BAC Information

Click to search

BAC

Clone NameB6Ng01-028L09
Chromosome10 (Build37)
Map Location 73,319,701 - 73,456,362
singlet/doubletdoublet
Overlap genePcdh15
Upstream geneLOC432471, LOC544705, LOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028L09.bB6Ng01-028L09.g
ACCDH859119DH859120
length1,1611,141
definitionDH859119|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L09, 5' end.DH859120|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,455,196 - 73,456,362)(73,319,701 - 73,320,638)
sequence
gaattcaaagactttctgtttactttgaaaatttggttaattactctcta
tcccactttacttcaagaagtggaagacagttacatcacctatattttca
ggacaaacaaatatatctcaaagaaaaattacaggtttaggcatgtggac
agtgctcagtgaatacaagaaggcacttgaaaagaaaagatggaggtcat
catttgaaaatgcctttatactttgacctctaagagggaagaggcataca
aacctatacttgtaagccatccaagcagaaatcacaccagagattcagcc
ataacatcagattttgaatgcagccaacaactgcagtccacactggccag
ttacatcagtggctttcattacacatctggaaagaatgggattgcctttt
gttttctgctctctgcatgtacatgcatccaaatggacccttggagctat
aattaagcacctgcaaaatcaccctatcgcaggcagatctatttgttaaa
tagcttcaagttaaaatgctatgcaaaaagtatatcgcctaagtgtatct
gtcaattccatccattgtaacttaagaattacatgaaaactggatgggaa
acattggctctggagacatattttccttatgcattgctttattttattta
ttgggaaataaatttagtactgccttattaatcaggaaacagtgccatat
gaatctggcatatatgcactttcaaactgatcaaaaggtgtgtactgtga
ccggacagtttaccaattacctaagtgttaaataaaaaattcaaaagcaa
atatacttcattaaagcagtatagctattaccaagagtattctcttaaat
gtgaaatgcatgattcaattcacaatgctgataaaatcacctcgatccta
tatcgttcacagtgaggtggttcaaatctttcttttgctcataatgtctt
ctttagcgtgtgagcttttatttttttattatcctttactaagcatctgc
ttgatttctcctccaacagaccggaccctacatttttttcctatctactg
tctttgtagagtacagcttctctactcctatcaccatctcctcactatgt
tgtataagtaaatctgctagaacttcttggggtggacagtagaatcagct
gttgtaaatac
gaattcacgcagttgaatccttctcaacagtctgtgttgtgggaacactt
cattaccaccgttccccagctgaagagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaacctttattaccatgacccgcagtt
ctggttccggaatgagggatcttccttgcgccggtgatggtaaccgtcct
gggttttctcgtcctaggtcttctcgtcccaggtcttctcgtcccaggtc
ttctcgtcctaggtcttctcgtcccgtcccgggtctcagcaccaactctt
acacgcgttctcgcaaccggccaggaagaacgcaacaaactggaatcttc
tgcggcaaaagctttattgcttacatcttcaggagccagagagcaagaga
gcaagagccagagcaagagagagaaaaagaacaagaacaagaaagcaaga
gagagaaagcaagagcaagaaaaagaacaagaacaagaaagcaagagaga
gaaaaagaatggcaaaaccccgtcccttttaaggagaattatcctccgcc
taggacgtattactccctgattggctgcagcccatcggctcagttgtcat
cacgagaaaggcagaacacatggcgggaaaactgcccctgcacgtgtgca
gattatgtttactacttagaacacagctgtcagcgccatcttataatggc
aaatgtgagggcggctccccacatcacagggtggaaaagttcaatgaaag
cagaagctaagcgacgcatgtgcgcaaaggcacaaacggaaatggtattt
atggggcttctatgatatttgctgatctcggttgtgtgctgccaggcctg
ctgaatcatgtggataattgaaggcaaaaagtgctttagaaagatgtaaa
gtaagaacaagtcatagcacaaaggaatgaaaaacatatttatcaaagac
ctttttcccagagttgtgaacaagcataacctattcatctgtcatctttt
tctctgtaaacggtcctttcttctcgctttttacatagattcagactcta
gcctcagtgtactcctgtgatgataagagaattatcaaacgattgttatg
agaatgtatagattctggcttattaaagggggtcaaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_73455196_73456362
seq2: B6Ng01-028L09.b_44_1204 (reverse)

seq1  GTATTTATCAACAGCTTGATTCTAACTGTCCA-CCCAAGAAGATCTAGCA  49
      ||||||| ||||||| ||||||| |||||||| ||||||||| |||||||
seq2  GTATTTA-CAACAGC-TGATTCT-ACTGTCCACCCCAAGAAGTTCTAGCA  47

