BAC Information

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BAC

Clone NameB6Ng01-027O12
Chromosome3 (Build37)10 (Build37)
Map Location 13,639,704 - 13,640,788104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap gene0710005M24Rik
Upstream geneEG668033, LOC668037, LOC100039823, LOC100039861, LOC100041679
Downstream geneLOC100041667, LOC100039882, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027O12.bB6Ng01-027O12.g
ACCDH858524DH858525
length1,077986
definitionDH858524|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O12, 5' end.DH858525|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,639,704 - 13,640,788)(104,053,903 - 104,054,363)
sequence
gaattccaccataaaaaatagaaaaaaaatagaacttttcttagtaatga
ataaaaaaaataatagtgagagttagtaaatggcagaaaaacatttaaag
gcactttaaaattcaaatacaacatacaaataaaattagagtgtataaat
tgacactttatgtgctttttgtgatacataaattgttggtagtactttat
tccacatcttaaagatagaaaattgagtataaaattttaaaataatttct
ctagtagcaggtagtcaaaactatataaatagatctactttgtatttaaa
ctttttaaaaaacccaaactgctggcagcactgaaagggaactgctgcat
gttgttgtagaaaatggaatgtggccagctgcccatcaatgcatactcta
gaacacgcaacctgctagctatggttgcaaagctctgaatgaagaatctc
ctactgtttaatgttgtctacttcttacaacctacagcttagataatgaa
atagaggtttagaatgtgagtcatgtcttcctcataagcagcaagtctag
cacctagacacatccaactaactggaaatgccacacctctgaattgtaca
aacagattatatctactagggaaatagtttgaaataaaaatctttccaca
aacccaaagctgatacatttccaattgcttagtcacctgctagaatttcc
tgtagttttttagggtttgtcagcatctgggagacatttcacccgttttg
attttacaaaggcaagtaatttgctaagcacactccttagtacatataag
aactgttctcccaggttattgtcatgaatttgacaagtgttcatttagtg
tgtacaatgtctcagacagtcttttaagtactagagaatataacgaccaa
actctggcttgagttgaacttctgcagtttttctttcattatttattctg
ttctagtgattcactaccagaactgctttgattttattgtatatccatct
acctccctattcctgctacctttgaccctgtgggatcattgagtttggac
tccatttcatcctcccataccgcctaa
gaattctcacctgaggaataccgaatggctgagaagcacctgacaaaaat
gttcaacatccttaatcatcagggaaatgcaaattaaaacaacactgaaa
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggtgaggatgtggagaaagaggaacactcctccattgttgct
ggtattgcaagcttgtacaaccactctggaaatcagtctggaggtttctc
aaataattggacataatactacaggaggatcccgcaatacctctcctggg
catatattcagaagatgtcccaaccagtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagagtaatggatacagaaaatgtggtacattacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagtccatcctgagtgaggtaactcaatcacaaaaga
actcacatgatatgtactcatcgataagtggatattagcccagaaactta
gaatacccaagatataagatacaatttgctaaacacatgaagctcgggaa
gaacaaagaccaaggtgtggacagtttgccccttcttagatttgggaaca
aaacacccatggaaggagttacagagacaaattgtggagttgtgacgaaa
ggatggaccatctagaggccgccatatccgggatccatcccatagtcagc
ctcaaaacgctgacaccattgcatacactagcaagattttgctgaaagga
ccttgatatagctgtctcttgtgagactatgcagggcctagcaaacacag
aagtggatgctcacagtcagctgttggatggatcacagggcccccaatgg
aggagctggaggaagtacctagggagctggggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13639704_13640788
seq2: B6Ng01-027O12.b_46_1122

seq1  GAATTCCACCATAAAAAATAGAAAAAAAATAGAACTTTTCTTAGTAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCATAAAAAATAGAAAAAAAATAGAACTTTTCTTAGTAATGA  50

seq1  ATAAAAAAAATAATAGTGAGAGTTAGTAAATGGCAGAAAAACATTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAATAATAGTGAGAGTTAGTAAATGGCAGAAAAACATTTAAAG  100

seq1  GCACTTTAAAATTCAAATACAACATACAAATAAAATTAGAGTGTATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTAAAATTCAAATACAACATACAAATAAAATTAGAGTGTATAAAT  150

seq1  TGACACTTTATGTGCTTTTTGTGATACATAAATTGTTGGTAGTACTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTTATGTGCTTTTTGTGATACATAAATTGTTGGTAGTACTTTAT  200

seq1  TCCACATCTTAAAGATAGAAAATTGAGTATAAAATTTTAAAATAATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCTTAAAGATAGAAAATTGAGTATAAAATTTTAAAATAATTTCT  250

seq1  CTAGTAGCAGGTAGTCAAAACTATATAAATAGATCTACTTTGTATTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGCAGGTAGTCAAAACTATATAAATAGATCTACTTTGTATTTAAA  300

