BAC Information

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BAC

Clone NameB6Ng01-033H08
Chromosome10 (Build37)
Map Location 106,131,885 - 106,214,024
singlet/doubletdoublet
Overlap genePpfia2
Upstream geneBC067068, Ccdc59, EG667758, EG639162, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq, EG628870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033H08.bB6Ng01-033H08.g
ACCDH862501DH862502
length1,045761
definitionDH862501|Mus musculus domesticus DNA, BAC clone: B6Ng01-033H08, 5' end.DH862502|Mus musculus domesticus DNA, BAC clone: B6Ng01-033H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,131,885 - 106,132,939)(106,213,264 - 106,214,024)
sequence
gaattccaataaacttcccaaatatcacctcccgccttatgttagggagt
ggtgtcccatggtataaattgggaaaggggagggcacacaaactttggat
ctattacaaatattactaatcatataggatgtccattgatcaagtactag
aaaaataatgaaacagaatagtaggaacacaggagagatgtctcagggga
gacagcaccatttaaataccaactctaggcaagagggtagaaatacaagg
atatcagttttgggttaattacaggggtggccattgtggaagatgtcaag
atgaacttagttgaaatcttaagaaacatagaacgtggaagaaaatataa
atggtaacttttcaaagaattttattctaaagagaggcaaaaacaggctg
gaagcaattagaggattataagataatagaaatatttctttcttcttctc
ctcctttttcccttcctcctcagcctccttgtaccatccctcttcttctt
tcatttgatttgcaaatcctttattgagttttcatatttaatttttattc
acttttcatcctgcttacagcccccatccatcctctcttcccagtctcac
cattacaaactaactcctcttcccattgtcccctccccttctcctcagag
aagggtacaccactgggttcaacctgaccttggctcatccattcccagca
gtactaagcatgtattctcccaatggggcccaacgaggcagttcactcac
ataggtggaaggggattcaatgacagggaacagagaaagaccccactcaa
attgttaagggagccataggaagatcaagctgtacatttgctacaatgtg
taaggtatctaggttcaacttctgcatgctccctggttggtggcccaggc
tctgtgagcccccatggtcccaggctatcactctttgggtctttcttctg
ttatgctggagctctttttcttatacagttctagtgatgcattgcaaata
gctttagacatgtagtagttagaacatcttgcttacttacagagc
gaattcaattgaactgcactcacctgacctcagtgaaacccattgcattg
actgaacctcactgaactacactcaatgaactgccatcctcctgactcac
tctgccctcctcttaagtagcccctcttttactgactgtaattttttgac
atattaaagttagttacctccacttgtgcctcacaaagacatttcttatt
tacttttcatttgctctaaaacatttacaagtcttaaaacacacacttta
gagatcaccactcaggcaaacagggaagtgattaaaaccattgcaaatat
ttttccccttccatgttaacatgttcagtaatactgccattgttcccatc
tccttggtgcatccatttctaggagggactttatagcagacgtcctggca
atatgactcttggcattctttcctcctttcctgagatgtcccctgagtca
cagatgctggggctgttgtagatgtctccattgaatctgggtgcctcacc
atgttgatctctgccttgtgtccagctgtggttttctgtgatggttcctg
attactgtaaaggaaagcttctttggtaggggtgtaagtaatgcttatct
ttggaattaggataagatttagaatttggtaaggcattatgctggtctag
tcagaattctttctgttaaatgatttgaaattgctacagtagcaaatatt
cattgagtatcttctatgtgtcacaaacattggctcatggggtgtagggg
taggaagagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106131885_106132939
seq2: B6Ng01-033H08.b_46_1090

seq1  GAATTCCAATAAACTTCCCAAATATCACCTCCCGCCTTATGTTAGGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAAACTTCCCAAATATCACCTCCCGCCTTATGTTAGGGAGT  50

seq1  GGTGTCCCATGGTATAAATTGGGAAAGGGGAGGGCACACAAACTTTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCCATGGTATAAATTGGGAAAGGGGAGGGCACACAAACTTTGGAT  100

