BAC Information

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BAC

Clone NameB6Ng01-033J01
Chromosome10 (Build37)
Map Location 120,826,213 - 120,956,745
singlet/doubletdoublet
Overlap geneGns, Rassf3, LOC100043500
Upstream geneHmga2, LOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498
Downstream geneTbk1, Xpot, D930020B18Rik, BC048403, Srgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033J01.bB6Ng01-033J01.g
ACCDH862578DH862579
length8231,008
definitionDH862578|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J01, 5' end.DH862579|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,956,031 - 120,956,745)(120,826,213 - 120,827,227)
sequence
gaattccaggctggtgagagacctggactccgaaataaataaataaatat
taattttcctgaggaacaataccagaggtggatttttgacttactgaaca
cacacacacacacacacacacacatacacacatacacacacacaccccta
cctgcatacacacagatacacttaataacaaaaaactctaacatatttag
ttattccctaaacttagatttttgttttgtttaaaaaaagatgtatttat
ttgtattatgagggctctatttgcatgtgtgcctgcatgacagaagagga
cattacctccctttatagatggtcttaagccaccaggtggtggctggtat
ttgaactcaggacctctagaagagcagccagtgttcctaacagctaagca
gtctctccagtcctgaacttaaattttaataaaacctgacattcactttc
tacatttatagctgtgaagattaggaagctcaaatctggctgacttttgt
actgcacaaattttcttattatgaatgtaatagacaattattacagagaa
tttggaacatgtaacaaagtttgaggggaaaaaaacgtttaaacttcctg
tcatcccccaagtggagacacttgctctgaattcctgagtaccttcaatt
cctgtcgtttgtgactgtgcactgtttacagttatttcttggtaaaacta
gaattgtacagacagaaaggcatagcttcgtctccgctcatcccattgtg
aaagcatggcttccttgttctaacactgcatcttagacttgattgaactc
ttcctggtttcattgttgtttct
gaattcccttcatcctgtgtaaactgtcggtttagttagtacaagctggc
ccagtgagtgaagagcagtatttggtctccattttgcatttacttgttag
taaggtgaggctctcttctgtcagcttccttcgtgtgccacacagtgcga
gagcagacaattccatgtggtgcatgagagcagacagttcggtcgtttct
ggtgttgggccatcacaacctaattccagagcatcccgccatcccagatc
attggtcacccctccgccatctcttccccgccctcaggcagcctataacc
ctttacctctgtggagtcatctaccctggacgccaagtgtatgtgcagaa
cagaaatgcacagggtagggcttcccctgtcttgacattcaaggccttgt
ataagctcgctcccattccccactacatgtcctcagcttgacaccacaga
ggcctgtgggcttgctaagacctgtgattcagagctgatgtagcagcaca
ctgagagagccagcctgggagtggtgctgctcagcttcctgtgcaccagt
gtgcgtgtgaaaccccgcatcagccactagcaccagaaagacaaccctag
gacacgagacggctggtgtcacgtgtgcggcacccagctgccaaggaaga
tgttagactgacagaagggtcccttctagtctgcctgccttcggccttcc
tctgtccttggctgatgtctgaagcggcctttgccccctctcactcaaga
ccaccctctctctgcccacctcctgcctgttgtcctgccttgtgcctcag
cctcccgagcagctggtgctgcagatgtccctggcccggcttgcctgctg
cttgtggcctgctgagggtttaggccctggctctcccccccagtctgttc
tggttcctcctcttaaatgctgtggtcaaaacccacccaggcttttaaac
ctacttgctccgtcctagaggcaaaatgtatgtcccggttctagatttgt
ttcagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_120956031_120956745
seq2: B6Ng01-033J01.b_50_764 (reverse)

seq1  CTGTCTGTACAATTCTAGTTTTACCAAGAAATAACTGTAAACAGTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTACAATTCTAGTTTTACCAAGAAATAACTGTAAACAGTGCACA  50

seq1  GTCACAAACGACAGGAATTGAAGGTACTCAGGAATTCAGAGCAAGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAACGACAGGAATTGAAGGTACTCAGGAATTCAGAGCAAGTGTCT  100

