BAC Information

Click to search

BAC

Clone NameB6Ng01-028E14
Chromosome10 (Build37)
Map Location 85,347,133 - 85,348,307
singlet/doubletsinglet
Overlap genePwp1
Upstream geneRfx4, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940
Downstream genePrdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028E14.bB6Ng01-028E14.g
ACCDH858804DH858805
length1,1551,254
definitionDH858804|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E14, 5' end.DH858805|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaactcacaatggtgctctgttaccatttcactaaaataaacg
taaccctggcatgcaatgtgtgcagatcggtggctctgtatgactgcaga
gatcccagccagaaccaccgccagtggcggttcagtgggcagatcgagag
agtgacctggaaccacttctcaccgtgtcatttcttggtaagaatatgca
ttgttttttctaattccattatagagagattgttagaaaagcattttctc
tgctagtgtgatgtttctgggtcttagaattgaaaaactaaagttaacaa
tacaaaaaaaaaaaaacttagtttgtgaattagctaattttcaactattc
cattgggctacattttttttctatttttaaatcattttactacttatagt
atttttgaaatactaatcataataatattctaatcataataatattctgt
tgtctcaaggttttgatacaggatcgtgtagcccaggctggccttgacct
tgcaaatcttcctccttctacctatttttggtgttttttaatggctaaat
cagtccaaaagatgcttaattccttatgtgtagattaaacttgagagatg
aggattgccagtgattattagcactgtctaccaaatgggaagaaagtaag
gcttttctaaacgttcactaacatcagccaaacagaactcagtcctagtg
ttacaagggatgcctgtctcccaccactgctgtattggtgctgctgtgta
tagagctttaggtctctctcatctgtctttgctctctgattcttaagaac
attaacagcttatttccatgtcactccaccgctatggcaatattgagacc
tgatctgaccatgccattcttaagttccttactggttccaacatccatct
tccttcttcagctgctcctcctctgtgtgctctcagctcaccagcactct
ggtgcagctcgatgctcttcagttacacacacacacacacacacacacac
acacatgttcccttctgcccttgggcaatgactgccatttctgtgttcac
actccaacccagctctttctgcttcatgacataagctcattcaaaataag
ttcttgttcagtcacaaataacgatcttaggttacctaatactcctccat
ggcca
gaattcctaacttaaagaaggaaatgtctataaaagtaggagcatacaga
acaccaagtggattggtccagaaaagaaagtccccttgccacataataat
gaaaacattaacatacagaacaaagaaagaatattaaaagctacaaggaa
aaaaagaccaagtaatatatagaggcaggcctattagaattatgactgac
ttctcaatggggattctaaaagtcaggaggtcctgaataaatgtgcctaa
aagaccagagatgccaggtcagactgctataccctgctaaactttcaacc
accaaagatggaggaaataagatactcaatgatacagccaaatttaaaca
atatctatctacaaatccaacctacaaaaggtgctagaaggaaaacttcc
cctcctgaaaaggttaactacacctatgaaaacaagaaagaaaaaaaaaa
aaaactcacaccagcaaaataaaaaaaagcaaaagtgtacatgcacacac
gcgtacacacacacacacacaaaatataaccaacaaaaacaatgaaatca
gtgatcattggtcattgatctccctcaatatcaatggtctcaatttcttc
aataaaagacacagactaacagaatagatgtgaaaacaagatctctgatc
ctactgcatccaagaaataatacttcaacatcaaggaaagatattacctc
aggttaagagttggaaaataatatactaaatggacctaagaaacaagcca
ttttaatatttaacaaaatacacttcaaaccaaaaataatcaaaagagac
ggggaaggacacttttcaaaaaagaaaaaaaaaatccaccaaaatgacat
ttcagttcttaacatctatgcccaaacacaaaggtagctgagattgtgaa
aagaaacactactacagcttaaatcatatattgacccttacacactaata
aggagagacttcatacccacattacctggacatttatctagacgaaacca
acaaaaatgtggagttaccaatgttataaacaaatagatcttacagttaa
ggacatttatcccaacacagaaaaaaataccttcttcttcagcccctcat
gggacttggttgcaattactcattcataagcaagtctcatagaccaagaa
actgaattatctcgcatgatggaccacttgatatgataaccacgaacact
taagctcacaaccgtgggaaccaaacactctctctgatagtaaatggtgt
gtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_85347133_85348307
seq2: B6Ng01-028E14.b_46_1200

seq1  GAATTCTGAACTCACAATGGTGCTCTGTTACCATTTCACTAAAATAAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACTCACAATGGTGCTCTGTTACCATTTCACTAAAATAAACG  50

seq1  TAACCCTGGCATGCAATGTGTGCAGATCGGTGGCTCTGTATGACTGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGGCATGCAATGTGTGCAGATCGGTGGCTCTGTATGACTGCAGA  100

seq1  GATCCCAGCCAGAACCACCGCCAGTGGCGGTTCAGTGGGCAGATCGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGCCAGAACCACCGCCAGTGGCGGTTCAGTGGGCAGATCGAGAG  150

