BAC Information

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BAC

Clone NameB6Ng01-029M16
Chromosome10 (Build37)7 (Build37)
Map Location 104,053,903 - 104,054,363142,002,109 - 142,003,072
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029M16.bB6Ng01-029M16.g
ACCDH859888DH859889
length977959
definitionDH859888|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M16, 5' end.DH859889|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(142,002,109 - 142,003,072)
sequence
gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagggaaatgcaaattaaaacaaccctgagat
tccatctcataccagtcagaatggctaagatcaaaaactcagctgacagc
agatgctgttgagaatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtaaccactctggaaatcagtctgggggtttctcata
aaattggacatggtactactggaggatcctgcaatacctctcctgggcat
atatccagaagatgttccaactagtaagaaagaaacatgctccactatgt
tcatagcagccttatttataatagccagaagctggaaagaacccagatgc
cccacaacagaggaatggatacaaaaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggttggacctggagggcattatcctgagtgaggtaacccaatcacaaaa
gaactcaaatgatatgtacccactgataagtggatattagcccagaaact
tagaatatccaatatataatttacaattttcaaaacacatgaaacttaag
aagaatgaagaccaaattgtggacacttttgtggggagccgccctcacat
tcgccgttacaagatggcgctgacatcctgtgttctaagtggtaaacaaa
taatctgcgcatgtgccaagggtagttctccactccatgtgctctgcctt
ccccgtgacgacaacacggccaatgggctgcagccaatcagggagcgaca
cgtcctaggcggaggataattctccttaaaagggacggggtttcgccatt
ctctctcttgctcctgaagatgtaagcaataaagcttttgccgcagaaga
tccagtttgttgcgtctttcctggccg
gaattcagcccagggcttcctgcttagtagattcactacaaaggttctta
cagtctctataggaccacaaagcataatcaaggtcagtctggagccccct
ggccaggtgcacgtcttcctttgtcctgtctgtgttacatgcaggagact
gctgcaacagccagctttacagatgtgcagtagtaacaagatcctgccca
cccactctccttcagcatgcctgcttttgcatggttctccttccagcctg
agagagaaaattgttacaaggatgatacctaacatttgtgttttcttgct
ttgttgttaaaagccagctacctgtcctggtgaacgtagccataattata
gctgtaatcactctgtgccggtttgggggcatgtgcctgagcagacatgc
cttcatttgctcaatccagtgatttctcatcaaaataactttgttactgt
tgaatgtaagggctttgcttttacactcttaaccctacagtgagtggttt
cattagtacagagtgggagagagtcatcttttcctttaacctgtgagtga
tttctgtgttgatcaccatgaccctctttgtgttagaggcaagaatttga
gttgaagtctggccaatttaaccattccacctactctgtcttttgtttgg
gcttaaggggaaatagtctcctttggtgctagagtttctgttcaggagcc
catgatttcctactcgttccatcttggtcttcaggactctccggtgttct
tcccacacatgtttcctctggcttgcatcctgtttcctgccaacaatgcc
atttagctcccttgttcatcctccatcacggtcaggattccttcagtatc
tccaagtagcgtcgtcctgatgggcaagcttccttatgcctagcaacatc
atttatttgttcagctatttgaaatgtttattttgggggtggggaagcat
gtaagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-029M16.b_50_519 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACA-TTTTCTGT  39
      ||||||||          ||||||||||||||||||||||| |||| |||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTTTTGT  50

seq1  ATCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTAT  89
      ||| |||||||||||| |||||||||||||||||||||||| ||||||||
seq2  ATCCATTCCTCTGTTGTGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTAT  100

seq1  TATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGG  139
      ||||||||||||||||||||| |||||||||||||| || |||||||  |
seq2  TATAAATAAGGCTGCTATGAACATAGTGGAGCATGTTTCTTTCTTACTAG  150

seq1  TTGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCC  189
      ||||  |||||||||||||||||||||| ||||||||||| |||||||||
seq2  TTGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTGCAGGATCCTCC  200

seq1  GGTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAG  239
       ||||||| |||||||||||| |||  |||| |||||| |||||||||||
seq2  AGTAGTACCATGTCCAATTTTATGAGAAACCCCCAGACTGATTTCCAGAG  250

seq1  TGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTT  289
      ||||  ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGT--TACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTT  298

seq1  CTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCC  339
      |||||||| |||  ||||||||||||||| |||| |||||||||||||||
seq2  CTCCACATTCTCAACAGCATCTGCTGTCAGCTGAGTTTTTGATCTTAGCC  348

seq1  ATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTC  389
      |||||||||||| |||| |||||||||||||||||||| |||||||||||
seq2  ATTCTGACTGGTATGAGATGGAATCTCAGGGTTGTTTTAATTTGCATTTC  398

