BAC Information

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BAC

Clone NameB6Ng01-030P07
Chromosome19 (Build37)10 (Build37)
Map Location 20,256,343 - 20,257,452104,053,596 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042218
Downstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030P07.bB6Ng01-030P07.g
ACCDH860706DH860707
length1,089951
definitionDH860706|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P07, 5' end.DH860707|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,256,343 - 20,257,452)(104,053,596 - 104,054,363)
sequence
gaattccatagcttgacagcaaagttgaataccttcgaactcatacccat
tggggtaaatataaattttcagtcaacgaccagtttccaccaattgagag
gcactgcatagtgagcttcccgagattttcttgaattcagtgagaactga
ttaacccatttagatggagctaaacctatctttacatggagctaattatg
tactaatgcatacattcagtaatgccatgaggctgtccatctgcaaactg
ccagaaataagctgcccaaattcagagaagaacttattttaagactgaaa
aatgacacggatttaaagcttgcttttgctgatttgataaactgtaagtt
gaaacaattacattaatgtagcccatcttaaagccaatggtttttttttt
tttttctgaaaagaaagtgaaggaaaaagtaattgcttttaacttcacat
gtgagcacaataaagatgattttatatgctatttcctcagactgccttag
aattgctaccttagaaaatcgtgagtggcaaaggaagtagccgctagcct
catctcactaagtggatgcttccagaatgatctttaaggatgagaggaac
taagggttgggaagggaaattgtgttacttttaaatggttttctgaggtg
attgttttatctactgttggtaaaaatatcaacgggtatggatcaaaaat
ttgaggggcaattgatccactcgagtgatttaaatagacagaagagctat
accgaagcaaaataccgaactatccttgaggagtccaggacacgagaaaa
gggctaccataaagcatgatgcaaaataattagagaatcccgtgcctttt
ccaagaaaattctgtggcaaaaggtcttgcccaaacagtcaaaggactga
ggaagatcagtagccagagccaaacccacctttctgaggacagaacagat
cactcattttctgcctctattacatctcttggacagatctcttatttttc
ctagtgtttctaataggattagagtttttgtcttgaactataaggagtct
ctgatactacccactactagatagtactcacatatccta
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatgacaacaaccctgagat
tccatctcacaccagtcagaatggctaagacaaaaaattcaggtgacagc
agatgctggctaggatgtggagaaagaggaacactcctccattgttggtg
ggtttgcaagcttgtacaaccactctggaaatcagtctggcagttcctta
gaaaattggacatagtactaccagaggatccagcaatacctcttctgggc
atatatccagaagatgtcctaaccggtatgaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaata
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaagtgacccaatcacaaa
agaactcacatgatatgtactcactgataagtggatattagcccagaaac
ttagaatacccaagatataagatacaatttgcgaaacacatgaagcttgg
gaagaatgaagaccaaagtgtggacactttgtccccttcttagaattggg
aacaaaacacccatggaaggagttacagagacaaagtttggagctgagat
gaaaggatggaccatctagagactgccttgtttcatttcttaaaaataaa
aagaaaagaaaagaaaaaaaaaccttcctgtgatttaggcactgtataag
aagctttgttggctcatactacacaatgctgatacacgcctaatttaaat
tggttgtattggaaacagagatattttgtttagacatttatgtatataca
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20256343_20257452
seq2: B6Ng01-030P07.b_45_1133

seq1  GAATTCCATAGCTTGACAGCAAAGTTGAATACCTTCGAACTCATACCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGCTTGACAGCAAAGTTGAATACCTTCGAACTCATACCCAT  50

seq1  TGGGGTAAATATAAATTTTCAGTCAACGACCAGTTTCCACCAATTGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTAAATATAAATTTTCAGTCAACGACCAGTTTCCACCAATTGAGAG  100

seq1  GCACTGCATAGTGAGCTTCCCGAGATTTTCTTGAATTCAGTGAGAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCATAGTGAGCTTCCCGAGATTTTCTTGAATTCAGTGAGAACTGA  150

seq1  TTAACCCATTTAGATGGAGCTAAACCTATCTTTACATGGAGCTAATTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCATTTAGATGGAGCTAAACCTATCTTTACATGGAGCTAATTATG  200

seq1  TACTAATGCATACATTCAGTAATGCCATGAGGCTGTCCATCTGCAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATGCATACATTCAGTAATGCCATGAGGCTGTCCATCTGCAAACTG  250

seq1  CCAGAAATAAGCTGCCCAAATTCAGAGAAGAACTTATTTTAAGACTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATAAGCTGCCCAAATTCAGAGAAGAACTTATTTTAAGACTGAAA  300

seq1  AATGACACGGATTTAAAGCTTGCTTTTGCTGATTTGATAAACTGTAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACGGATTTAAAGCTTGCTTTTGCTGATTTGATAAACTGTAAGTT  350

seq1  GAAACAATTACATTAATGTAGCCCATCTTAAAGCCAATGGTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATTACATTAATGTAGCCCATCTTAAAGCCAATGGTTTTTTTTTT  400

seq1  TTTTTCTGAAAAGAAAGTGAAGGAAAAAGTAATTGCTTTTAACTTCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAAAAGAAAGTGAAGGAAAAAGTAATTGCTTTTAACTTCACAT  450

seq1  GTGAGCACAATAAAGATGATTTTATATGCTATTTCCTCAGACTGCCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACAATAAAGATGATTTTATATGCTATTTCCTCAGACTGCCTTAG  500