seq1  AGTGACCTGGAACCACTTCTCACCGTGTCATTTCTTGGTAAGAATATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCTGGAACCACTTCTCACCGTGTCATTTCTTGGTAAGAATATGCA  200

seq1  TTGTTTTTTCTAATTCCATTATAGAGAGATTGTTAGAAAAGCATTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTCTAATTCCATTATAGAGAGATTGTTAGAAAAGCATTTTCTC  250

seq1  TGCTAGTGTGATGTTTCTGGGTCTTAGAATTGAAAAACTAAAGTTAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGTGATGTTTCTGGGTCTTAGAATTGAAAAACTAAAGTTAACAA  300

seq1  TACAAAAAAAAAAAAACTTAGTTTGTGAATTAGCTAATTTTCAACTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAAAAAAAAACTTAGTTTGTGAATTAGCTAATTTTCAACTATTC  350

seq1  CATTGGGCTACATTTTTTTTCTATTTTTAAATCATTTTACTACTTATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGCTACATTTTTTTTCTATTTTTAAATCATTTTACTACTTATAGT  400

seq1  ATTTTTGAAATACTAATCATAATAATATTCTAATCATAATAATATTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAAATACTAATCATAATAATATTCTAATCATAATAATATTCTGT  450

seq1  TGTCTCAAGGTTTTGATACAGGATCGTGTAGCCCAGGCTGGCCTTGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAGGTTTTGATACAGGATCGTGTAGCCCAGGCTGGCCTTGACCT  500

seq1  TGCAAATCTTCCTCCTTCTACCTATTTTTGGTGTTTTTTAATGGCTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATCTTCCTCCTTCTACCTATTTTTGGTGTTTTTTAATGGCTAAAT  550

seq1  CAGTCCAAAAGATGCTTAATTCCTTATGTGTAGATTAAACTTGAGAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAAAAGATGCTTAATTCCTTATGTGTAGATTAAACTTGAGAGATG  600

seq1  AGGATTGCCAGTGATTATTAGCACTGTCTACCAAATGGGAAGAAAGTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGCCAGTGATTATTAGCACTGTCTACCAAATGGGAAGAAAGTAAG  650

seq1  GCTTTTCTAAACGTTCACTAACATCAGCCAAACAGAACTCAGTCCTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTAAACGTTCACTAACATCAGCCAAACAGAACTCAGTCCTAGTG  700

seq1  TTACAAGGGATGCCTGTCTCCCACCACTGCTGTATTGGTGCTGCTGTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGGATGCCTGTCTCCCACCACTGCTGTATTGGTGCTGCTGTGTA  750

seq1  TAGAGCTTTAGGTCTCTCTCATCTGTCTTTGCTCTCTGATTCTTAAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTTTAGGTCTCTCTCATCTGTCTTTGCTCTCTGATTCTTAAGAAC  800

seq1  ATTAACAGCTTATTTCCATGTCACTCCACCGCTATGGCAATATTGAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAGCTTATTTCCATGTCACTCCACCGCTATGGCAATATTGAGACC  850

seq1  TGATCTGACCATGCCATTCTTAAGTTCCTTACTGGTTCCCAACATCCATC  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGATCTGACCATGCCATTCTTAAGTTCCTTACTGGTT-CCAACATCCATC  899

seq1  TTCCTTCCTCCAGCTGCCTCCTCCTCCTGTGTGCTCCTCAGCTCACCAGC  950
      |||||| || |||||| |||||||| ||||||||| ||||||||||||||
seq2  TTCCTT-CTTCAGCTG-CTCCTCCT-CTGTGTGCT-CTCAGCTCACCAGC  945

seq1  ACTCTGGTGCCAGCCCGATGCTCTTCAGTTACACACACACACACACACAC  1000
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTG-CAGCTCGATGCTCTTCAGTTACACACACACACACACACAC  994

seq1  ACACACACACCATGTTCCCCTTCTGCCCTTGGGCAGTGACTGCCATTTCT  1050
      ||||||||| |||||| |||||||||||||||||| ||||||||||||||
seq2  ACACACACA-CATGTT-CCCTTCTGCCCTTGGGCAATGACTGCCATTTCT  1042

seq1  GTGTTTCCACAACTCCAACCCAGCTCTTTCCTGCTTCATGAGCAT-AGCT  1099
      |||||  ||| |||||||||||||||||| ||||||||||| ||| ||||
seq2  GTGTT--CAC-ACTCCAACCCAGCTCTTT-CTGCTTCATGA-CATAAGCT  1087

seq1  CATTCAAAAGTAAGTTCTTGTGTTCAAGTCACAGATAAACAGATCTTAGT  1149
      ||||||||| ||||||||  ||||| ||||||| ||||   |||||||| 
seq2  CATTCAAAA-TAAGTTCT--TGTTC-AGTCACAAATAA--CGATCTTAG-  1130

seq1  GTAACTTATATACTCCTCCATTGCCA  1175
      || || || |||||||||||| ||||
seq2  GTTACCTA-ATACTCCTCCATGGCCA  1155