seq1  GATTTACTTTATAC-ACATAGTGAAGAGATGGTGATAGGAGTTAGAG-AG  97
      ||||||| |||||| ||||||||| |||||||||||||||| ||||| ||
seq2  GATTTAC-TTATACAACATAGTGAGGAGATGGTGATAGGAG-TAGAGAAG  95

seq1  CTGTACTCTACAAAGACAGTAGATAGGAAAAAAAATGTAGGGTCCGGTCT  147
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGTACTCTACAAAGACAGTAGATAGG-AAAAAAATGTAGGGTCCGGTCT  144

seq1  GGTTGGAGGAGAAATCAAGCAGATGCTTAGTAAAGGATAATAAAAAAAAA  197
       ||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  -GTTGGAGGAGAAATCAAGCAGATGCTTAGTAAAGGATAAT--AAAAAAA  191

seq1  TAAAAGCTCACACGCTAAAGAAGACATTATGAGCAAAAGAAAGATTTGAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTCACACGCTAAAGAAGACATTATGAGCAAAAGAAAGATTTGAA  241

seq1  CCACCTCACTGTGAACGATATAGGATCGAGGTGATTTTATCAGCATTGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCACTGTGAACGATATAGGATCGAGGTGATTTTATCAGCATTGTG  291

seq1  AATTGAATCATGCATTTCACATTTAAGAGAATACTCTTGGTAATAGCTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATCATGCATTTCACATTTAAGAGAATACTCTTGGTAATAGCTAT  341

seq1  ACTGCTTTAATGAAGTATATTTGCTTTTGAATTTTTTATTTAACACTTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTAATGAAGTATATTTGCTTTTGAATTTTTTATTTAACACTTAG  391

seq1  GTAATTGGTAAACTGTCCGGTCACAGTACACACCTTTTGATCAGTTTGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGGTAAACTGTCCGGTCACAGTACACACCTTTTGATCAGTTTGAA  441

seq1  AGTGCATATATGCCAGATTCATATGGCACTGTTTCCTGATTAATAAGGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATATATGCCAGATTCATATGGCACTGTTTCCTGATTAATAAGGCA  491

seq1  GTACTAAATTTATTTCCCAATAAATAAAATAAAGCAATGCATAAGGAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAATTTATTTCCCAATAAATAAAATAAAGCAATGCATAAGGAAAA  541

seq1  TATGTCTCCAGAGCCAATGTTTCCCATCCAGTTTTCATGTAATTCTTAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCCAGAGCCAATGTTTCCCATCCAGTTTTCATGTAATTCTTAAG  591

seq1  TTACAATGGATGGAATTGACAGATACACTTAGGCGATATACTTTTTGCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGGATGGAATTGACAGATACACTTAGGCGATATACTTTTTGCAT  641

seq1  AGCATTTTAACTTGAAGCTATTTAACAAATAGATCTGCCTGCGATAGGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTAACTTGAAGCTATTTAACAAATAGATCTGCCTGCGATAGGGT  691

seq1  GATTTTGCAGGTGCTTAATTATAGCTCCAAGGGTCCATTTGGATGCATGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGCAGGTGCTTAATTATAGCTCCAAGGGTCCATTTGGATGCATGT  741

seq1  ACATGCAGAGAGCAGAAAACAAAAGGCAATCCCATTCTTTCCAGATGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGAGAGCAGAAAACAAAAGGCAATCCCATTCTTTCCAGATGTGT  791

seq1  AATGAAAGCCACTGATGTAACTGGCCAGTGTGGACTGCAGTTGTTGGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGCCACTGATGTAACTGGCCAGTGTGGACTGCAGTTGTTGGCTG  841

seq1  CATTCAAAATCTGATGTTATGGCTGAATCTCTGGTGTGATTTCTGCTTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAAATCTGATGTTATGGCTGAATCTCTGGTGTGATTTCTGCTTGG  891

seq1  ATGGCTTACAAGTATAGGTTTGTATGCCTCTTCCCTCTTAGAGGTCAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTACAAGTATAGGTTTGTATGCCTCTTCCCTCTTAGAGGTCAAAG  941

seq1  TATAAAGGCATTTTCAAATGATGACCTCCATCTTTTCTTTTCAAGTGCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGCATTTTCAAATGATGACCTCCATCTTTTCTTTTCAAGTGCCT  991

seq1  TCTTGTATTCACTGAGCACTGTCCACATGCCTAAACCTGTAATTTTTCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATTCACTGAGCACTGTCCACATGCCTAAACCTGTAATTTTTCTT  1041

