BAC Information

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BAC

Clone NameB6Ng01-029L23
Chromosome1 (Build37)10 (Build37)
Map Location 3,473,838 - 3,475,017104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneXkr4, LOC100038975
Upstream genenone
Downstream geneLOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029L23.bB6Ng01-029L23.g
ACCDH859858DH859859
length1,177946
definitionDH859858|Mus musculus domesticus DNA, BAC clone: B6Ng01-029L23, 5' end.DH859859|Mus musculus domesticus DNA, BAC clone: B6Ng01-029L23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,473,838 - 3,475,017)(104,053,903 - 104,054,363)
sequence
gaattccacaggctatctgcattgtcttccattatgactttgatgcattt
catttgaccattctgttcacaatcactgtacaacatctgcttctatattc
tattgtcagctttcatctacctaaaatccaaacaagcagagaatatttca
gcaaacagataagattccaggcctaccaaatggatcagattgtgcagtct
catttctgctggtcattttaatcccattgcccaaagaaaaagtagtctcc
atatgaactttgaccattagtaggaccattagctacctatcaccctgtta
agtgtttcttaattcatcaggggatgcctgatacagagagggaaaggaat
aatacttaaacgtgtaacatcacacttatgcttcaaacaagaaaagacaa
tttgcaagtctaattctagactgatggggcatgtgcatgcatgtgatatg
atgaggacatgggagagagttgatagagcaagtcagagtagatgagagag
gcttccgctgttctccaaggcctgtgttcccagccatccttgtcttagga
tatagtgtggtccctgacaggcctgacttaaaacccacagaaaggtggac
ccagactttgtccaaaaatagcataatagagcagaaagaatggccacaac
attgctaatgataaagtacaaagaaagaaggtgtggttggtccttttaaa
agaagatagaaactcaatacacctttgaaagggttgaagagatgatctag
tatcaaatactagagatacaggaagaaagagaaaagcaatttgctaaagc
acaagattagaaatgaaaggttttgtggctttttggatcgtgtggccgaa
cactgctattaatgcaccagagaactgagatcttcacaaagggctatgag
cagcaactctacttctcacgtttgggctctgaactgtggtctgcttaaaa
agacatcacctcttcttctttgcatgactatcaagtagagatcgctgagg
gcaaaggtacagactttaagtatcattcttatcatcaatggtgcctacgg
gataaactgaacattccctgttcgtgccacacaggacctttcttcagaat
ggagatgctaattccatgcataagtgccttggccggctagaaagtgtctg
cttaagtaaatctctgaagaagtgaag
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gataattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccaaaagatgccccaactagtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagttggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcacattcacaaaggaacacacacaatatatac
tcactgataagtggatattagcccaaaacctaggatacccaagatataag
atacaatttcctaaacacatgaaactcaagaaaaatgaagactgaagtgt
ggacactatgcccctccttagaagtgggaacaaaacacccttggaaggag
ttacagagacaaagtttggagctgagatgaaaggatggaccatgtagaga
ctgccatatccagggatccaccccataatcagcatccaaacgctgacacc
attgcatacactagcaagattttatcgaaaggacccagatgtagctgtct
tttgtgagactaagttcggaactaaaacgaaaggatggactgtccagaga
ctaccccaacttggtatcctactcataataagcctcccaatgcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3473838_3475017
seq2: B6Ng01-029L23.b_47_1223 (reverse)

seq1  CTTCACTTC-TCATGGAATTTTACTTAAGCAGAACACTTTTCTAGCTGGC  49
      ||||||||| |||  ||  ||||||||||||| |||| |||||||| |||
seq2  CTTCACTTCTTCA--GAGATTTACTTAAGCAG-ACAC-TTTCTAGCCGGC  46

seq1  CAAGCCACTTATGCATGGAAATAGCATCTCCA-TCTGAGGATAGTTCCTT  98
      |||| ||||||||||||||| ||||||||||| ||||| || || ||| |
seq2  CAAGGCACTTATGCATGGAATTAGCATCTCCATTCTGAAGAAAGGTCC-T  95

seq1  GTGTTGGCACG-ACAGGGAATGTTCAGTTTATCCCGTAGGCA-CATTGAT  146
      ||| ||||||| |||||||||||||||||||||||||||||| |||||||
seq2  GTG-TGGCACGAACAGGGAATGTTCAGTTTATCCCGTAGGCACCATTGAT  144

seq1  GATAAGAATGATAACTTAAAGTCTGTACCTTTGCCCTCAGCGATCTCTAC  196
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATAAGAATGAT-ACTTAAAGTCTGTACCTTTGCCCTCAGCGATCTCTAC  193

