BAC Information

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BAC

Clone NameB6Ng01-029D08
ChromosomeY (Build37)10 (Build37)
Map Location 573,917 - 574,156111,220,174 - 111,220,335
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029D08.bB6Ng01-029D08.g
ACCDH859473DH859474
length324162
definitionDH859473|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D08, 5' end.DH859474|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,917 - 574,156)(111,220,174 - 111,220,335)
sequence
actatgtagaccaacctgaccttgacaactcacagaaatctgcctgcctc
agcctcccaagtggtcctctgcaagagcagtaagtgttcttaaccactga
gccatcttgccagcttcctcatgcacatgcgtgcttgtgtatgtgtaatc
aagtggaggccaggggcccctggcctccacctggcatcttcctcatttgc
ttctttaccttatcttttgagacatgcctcccttactgatttcactgatt
ctgttagactggctggccagcagggcccagaaattgtcttgtcttcacct
ccccagtgctgagttatggtcaca
cattgccagggacacttgttaaagatgggtggcacacagttctgaaatgg
gaggtcttactttccagggaaaagagtcatgtgtgcttgtttgtgtgcgt
gcgagcgtgtgcgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573917_574156
seq2: B6Ng01-029D08.b_84_153

seq1  CAGAAATCTGCCTGCCTCTGCCTCCCAAGCGCTGGGATTAAAGGCGTGCG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCGCCGCCACCTGGCAACTCTATCACTTTTTAAAAAAGATTTATTCATTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CGTGTACGTGACTGTCTTTAAACACGCCCTAGAAAGAGAGCATCAGATCC  150
                                                 ||||   
seq2  -------------------------------------------CAGA---  4

seq1  CTATTATAGATGTTTGTGAGCC-ACCATGTGGTTGCTGGGAATTAAACTG  199
        | | |   ||    | ||||  ||| |||||                 
seq2  --AATCTGCCTG--CCTCAGCCTCCCAAGTGGT-----------------  33

seq1  AGGACCTCTGGAAGTGCCATCAGAGGTCTTAACCACTGAGC  240
          |||||| ||| ||  | || | |||||||||||||||
seq2  ----CCTCTGCAAGAGCAGTAAGTGTTCTTAACCACTGAGC  70

seq1: chr10_111220174_111220335
seq2: B6Ng01-029D08.g_74_235 (reverse)

seq1  CCACACACACACACACACACACACACACACACACACGCACGCACGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACACACACACACACACACACACACACACACGCACGCACGCACAC  50

seq1  GCACACGCTCGCACGCACACAAACAAGCACACATGACTCTTTTCCCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGCTCGCACGCACACAAACAAGCACACATGACTCTTTTCCCTGGA  100

seq1  AAGTAAGACCTCCCATTTCAGAACTGTGTGCCACCCATCTTTAACAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGACCTCCCATTTCAGAACTGTGTGCCACCCATCTTTAACAAGTG  150

seq1  TCCCTGGCAATG  162
      ||||||||||||
seq2  TCCCTGGCAATG  162