BAC Information

Click to search

BAC

Clone NameB6Ng01-029B18
Chromosome10 (Build37)
Map Location 116,575,082 - 116,613,039
singlet/doubletdoublet
Overlap geneFrs2
Upstream genePtprr, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2
Downstream geneYeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b, Mdm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029B18.bB6Ng01-029B18.g
ACCDH859402DH859403
length1,154288
definitionDH859402|Mus musculus domesticus DNA, BAC clone: B6Ng01-029B18, 5' end.DH859403|Mus musculus domesticus DNA, BAC clone: B6Ng01-029B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,611,869 - 116,613,039)(116,575,082 - 116,575,369)
sequence
gaattccagggaattctcctgcctctgcctcccaccacacgtatggtaag
catgtgccaccacacctggcatttttatttaggtcctagagactgagctt
gggcccccgatgctgacaggcaagattttattgactattttccagtagta
tttctaccctaaaatattttttgtcaaataatacgtgtgtggaaggggta
tgtgcacatgagtgcagatacctgcgggagctacaagagaggagtcaggt
gccctggagttggagtcacaggtggttgtaagccaccagactcaggtgtt
gatcatccaagttagacctttaaaagagtaacgtgcactcggtcagggat
ggtaccacatgcctttagtcctagcagtcagactccagatatttttggca
acagaaagaaaatagattcaagtaattacgacgtaccaaaagtcatcgga
agggactaaaaagaaggcagagggaatttggatctctgtgagttcaaggt
tagcctggtctacatagcaagttccaaggcagccagggctacatagcatc
tcatttaaaaaaaataaaatggtcgtacatgctctttaccattgagccac
ctctccagcagcaggactgtcattcctgtttctcattatactctttcttc
taatgccagtttgctattggtatgttttatgtaaaaatgagacaataccg
tggtggaatagaacacttacccagtaaacacaaggccagggttttgtttc
ccagggccacaatcaatcaacagagataaaaaactcatctgtgcttttta
ttgtgcaggactttccccctttctcctcaaacactgttctctgaggacac
tagtggacccaaagacagactctcctctcctccgtgaagtaagtctgcct
gccggtgtccagggccactagtattaaaggctagagctcttatcgatcaa
tcctcagactttctgattctcaactgtctcaggtccaggggttttcaggc
gcgctctctgcagatagcagcactctcgcacccatccccatgcagtgatg
gcatatcatcccctcactaaggaacagaaatgctcaggaccctggtgggc
gaagaaagaatggatccagtattatggagtacaggtcactgggaaggcct
taaa
caggacagtcaaggctatgaaaagaaaccatgtctcaaaaaaaaaacaaa
caaaaggaaatgatttaaagaaaaaatggggaaggagaggggaggaagga
gggaagaaaaagaaaacttcttttctttgaattcattttatatgcaatca
ctagcacggctcttgaaacctagtgcccttcaagagctacttactgcacc
catcagtagatggactcatggtttaacttgttcattacccaattcctact
agtactaactcacgattaaaggtacaggtggcacatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_116611869_116613039
seq2: B6Ng01-029B18.b_38_1191 (reverse)

seq1  TTTAA-GCCCTCCCAGTGAACTTGGTGACT-CATAATTACTTGGATCTAA  48
      ||||| ||| ||||||||| ||  || ||| ||||| ||| |||||| | 
seq2  TTTAAGGCCTTCCCAGTGACCT--GT-ACTCCATAA-TAC-TGGATCCA-  44

seq1  TTTCTTTCTGTCGCCCA-CAGTGTCTGGAGCATTTTCTGTTTCCTTTAGT  97
       |||||||| ||||||| ||| |||  ||||| ||||||||  | |||||
seq2  -TTCTTTCT-TCGCCCACCAGGGTCCTGAGCA-TTTCTGTT--CCTTAGT  89

seq1  GAAGGGGATGATAATGCCATCACTGCATGGGGGATGGGTTGCGGAGAGTG  147
      | |||||||||| ||||||||||||||| ||||||||| ||| |||||||
seq2  G-AGGGGATGAT-ATGCCATCACTGCAT-GGGGATGGG-TGC-GAGAGTG  134

seq1  CTGGCTATCTGCAGAGAGCGCGCCTGAAAAACCCCTGGACCCTGAGACAG  197
      || ||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  CT-GCTATCTGCAGAGAGCGCGCCTG-AAAACCCCTGGA-CCTGAGACAG  181

seq1  TTGAAGAATCAGAAAGTCTGAGGATTGATCGATAAGAGCTCTAGCCTTTA  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-AGAATCAGAAAGTCTGAGGATTGATCGATAAGAGCTCTAGCCTTTA  230

seq1  ATACTAGTGGCCCTGGACACCGGCAGGCAGACTTACTTCACGGAGGAGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGTGGCCCTGGACACCGGCAGGCAGACTTACTTCACGGAGGAGAG  280

seq1  GAGAGTCTGTCTTTGGGTCCACTAGTGTCCTCAGAGAACAGTGTTTGAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCTGTCTTTGGGTCCACTAGTGTCCTCAGAGAACAGTGTTTGAGG  330