seq1  TTGATAGTCATGCAAAGAAGAAGAGGTGATGTCTTTTTAAGCAGACCACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGTCATGCAAAGAAGAAGAGGTGATGTCTTTTTAAGCAGACCACA  243

seq1  GTTCAGAGCCCAAACGTGAGAAGTAGAGTTGCTGCTCATAGCCCTTTGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGCCCAAACGTGAGAAGTAGAGTTGCTGCTCATAGCCCTTTGTG  293

seq1  AAGATCTCAGTTCTCTGGTGCATTAATAGCAGTGTTCGGCCACACGATCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCAGTTCTCTGGTGCATTAATAGCAGTGTTCGGCCACACGATCC  343

seq1  AAAAAGCCACAAAACCTTTCATTTCTAATCTTGTGCTTTAGCAAATTGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCACAAAACCTTTCATTTCTAATCTTGTGCTTTAGCAAATTGCT  393

seq1  TTTCTCTTTCTTCCTGTATCTCTAGTATTTGATACTAGATCATCTCTTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCTTCCTGTATCTCTAGTATTTGATACTAGATCATCTCTTCA  443

seq1  ACCCTTTCAAAGGTGTATTGAGTTTCTATCTTCTTTTAAAAGGACCAACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCAAAGGTGTATTGAGTTTCTATCTTCTTTTAAAAGGACCAACC  493

seq1  ACACCTTCTTTCTTTGTACTTTATCATTAGCAATGTTGTGGCCATTCTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCTTTCTTTGTACTTTATCATTAGCAATGTTGTGGCCATTCTTT  543

seq1  CTGCTCTATTATGCTATTTTTGGACAAAGTCTGGGTCCACCTTTCTGTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTATTATGCTATTTTTGGACAAAGTCTGGGTCCACCTTTCTGTGG  593

seq1  GTTTTAAGTCAGGCCTGTCAGGGACCACACTATATCCTAAGACAAGGATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAGTCAGGCCTGTCAGGGACCACACTATATCCTAAGACAAGGATG  643

seq1  GCTGGGAACACAGGCCTTGGAGAACAGCGGAAGCCTCTCTCATCTACTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAACACAGGCCTTGGAGAACAGCGGAAGCCTCTCTCATCTACTCT  693

seq1  GACTTGCTCTATCAACTCTCTCCCATGTCCTCATCATATCACATGCATGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTCTATCAACTCTCTCCCATGTCCTCATCATATCACATGCATGC  743

seq1  ACATGCCCCATCAGTCTAGAATTAGACTTGCAAATTGTCTTTTCTTGTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCCCATCAGTCTAGAATTAGACTTGCAAATTGTCTTTTCTTGTTT  793

seq1  GAAGCATAAGTGTGATGTTACACGTTTAAGTATTATTCCTTTCCCTCTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATAAGTGTGATGTTACACGTTTAAGTATTATTCCTTTCCCTCTCT  843

seq1  GTATCAGGCATCCCCTGATGAATTAAGAAACACTTAACAGGGTGATAGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGCATCCCCTGATGAATTAAGAAACACTTAACAGGGTGATAGGT  893

seq1  AGCTAATGGTCCTACTAATGGTCAAAGTTCATATGGAGACTACTTTTTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATGGTCCTACTAATGGTCAAAGTTCATATGGAGACTACTTTTTCT  943

seq1  TTGGGCAATGGGATTAAAATGACCAGCAGAAATGAGACTGCACAATCTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAATGGGATTAAAATGACCAGCAGAAATGAGACTGCACAATCTGA  993

seq1  TCCATTTGGTAGGCCTGGAATCTTATCTGTTTGCTGAAATATTCTCTGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGGTAGGCCTGGAATCTTATCTGTTTGCTGAAATATTCTCTGCT  1043

seq1  TGTTTGGATTTTAGGTAGATGAAAGCTGACAATAGAATATAGAAGCAGAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGATTTTAGGTAGATGAAAGCTGACAATAGAATATAGAAGCAGAT  1093

seq1  GTTGTACAGTGATTGTGAACAGAATGGTCAAATGAAATGCATCAAAGTCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACAGTGATTGTGAACAGAATGGTCAAATGAAATGCATCAAAGTCA  1143

seq1  TAATGGAAGACAATGCAGATAGCCTGTGGAATTC  1180
      ||||||||||||||||||||||||||||||||||
seq2  TAATGGAAGACAATGCAGATAGCCTGTGGAATTC  1177

seq1: chr10_104053903_104054363
seq2: B6Ng01-029L23.g_67_537 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||||||||||||||||||||| || |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAACTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||  ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACTAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTTTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||| ||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTATCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471