seq1  AATTGCTACCTTAGAAAATCGTGAGTGGCAAAGGAAGTAGCCGCTAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTACCTTAGAAAATCGTGAGTGGCAAAGGAAGTAGCCGCTAGCCT  550

seq1  CATCTCACTAAGTGGATGCTTCCAGAATGATCTTTAAGGATGAGAGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACTAAGTGGATGCTTCCAGAATGATCTTTAAGGATGAGAGGAAC  600

seq1  TAAGGGTTGGGAAGGGAAATTGTGTTACTTTTAAATGGTTTTCTGAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTTGGGAAGGGAAATTGTGTTACTTTTAAATGGTTTTCTGAGGTG  650

seq1  ATTGTTTTATCTACTGTTGGTAAAAATATCAACGGGTATGGATCAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTATCTACTGTTGGTAAAAATATCAACGGGTATGGATCAAAAAT  700

seq1  TTGAGGGGCAATTGATCCACTCGAGTGATTTAAATAGACAGAAGAGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGGCAATTGATCCACTCGAGTGATTTAAATAGACAGAAGAGCTAT  750

seq1  ACCGAAGCAAAATACCGAACTATCCTTGAGGAGTCCAGGACACGAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAGCAAAATACCGAACTATCCTTGAGGAGTCCAGGACACGAGAAAA  800

seq1  GGGCTACCATAAAGCATGATGCAAAATAATTAGAGAATCCCGTGCCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACCATAAAGCATGATGCAAAATAATTAGAGAATCCCGTGCCTTTT  850

seq1  CCAAGAAAATTCTGTGGCAAAAGGTCTTGCCCAAACAGTCAAAGGACTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAAATTCTGTGGCAAAAGGTCTTGCCCAAACAGTCAAAGGACTGA  900

seq1  GGAAGATCAGTAGCCAGAGCCAAACCCACCTTTCTGAGGAACCAGAACAG  950
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  GGAAGATCAGTAGCCAGAGCCAAACCCACCTTTCTGAGGA--CAGAACAG  948

seq1  ATCAACTCATTTTCTGCCCTCTATTACATCCTCTTGGACCAGATCTCTTA  1000
      ||| |||||||||||| |||||||||||| |||||||| |||||||||||
seq2  ATC-ACTCATTTTCTG-CCTCTATTACAT-CTCTTGGA-CAGATCTCTTA  994

seq1  TTTTTTCCTAGTGTTTCTAAATTAGGGAATTAGAGTTTTTGTCTTGAACT  1050
       |||||||||||||||||||  ||||  ||||||||||||||||||||||
seq2  -TTTTTCCTAGTGTTTCTAA--TAGG--ATTAGAGTTTTTGTCTTGAACT  1039

seq1  AATTAAAGGAGTCTCTGATACTACCACACTTACTAAGAATTAAGTACATC  1100
      |    |||||||||||||||||||| ||| |||| |||    ||||| ||
seq2  A---TAAGGAGTCTCTGATACTACC-CAC-TACT-AGA---TAGTAC-TC  1079

seq1  ACATATCCTA  1110
      ||||||||||
seq2  ACATATCCTA  1089

seq1: chr10_104053596_104054363
seq2: B6Ng01-030P07.g_66_621 (reverse)

seq1  AGTTCCTTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCC  50
      ||||| ||||||||||||| ||  ||||||||||||| | ||||||||||
seq2  AGTTCTTTTGTGATTGGGTCACTTCACTCAGGATGATGCCCTCCAGGTCC  50

seq1  ATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||      
seq2  ATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGC------  94

seq1  TACATTTAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAA  150
                                                        
seq2  --------------------------------------------------  94

seq1  TAATTTAATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAA  200
                                                        
seq2  --------------------------------------------------  94

seq1  TTAAATTAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAA  250
                                                        
seq2  --------------------------------------------------  94

seq1  TAATTTTATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTA  300
              | ||||                             |||    
seq2  --------TGAGTA-----------------------------GTA----  103

seq1  CATTACATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCT  350
                     ||| |||||||||||||||||||||||||||||| 
seq2  ---------------CTCTATTGTGTAAATGTACCACATTTTCTGTATCC  138

seq1  ATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATA  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATA  188

seq1  AATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGG  450
      ||||||||||||||||| ||||||||||||||||||||| |||||||| |
seq2  AATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCATACCGGTTAG  238

seq1  GGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTA  500
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCTGGTA  288

seq1  GTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGT  550
      ||||||||||||||||||| | |||| ||||||| |||||||||||||||
seq2  GTACTATGTCCAATTTTCTAAGGAACTGCCAGACTGATTTCCAGAGTGGT  338

seq1  TGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCC  600
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  TGTACAAGCTTGCAAACCCACCAACAATGGAGGAGTGTTCCTCTTTCTCC  388

seq1  ACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTC  650
      ||||||| ||||||||||||||||||||||||||||  ||||||||||||
seq2  ACATCCTAGCCAGCATCTGCTGTCACCTGAATTTTTTGTCTTAGCCATTC  438

seq1  TGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTG  700
      ||||||||||||| |||||||||||||||||| | |||||||||||||||
seq2  TGACTGGTGTGAGATGGAATCTCAGGGTTGTTGTCATTTGCATTTCCCTG  488

seq1  ATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTA  750
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  ATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAGCCATTCGGTA  538

seq1  TTCCTCAGGTGAGAATTC  768
      ||||||||||||||||||
seq2  TTCCTCAGGTGAGAATTC  556