seq1  AGAAAGGGGGAAAGTCCTGCACAATAAAAAGCACAGATGAGTTTTTTATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGGGAAAGTCCTGCACAATAAAAAGCACAGATGAGTTTTTTATC  380

seq1  TCTGTTGATTGATTGTGGCCCTGGGAAACAAAACCCTGGCCTTGTGTTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGATTGATTGTGGCCCTGGGAAACAAAACCCTGGCCTTGTGTTTA  430

seq1  CTGGGTAAGTGTTCTATTCCACCACGGTATTGTCTCATTTTTACATAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAAGTGTTCTATTCCACCACGGTATTGTCTCATTTTTACATAAAA  480

seq1  CATACCAATAGCAAACTGGCATTAGAAGAAAGAGTATAATGAGAAACAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAATAGCAAACTGGCATTAGAAGAAAGAGTATAATGAGAAACAGG  530

seq1  AATGACAGTCCTGCTGCTGGAGAGGTGGCTCAATGGTAAAGAGCATGTAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGTCCTGCTGCTGGAGAGGTGGCTCAATGGTAAAGAGCATGTAC  580

seq1  GACCATTTTATTTTTTTTAAATGAGATGCTATGTAGCCCTGGCTGCCTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTTATTTTTTTTAAATGAGATGCTATGTAGCCCTGGCTGCCTTG  630

seq1  GAACTTGCTATGTAGACCAGGCTAACCTTGAACTCACAGAGATCCAAATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGCTATGTAGACCAGGCTAACCTTGAACTCACAGAGATCCAAATT  680

seq1  CCCTCTGCCTTCTTTTTAGTCCCTTCCGATGACTTTTGGTACGTCGTAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCCTTCTTTTTAGTCCCTTCCGATGACTTTTGGTACGTCGTAAT  730

seq1  TACTTGAATCTATTTTCTTTCTGTTGCCAAAAATATCTGGAGTCTGACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAATCTATTTTCTTTCTGTTGCCAAAAATATCTGGAGTCTGACTG  780

seq1  CTAGGACTAAAGGCATGTGGTACCATCCCTGACCGAGTGCACGTTACTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTAAAGGCATGTGGTACCATCCCTGACCGAGTGCACGTTACTCT  830

seq1  TTTAAAGGTCTAACTTGGATGATCAACACCTGAGTCTGGTGGCTTACAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGTCTAACTTGGATGATCAACACCTGAGTCTGGTGGCTTACAAC  880

seq1  CACCTGTGACTCCAACTCCAGGGCACCTGACTCCTCTCTTGTAGCTCCCG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGACTCCAACTCCAGGGCACCTGACTCCTCTCTTGTAGCTCCCG  930

seq1  CAGGTATCTGCACTCATGTGCACATACCCCTTCCACACACGTATTATTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATCTGCACTCATGTGCACATACCCCTTCCACACACGTATTATTTG  980

seq1  ACAAAAAATATTTTAGGGTAGAAATACTACTGGAAAATAGTCAATAAAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAATATTTTAGGGTAGAAATACTACTGGAAAATAGTCAATAAAAT  1030

seq1  CTTGCCTGTCAGCATCGGGGGCCCAAGCTCAGTCTCTAGGACCTAAATAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGTCAGCATCGGGGGCCCAAGCTCAGTCTCTAGGACCTAAATAA  1080

seq1  AAATGCCAGGTGTGGTGGCACATGCTTACCATACGTGTGGTGGGAGGCAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAGGTGTGGTGGCACATGCTTACCATACGTGTGGTGGGAGGCAG  1130

seq1  AGGCAGGAGAATTCCCTGGAATTC  1171
      ||||||||||||||||||||||||
seq2  AGGCAGGAGAATTCCCTGGAATTC  1154

seq1: chr10_116575082_116575369
seq2: B6Ng01-029B18.g_72_359

seq1  CAGGACAGTCAAGGCTATGAAAAGAAACCATGTCTCAAAAAAAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGTCAAGGCTATGAAAAGAAACCATGTCTCAAAAAAAAAACAAA  50

seq1  CAAAAGGAAATGATTTAAAGAAAAAATGGGGAAGGAGAGGGGAGGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAAATGATTTAAAGAAAAAATGGGGAAGGAGAGGGGAGGAAGGA  100

seq1  GGGAAGAAAAAGAAAACTTCTTTTCTATGAATTCATTTTATATGCAATCA  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGAAGAAAAAGAAAACTTCTTTTCTTTGAATTCATTTTATATGCAATCA  150

seq1  CTAGCACGGCTCTTGAAACCTAGTGCCCTTCAAGAGCTACTTACTGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACGGCTCTTGAAACCTAGTGCCCTTCAAGAGCTACTTACTGCACC  200

seq1  CATCAGTAGATGGACTCATGGTCTAACTTGTTCATTACCCAAGTCCTTCT  250
      |||||||||||||||||||||| ||||||||||||||||||| |||| ||
seq2  CATCAGTAGATGGACTCATGGTTTAACTTGTTCATTACCCAATTCCTACT  250

seq1  AGCACTAACTCAGGATAAAAGGTAGAGGTGGCACAGCC  288
      || ||||||||| ||| ||||||| |||||||||| ||
seq2  AGTACTAACTCACGATTAAAGGTACAGGTGGCACATCC  288