seq1  CTATTACAAATATTACTAATCATATAGGATGTCCATTGATCAAGTACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACAAATATTACTAATCATATAGGATGTCCATTGATCAAGTACTAG  150

seq1  AAAAATAATGAAACAGAATAGTAGGAACACAGGAGAGATGTCTCAGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATGAAACAGAATAGTAGGAACACAGGAGAGATGTCTCAGGGGA  200

seq1  GACAGCACCATTTAAATACCAACTCTAGGCAAGAGGGTAGAAATACAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCACCATTTAAATACCAACTCTAGGCAAGAGGGTAGAAATACAAGG  250

seq1  ATATCAGTTTTGGGTTAATTACAGGGGTGGCCATTGTGGAAGATGTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTTTTGGGTTAATTACAGGGGTGGCCATTGTGGAAGATGTCAAG  300

seq1  ATGAACTTAGTTGAAATCTTAAGAAACATAGAACGTGGAAGAAAATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTAGTTGAAATCTTAAGAAACATAGAACGTGGAAGAAAATATAA  350

seq1  ATGGTAACTTTTCAAAGAATTTTATTCTAAAGAGAGGCAAAAACAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAACTTTTCAAAGAATTTTATTCTAAAGAGAGGCAAAAACAGGCTG  400

seq1  GAAGCAATTAGAGGATTATAAGATAATAGAAATATTTCTTTCTTCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATTAGAGGATTATAAGATAATAGAAATATTTCTTTCTTCTTCTC  450

seq1  CTCCTTTTTCCCTTCCTCCTCAGCCTCCTTGTACCATCCCTCTTCTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTTCCCTTCCTCCTCAGCCTCCTTGTACCATCCCTCTTCTTCTT  500

seq1  TCATTTGATTTGCAAATCCTTTATTGAGTTTTCATATTTAATTTTTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGATTTGCAAATCCTTTATTGAGTTTTCATATTTAATTTTTATTC  550

seq1  ACTTTTCATCCTGCTTACAGCCCCCATCCATCCTCTCTTCCCAGTCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCATCCTGCTTACAGCCCCCATCCATCCTCTCTTCCCAGTCTCAC  600

seq1  CATTACAAACTAACTCCTCTTCCCATTGTCCCCTCCCCTTCTCCTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAACTAACTCCTCTTCCCATTGTCCCCTCCCCTTCTCCTCAGAG  650

seq1  AAGGGTACACCACTGGGTTCAACCTGACCTTGGCTCATCCATTCCCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTACACCACTGGGTTCAACCTGACCTTGGCTCATCCATTCCCAGCA  700

seq1  GTACTAAGCATGTATTCTCCCAATGGGGCCCAACGAGGCAGTTCACTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAGCATGTATTCTCCCAATGGGGCCCAACGAGGCAGTTCACTCAC  750

seq1  ATAGGTGGAAGGGGATTCAATGACAGGGAACAGAGAAAGACCCCACTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGGAAGGGGATTCAATGACAGGGAACAGAGAAAGACCCCACTCAA  800

seq1  ATTGTTAAGGGAGCCATAGGAAGATCAAGCTGTACATTTGCTACAAATGT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTGTTAAGGGAGCCATAGGAAGATCAAGCTGTACATTTGCTAC-AATGT  849

seq1  GTAAGGTATCTAGGTTCAACTTCTGCATGCTCCCTGGTTGGTGGCCCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTATCTAGGTTCAACTTCTGCATGCTCCCTGGTTGGTGGCCCAGG  899

seq1  CTCTGTGAGCCCCCATGGTCCCAGGCTAATCAACTCTTTGGGTC-TTCTT  949
      ||||||||||||||||||||||||||| ||| |||||||||||| |||||
seq2  CTCTGTGAGCCCCCATGGTCCCAGGCT-ATC-ACTCTTTGGGTCTTTCTT  947

seq1  CTGTTATGCTTGAGCTCTTTTTTCTTTATAACAGGTTCTAGTGATGCATT  999
      |||||||||| |||||||||||   |||| ||| ||||||||||||||||
seq2  CTGTTATGCTGGAGCTCTTTTT--CTTAT-ACA-GTTCTAGTGATGCATT  993

