGCCATGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAACTGTTCTCCATTGATGAGGTCTGCTTCTGGCCATGGAGA  50

seq1  ATAGCATCATCTTCTATTGAGAGTTTGCATTGGTATGTCATTCCCATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATCATCTTCTATTGAGAGTTTGCATTGGTATGTCATTCCCATTTA  100

seq1  CACAGTCAGGGGCTAGCCCTCCCTCTCTCCACCATTGCCTACAGAGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCAGGGGCTAGCCCTCCCTCTCTCCACCATTGCCTACAGAGTGTT  150

seq1  ATTTCAGGGTCCTGTGAAGTTCAGACTCCCTTGTTTGTGATTGCTCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGGTCCTGTGAAGTTCAGACTCCCTTGTTTGTGATTGCTCTTCA  200

seq1  TTCTCAGGCATCCCAGGGTAGCTCAGTCTTAAGCAGTATGTTCCTTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGCATCCCAGGGTAGCTCAGTCTTAAGCAGTATGTTCCTTCTCA  250

seq1  AGATGACATCTGACTATTGCTGTCTGAGCCCCATAGAGTGACAAAATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACATCTGACTATTGCTGTCTGAGCCCCATAGAGTGACAAAATGCC  300

seq1  ATTCCTCTCCAGTGCTGACCCAGCTGATGAGGAAATCACTACTTCAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTCCAGTGCTGACCCAGCTGATGAGGAAATCACTACTTCAGTAA  350

seq1  AAACTGCTGTTATATTTGAGAATTGTGAGCTTTGGAATTCTCATGAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTGTTATATTTGAGAATTGTGAGCTTTGGAATTCTCATGAAGGT  400

seq1  AGAACCACCAATACCCCAGGGACTCCAGGGGTGAGACTTTTGTCTCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACCAATACCCCAGGGACTCCAGGGGTGAGACTTTTGTCTCTCAT  450

seq1  CATTGCCAGGGAGACAAAGGCTAAGCTGTACTAAAGGCTAAACTGTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCAGGGAGACAAAGGCTAAGCTGTACTAAAGGCTAAACTGTCCTC  500

seq1  TTCATCTCACTTGTCCTTTTCTGTTCTTACCCCTTTAATGCAATCTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCACTTGTCCTTTTCTGTTCTTACCCCTTTAATGCAATCTGAAG  550

seq1  TTCTCCATCTCCTTATCTCTCTGATATAGAGTTTACTATAGTATTATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATCTCCTTATCTCTCTGATATAGAGTTTACTATAGTATTATTAC  600

seq1  TACTACTTACACCATCACCAATGCCGCCACTGCCATCATTGTCTTGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTTACACCATCACCAATGCCGCCACTGCCATCATTGTCTTGACTT  650

seq1  TTCCTCCAGATCACATAAAGAAAGCTTCCAGTATGTGAATTTTTTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAGATCACATAAAGAAAGCTTCCAGTATGTGAATTTTTTTTGTT  700

seq1  ACATATTTTCCTCAATTACATTTCCAATGCTATCCCCAAAGTCCCCCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTCCTCAATTACATTTCCAATGCTATCCCCAAAGTCCCCCATA  750

seq1  CCCTCCCCCCCACTTCCCTACCCACCCATTCCCATTTTTTTTTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||     |||||||||||
seq2  CCCTCCCCCCCACTTCCCTACCCACCCATTCCCA-----TTTTTTTTTTT  795

seq1  TTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGTGTTTC  850
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATAT-AAGTTTGTG-TTC  843

seq1  CAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACA  900
      |||||||||||||||||||||||||| ||||||||||||| |||||| ||
seq2  CAATGGGCCTCTCTTTCCAGTGATGG-CGACTAGGCCATC-TTTGAT-CA  890

seq1  TATGCAGCTAGAGCCAAGAACTCCGG  926
      ||||| |||||||||||| |||||||
seq2  TATGC-GCTAGAGCCAAG-ACTCCGG  914

seq1: chr10_104054901_104055480
seq2: B6Ng01-027E01.g_167_1066 (reverse)

seq1  TCCATTGGTCTACTTGTCTGTCGCTATACAAGTACCATGCAGTTTTTATC  50
      |||| |||||||| |||||||| ||| || |||| ||||||| |||||| 
seq2  TCCA-TGGTCTAC-TGTCTGTCACTA-ACCAGTAACATGCAG-TTTTATA  46