seq1  CTTTTTAAAAAACCCAAACTGCTGGCAGCACTGAAAGGGAACTGCTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAAAACCCAAACTGCTGGCAGCACTGAAAGGGAACTGCTGCAT  350

seq1  GTTGTTGTAGAAAATGGAATGTGGCCAGCTGCCCATCAATGCATACTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTAGAAAATGGAATGTGGCCAGCTGCCCATCAATGCATACTCTA  400

seq1  GAACACGCAACCTGCTAGCTATGGTTGCAAAGCTCTGAATGAAGAATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGCAACCTGCTAGCTATGGTTGCAAAGCTCTGAATGAAGAATCTC  450

seq1  CTACTGTTTAATGTTGTCTACTTCTTACAACCTACAGCTTAGATAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTTAATGTTGTCTACTTCTTACAACCTACAGCTTAGATAATGAA  500

seq1  ATAGAGGTTTAGAATGTGAGTCATGTCTTCCTCATAAGCAGCAAGTCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGTTTAGAATGTGAGTCATGTCTTCCTCATAAGCAGCAAGTCTAG  550

seq1  CACCTAGACACATCCAACTAACTGGAAATGCCACACCTCTGAATTGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGACACATCCAACTAACTGGAAATGCCACACCTCTGAATTGTACA  600

seq1  AACAGATTATATCTACTAGGGAAATAGTTTGAAATAAAAATCTTTCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTATATCTACTAGGGAAATAGTTTGAAATAAAAATCTTTCCACA  650

seq1  AACCCAAAGCTGATACATTTCCAATTGCTTAGTCACCTGCTAGAATTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAGCTGATACATTTCCAATTGCTTAGTCACCTGCTAGAATTTCC  700

seq1  TGTAGTTTTTTAGGGTTTGTCAGCATCTGGGAGACATTTCACCCGTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTTTTAGGGTTTGTCAGCATCTGGGAGACATTTCACCCGTTTTG  750

seq1  ATTTTACAAAGGCAAGTAATTTGCTAAGCACACTCCTTAGTACATATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAAAGGCAAGTAATTTGCTAAGCACACTCCTTAGTACATATAAG  800

seq1  AACTGTTCTCCCAGGTTATTGTCATGAATTTGACAAGTGTTCATTTAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCTCCCAGGTTATTGTCATGAATTTGACAAGTGTTCATTTAGTG  850

seq1  TGTACAATGTCTCAGACAGTCTTTTAAGTACTAGAGAATATAACGACCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATGTCTCAGACAGTCTTTTAAGTACTAGAGAATATAACGACCAA  900

seq1  ACTCTGGCTTGAGTTGAACTTCTGCAGTTTTTCTTTCATTATTTATTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGCTTGAGTTGAACTTCTGCAGTTTTTCTTTCATTATTTATTCTG  950

seq1  TTCTAGTGATTCACTACCAGAACTGCTTTGATTTTATATGTATATTCCAT  1000
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  TTCTAGTGATTCACTACCAGAACTGCTTTGATTTTAT-TGTATA-TCCAT  998

seq1  CTACCTTCACTTATTCCTGCTACCTTTTGTACCCCTGTGGGATCAGTTGA  1050
      ||||||   | |||||||||||||||   |  ||||||||||||| ||||
seq2  CTACCT--CCCTATTCCTGCTACCTT---TGACCCTGTGGGATCA-TTGA  1042

seq1  GTTT-GACTCATTTTCATTCCTCACATACCGCCTAA  1085
      |||| |||||  ||||| ||||| ||||||||||||
seq2  GTTTGGACTCCATTTCA-TCCTCCCATACCGCCTAA  1077

seq1: chr10_104053903_104054363
seq2: B6Ng01-027O12.g_69_539 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||| ||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGT-AATGTACCACATTTTCTGTA  49

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTACTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  99

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACTGGT  149

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||| ||||||||| |||||||||||| ||||||||||| ||||||||| 
seq2  TGGGACATCTTCTGAATATATGCCCAGGAGAGGTATTGCGGGATCCTCCT  199

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||| ||||||||||| | |||  |||| |||||| ||||||||||||
seq2  GTAGTATTATGTCCAATTATTTGAGAAACCTCCAGACTGATTTCCAGAGT  249

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||| ||| ||||||||||||||||||||||||||
seq2  GGTTGTACAAGCTTGCAATACCAGCAACAATGGAGGAGTGTTCCTCTTTC  299

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  349

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||| |||| |||||||| ||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATTTCAGTGTTGTTTTAATTTGCATTTCC  399

seq1  CTGATGATTAAGGATGTTGAACATTTTT-TCAGGTGCTTCTCTGCCATTC  439
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTGTCAGGTGCTTCTCAGCCATTC  449

seq1  GGTATTCCTCAGGTGAGAATTC  461
      ||||||||||||||||||||||
seq2  GGTATTCCTCAGGTGAGAATTC  471