seq1  GCAAATAAAGCTTTAGACATGGTAGTAGTTAGAACATCCTGCTACATTAA  1049
      ||||||  |||||||||||| ||||||||||||||||| ||||  | | |
seq2  GCAAAT--AGCTTTAGACAT-GTAGTAGTTAGAACATCTTGCT-TACTTA  1039

seq1  CAGAGC  1055
      ||||||
seq2  CAGAGC  1045

seq1: chr10_106213264_106214024
seq2: B6Ng01-033H08.g_69_829 (reverse)

seq1  ATCTCTTCCTACCCCTACACCCCATGAGCCAATGTTTGTGACACATAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCCTACCCCTACACCCCATGAGCCAATGTTTGTGACACATAGAA  50

seq1  GATACTCAATGAATATTTGCTACTGTAGCAATTTCAAATCATTTAACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCAATGAATATTTGCTACTGTAGCAATTTCAAATCATTTAACAGA  100

seq1  AAGAATTCTGACTAGACCAGCATAATGCCTTACCAAATTCTAAATCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCTGACTAGACCAGCATAATGCCTTACCAAATTCTAAATCTTAT  150

seq1  CCTAATTCCAAAGATAAGCATTACTTACACCCCTACCAAAGAAGCTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTCCAAAGATAAGCATTACTTACACCCCTACCAAAGAAGCTTTCC  200

seq1  TTTACAGTAATCAGGAACCATCACAGAAAACCACAGCTGGACACAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTAATCAGGAACCATCACAGAAAACCACAGCTGGACACAAGGCA  250

seq1  GAGATCAACATGGTGAGGCACCCAGATTCAATGGAGACATCTACAACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAACATGGTGAGGCACCCAGATTCAATGGAGACATCTACAACAGC  300

seq1  CCCAGCATCTGTGACTCAGGGGACATCTCAGGAAAGGAGGAAAGAATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATCTGTGACTCAGGGGACATCTCAGGAAAGGAGGAAAGAATGCC  350

seq1  AAGAGTCATATTGCCAGGACGTCTGCTATAAAGTCCCTCCTAGAAATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCATATTGCCAGGACGTCTGCTATAAAGTCCCTCCTAGAAATGGA  400

seq1  TGCACCAAGGAGATGGGAACAATGGCAGTATTACTGAACATGTTAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAAGGAGATGGGAACAATGGCAGTATTACTGAACATGTTAACATG  450

seq1  GAAGGGGAAAAATATTTGCAATGGTTTTAATCACTTCCCTGTTTGCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGAAAAATATTTGCAATGGTTTTAATCACTTCCCTGTTTGCCTGA  500

seq1  GTGGTGATCTCTAAAGTGTGTGTTTTAAGACTTGTAAATGTTTTAGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATCTCTAAAGTGTGTGTTTTAAGACTTGTAAATGTTTTAGAGCA  550

seq1  AATGAAAAGTAAATAAGAAATGTCTTTGTGAGGCACAAGTGGAGGTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAGTAAATAAGAAATGTCTTTGTGAGGCACAAGTGGAGGTAACT  600

seq1  AACTTTAATATGTCAAAAAATTACAGTCAGTAAAAGAGGGGCTACTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAATATGTCAAAAAATTACAGTCAGTAAAAGAGGGGCTACTTAAG  650

seq1  AGGAGGGCAGAGTGAGTCAGGAGGATGGCAGTTCATTGAGTGTAGTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCAGAGTGAGTCAGGAGGATGGCAGTTCATTGAGTGTAGTTCAG  700

seq1  TGAGGTTCAGTCAATGCAATGGGTTTCACTGAGGTCAGGTGAGTGCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCAGTCAATGCAATGGGTTTCACTGAGGTCAGGTGAGTGCAGTT  750

seq1  CAATTGAATTC  761
      |||||||||||
seq2  CAATTGAATTC  761