seq1  TGAGATATATTTGTTTGTCCTGAAAATATAGGTGATGTAACTGTCTTCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATATTTGTTTGTCCTGAAAATATAGGTGATGTAACTGTCTTCCA  1091

seq1  CTTCTTGAAGTAAAGTGGGATAGAGAGTAATTAACCAAATTTTCAAAGTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGAAGTAAAGTGGGATAGAGAGTAATTAACCAAATTTTCAAAGTA  1141

seq1  AACAGAAAGTCTTTGAATTC  1167
      ||||||||||||||||||||
seq2  AACAGAAAGTCTTTGAATTC  1161

seq1: chr10_73319701_73320638
seq2: B6Ng01-028L09.g_293_1209

seq1  CGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCGTCCTAGGTCTTCTCGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCGTCCTAGGTCTTCTCGTCC  50

seq1  CGTCCCGGGTCTCAGCACCAACTCTTACACGCGTTCTCGCAACCGGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCGGGTCTCAGCACCAACTCTTACACGCGTTCTCGCAACCGGCCAG  100

seq1  GAAGAACGCAACAAACTGGAATCTTCTGCGGCAAAAGCTTTATTGCTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACGCAACAAACTGGAATCTTCTGCGGCAAAAGCTTTATTGCTTAC  150

seq1  ATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAGCCAGAGCAAGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAGCCAGAGCAAGAGAGAGA  200

seq1  AAAAGAACAAGAACAAGAAAGCAAGAGAGAGAAAGCAAGAGCAAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACAAGAACAAGAAAGCAAGAGAGAGAAAGCAAGAGCAAGAAAAA  250

seq1  GAACAAGAACAAGAAAGCAAGAGAGAGAAAAAGAATGGCAAAACCCCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAACAAGAAAGCAAGAGAGAGAAAAAGAATGGCAAAACCCCGTC  300

seq1  CCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGG  350

seq1  CTGCAGCCCATCGGCTCAGTTGTCATCACGAGAAAGGCAGAACACATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCCCATCGGCTCAGTTGTCATCACGAGAAAGGCAGAACACATGGC  400

seq1  GGGAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACTACTTAGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACTACTTAGAACAC  450

seq1  AGCTGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCCCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCCCACAT  500

seq1  CACAGGGTGGAAAAGTTCAATGAAAGCAGAAGCTAAGCGACGCATGTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTGGAAAAGTTCAATGAAAGCAGAAGCTAAGCGACGCATGTGCG  550

seq1  CAAAGGCACAAACGGAAATGGTATTTATGGGGCTTCTATGATATTTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCACAAACGGAAATGGTATTTATGGGGCTTCTATGATATTTGCTG  600

seq1  ATCTCGGTTGTGTGCTGCCAGGCCTGCTGAATCATGTGGATAATTGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGGTTGTGTGCTGCCAGGCCTGCTGAATCATGTGGATAATTGAAGG  650

seq1  CAAAAAGTGCTTTAGAAAGATGTAAAGTAAGAACAAGTCATAGCACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTGCTTTAGAAAGATGTAAAGTAAGAACAAGTCATAGCACAAAG  700

seq1  GAATGAAAAACATATTTATCAAAGACCTTTTTCCCAGGAGTTGTGAACAA  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAATGAAAAACATATTTATCAAAGACCTTTTTCCCA-GAGTTGTGAACAA  749

seq1  GCATAACCTATTCATCTTGTCATCTTTTTCCTCCTGTAAACCGTCCTTTC  800
      |||||||||||||||| |||||||||||||   |||||||| ||||||||
seq2  GCATAACCTATTCATC-TGTCATCTTTTTC--TCTGTAAACGGTCCTTTC  796

seq1  TTCTCGCTTTTTACATAAGATCCAGACTTCCTAGCCTCAGTTGTAACTCC  850
      |||||||||||||||| |||| ||||||  |||||||||| ||| |||||
seq2  TTCTCGCTTTTTACAT-AGATTCAGACT--CTAGCCTCAG-TGT-ACTCC  841

seq1  TGTGATGGATATAGAGATATATCAAACAGATATGTATTGTAGAATGGTAT  900
      |||||| |||| |||||  |||||||| ||| |||  || ||||| ||| 
seq2  TGTGAT-GATA-AGAGAATTATCAAAC-GAT-TGTTATG-AGAAT-GTA-  884

seq1  TAGATACCTGGCTTTAATTAAAGGGGGTACAAAATGAA  938
      |||||  |||||||  ||||||||||||   |||||||
seq2  TAGAT-TCTGGCTT--ATTAAAGGGGGT--CAAATGAA  917