seq1  ACAATTGCTCTGTAGTACAGTTTTAGGTCCGGGATGGTGATTCCACCAGA  100
      |||| |||| ||||||| ||  |||||| | | ||||||||| |||||||
seq2  ACAA-TGCT-TGTAGTA-AG-CTTAGGT-CAGCATGGTGATT-CACCAGA  90

seq1  GGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTAT  150
       || |||||||||||||| |||| ||||||||  ||||  ||||||||| 
seq2  -GTACTTTTATCCTTGAG-AGAG-TTTTGCTA-GCTAG--TTTTTGTTA-  133

seq1  TCCAGATGAATCTGCCGATTGCCCTTTATAATTCTTTGAAGAATTGAGTT  200
      ||||||||||| ||| || ||| |||| ||||  | ||||||| |||| |
seq2  TCCAGATGAATTTGCAGA-TGCTCTTTCTAAT--TGTGAAGAA-TGAG-T  178

seq1  GGAATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAGAT  250
      |||| |||||||||||||||||||||||||||| |||| |||||||||||
seq2  GGAA-TTTGATGGGGATTGCATTGAATCTGTAG-TTGC-TTTGGCAAGAT  225

seq1  AGCCATTTTTACTATATTGATCCTGCCGATCCATGAGCATGGGAGATCTT  300
      |||||||||||| || ||||||||||| ||||||||||||||||||||||
seq2  AGCCATTTTTACAATGTTGATCCTGCCAATCCATGAGCATGGGAGATCTT  275

seq1  TCCATCTTCTGAGATCTTCTTTAATTTCTTTCTTCAGAGACATGAAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCATCTTCTGAGATCTTCTTTAATTTCTTTCTTCAGAGACTTGAAGTTC  325

seq1  TTGTCATACAGATCTTTCACTTCCTTAGTTAGAGTCACGCCAAGGAATTT  400
      || |||||||||||||||   ||     ||||||||||||||||   |||
seq2  TTATCATACAGATCTTTCTTGTC-----TTAGAGTCACGCCAAGATGTTT  370

seq1  TATATTATTTGTGGCTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCT  450
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  TATATTGTTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCT  420

seq1  CAGCCTGTTTGTCCTTTGTGTAGAGAAAGCCCATTGA--------CTTGT  492
      |||||||||| | |||||||||||||||| |||||||           ||
seq2  CAGCCTGTTTATTCTTTGTGTAGAGAAAGGCCATTGATGGGGTGGTGGGT  470

seq1  TTGAGTTAATTT---TATAT------------CCAGCTACTT---CACTG  524
       || || | |||   |||||              |||||  |    | | 
seq2  ATGGGTGACTTTTGGTATATAGGAAATGTAAATGAGCTAAATACCTAATA  520

seq1  AAGCTG----------------------------TATATTAG--------  538
      ||  ||                             ||||| |        
seq2  AAAATGGGAAAAAATAAAATAAAATAAAATAAGAAATATTTGTAATACAA  570

seq1  ------GTTTAGGAGTTC------TCTGGTTGA------ATTTTTA--GG  568
            | | |  ||| |       || |||||      ||||| |  | 
seq2  AATGCAGATCACCAGTCCATGAGTGCTTGTTGAGGTCCTATTTTGAATGA  620

seq1  GTCAC-TTATATA-------------------------------------  580
      | ||| | || ||                                     
seq2  GACACATAATTTACAAAGGTTTATGTTAAAGCGACAGGCACACCCATCTA  670

seq1  --------------------------------------------------  580
                                                        
seq2  ACGCTGGAACAAGCCAGATAGTCTAAAGGTTTCAGTAAGCGTACTAAGCT  720

seq1  --------------------------------------------------  580
                                                        
seq2  CCTTATCCTGAGAGAAAGATGAAATTTTAGGACCTACAATTCATGTAAAA  770

seq1  --------------------------------------------------  580
                                                        
seq2  TATACCAAAAAAAAAAAAAAAAAAGAAAGGCCATTGACTTGTTTGAGTTA  820

seq1  --------------------------------------------------  580
                                                        
seq2  ATTTTATATCCAGCTATTTCATCGAAGCTGTTTATCAGGTTTAGGAGTTC  870

seq1  ------------------------------  580
                                    
seq2  TCTAGTGGAATTTTTAAGATCACTTATATA  900