seq1  CCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTC  439
      ||||||||||||||||| ||| |||||||||||||||||||| |||||| 
seq2  CCTGATGATTAAGGATGCTGAGCATTTTTTCAGGTGCTTCTCAGCCATTT  448

seq1  GGTATTCCTCAGGTGAGAATTC  461
      ||||||||||||||||||||||
seq2  GGTATTCCTCAGGTGAGAATTC  470

seq1: chr7_142002109_142003072
seq2: B6Ng01-029M16.g_68_1026

seq1  GAATTCAGCCCAGGGCTTCCTGCTTAGTAGATTCACTACAAAGGTTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCAGGGCTTCCTGCTTAGTAGATTCACTACAAAGGTTCTTA  50

seq1  CAGTCTCTATAGGACCACAAAGCATAATCAAGGTCAGTCTGGAGCCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTATAGGACCACAAAGCATAATCAAGGTCAGTCTGGAGCCCCCT  100

seq1  GGCCAGGTGCACGTCTTCCTTTGTCCTGTCTGTGTTACATGCAGGAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTGCACGTCTTCCTTTGTCCTGTCTGTGTTACATGCAGGAGACT  150

seq1  GCTGCAACAGCCAGCTTTACAGATGTGCAGTAGTAACAAGATCCTGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAACAGCCAGCTTTACAGATGTGCAGTAGTAACAAGATCCTGCCCA  200

seq1  CCCACTCTCCTTCAGCATGCCTGCTTTTGCATGGTTCTCCTTCCAGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTCCTTCAGCATGCCTGCTTTTGCATGGTTCTCCTTCCAGCCTG  250

seq1  AGAGAGAAAATTGTTACAAGGATGATACCTAACATTTGTGTTTTCTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAATTGTTACAAGGATGATACCTAACATTTGTGTTTTCTTGCT  300

seq1  TTGTTGTTAAAAGCCAGCTACCTGTCCTGGTGAACGTAGCCATAATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTAAAAGCCAGCTACCTGTCCTGGTGAACGTAGCCATAATTATA  350

seq1  GCTGTAATCACTCTGTGCCGGTTTGGGGGCATGTGCCTGAGCAGACATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAATCACTCTGTGCCGGTTTGGGGGCATGTGCCTGAGCAGACATGC  400

seq1  CTTCATTTGCTCAATCCAGTGATTTCTCATCAAAATAACTTTGTTACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTGCTCAATCCAGTGATTTCTCATCAAAATAACTTTGTTACTGT  450

seq1  TGAATGTAAGGGCTTTGCTTTTACACTCTTAACCCTACAGTGAGTGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTAAGGGCTTTGCTTTTACACTCTTAACCCTACAGTGAGTGGTTT  500

seq1  CATTAGTACAGAGTGGGAGAGAGTCATCTTTTCCTTTAACCTGTGAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTACAGAGTGGGAGAGAGTCATCTTTTCCTTTAACCTGTGAGTGA  550

seq1  TTTCTGTGTTGATCACCATGACCCTCTTTGTGTTAGAGGCAAGAATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTTGATCACCATGACCCTCTTTGTGTTAGAGGCAAGAATTTGA  600

seq1  GTTGAAGTCTGGCCAATTTAACCATTCCACCTACTCTGTCTTTTGTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGTCTGGCCAATTTAACCATTCCACCTACTCTGTCTTTTGTTTGG  650

seq1  GCTTAAGGGGAAATAGTCTCCTTTGGTGCTAGAGTTTCTGTTCAGGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGGGGAAATAGTCTCCTTTGGTGCTAGAGTTTCTGTTCAGGAGCC  700

seq1  CATGATTTCCTACTCGTTCCATCTTGGTCTTCAGGACTCTCCGGTGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTCCTACTCGTTCCATCTTGGTCTTCAGGACTCTCCGGTGTTCT  750

seq1  TCCCACACATGTTTCCTCTGGCTTGCATCCTGTTTCCTGCCAACAATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACATGTTTCCTCTGGCTTGCATCCTGTTTCCTGCCAACAATGCC  800

seq1  ATTTAGCTCCCTTGTTCATCCTCCATCACGGTCAGGATTCCTTCAGTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTCCCTTGTTCATCCTCCATCACGGTCAGGATTCCTTCAGTATC  850

seq1  TCCAAGTAGCGTCGGTCCTGATGGGCAAGCTTCCTTATGCCTAGCAACAA  900
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  TCCAAGTAGCGTC-GTCCTGATGGGCAAGCTTCCTTATGCCTAGCAAC-A  898

seq1  TCATTTATTTGTTCAGCTATTTGAAATGTTTATTTTGGGGGGTGGGGGAA  950
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  TCATTTATTTGTTCAGCTATTTGAAATGTTTATTTTGGGGG--TGGGGAA  946

seq1  GCATGTAAAGAGGA  964
      |||||| |||||||
seq2  GCATGT-AAGAGGA  959