seq1  CCACTTGGGGGATGACAGGAAGTTTAAACGTTTTTTTCCCCTCAAACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGGGGATGACAGGAAGTTTAAACGTTTTTTTCCCCTCAAACTTT  150

seq1  GTTACATGTTCCAAATTCTCTGTAATAATTGTCTATTACATTCATAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATGTTCCAAATTCTCTGTAATAATTGTCTATTACATTCATAATAA  200

seq1  GAAAATTTGTGCAGTACAAAAGTCAGCCAGATTTGAGCTTCCTAATCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTGTGCAGTACAAAAGTCAGCCAGATTTGAGCTTCCTAATCTTC  250

seq1  ACAGCTATAAATGTAGAAAGTGAATGTCAGGTTTTATTAAAATTTAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATAAATGTAGAAAGTGAATGTCAGGTTTTATTAAAATTTAAGTT  300

seq1  CAGGACTGGAGAGACTGCTTAGCTGTTAGGAACACTGGCTGCTCTTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTGGAGAGACTGCTTAGCTGTTAGGAACACTGGCTGCTCTTCTAG  350

seq1  AGGTCCTGAGTTCAAATACCAGCCACCACCTGGTGGCTTAAGACCATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGAGTTCAAATACCAGCCACCACCTGGTGGCTTAAGACCATCTA  400

seq1  TAAAGGGAGGTAATGTCCTCTTCTGTCATGCAGGCACACATGCAAATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGAGGTAATGTCCTCTTCTGTCATGCAGGCACACATGCAAATAGA  450

seq1  GCCCTCATAATACAAATAAATACATCTTTTTTTAAACAAAACAAAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCATAATACAAATAAATACATCTTTTTTTAAACAAAACAAAAATCT  500

seq1  AAGTTTAGGGAATAACTAAATATGTTAGAGTTTTTTGTTATTAAGTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGGGAATAACTAAATATGTTAGAGTTTTTTGTTATTAAGTGTAT  550

seq1  CTGTGTGTATGCAGGTAGGGGTGTGTGTGTGTATGTGTGTATGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTATGCAGGTAGGGGTGTGTGTGTGTATGTGTGTATGTGTGTGT  600

seq1  GTGTGTGTGTGTGTGTGTTCAGTAAGTCAAAAATCCACCTCTGGTATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTTCAGTAAGTCAAAAATCCACCTCTGGTATTGT  650

seq1  TCCTCAGGAAAATTAATATTTATTTATTTATTTCGGAGTCCAGGTCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGAAAATTAATATTTATTTATTTATTTCGGAGTCCAGGTCTCTC  700

seq1  ACCAGCCTGGAATTC  715
      |||||||||||||||
seq2  ACCAGCCTGGAATTC  715

seq1: chr10_120826213_120827227
seq2: B6Ng01-033J01.g_69_1076

seq1  GAATTCCCTTCATCCTGTGTAAACTGTCGGTTTAGTTAGTACAAGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCATCCTGTGTAAACTGTCGGTTTAGTTAGTACAAGCTGGC  50

seq1  CCAGTGAGTGAAGAGCAGTATTTGGTCTCCATTTTGCATTTACTTGTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGTGAAGAGCAGTATTTGGTCTCCATTTTGCATTTACTTGTTAG  100

seq1  TAAGGTGAGGCTCTCTTCTGTCAGCTTCCTTCGTGTGCCACACAGTGCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGAGGCTCTCTTCTGTCAGCTTCCTTCGTGTGCCACACAGTGCGA  150

seq1  GAGCAGACAATTCCATGTGGTGCATGAGAGCAGACAGTTCGGTCGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGACAATTCCATGTGGTGCATGAGAGCAGACAGTTCGGTCGTTTCT  200

seq1  GGTGTTGGGCCATCACAACCTAATTCCAGAGCATCCCGCCATCCCAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGGGCCATCACAACCTAATTCCAGAGCATCCCGCCATCCCAGATC  250

seq1  ATTGGTCACCCCTCCGCCATCTCTTCCCCGCCCTCAGGCAGCCTATAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCACCCCTCCGCCATCTCTTCCCCGCCCTCAGGCAGCCTATAACC  300

seq1  CTTTACCTCTGTGGAGTCATCTACCCTGGACGCCAAGTGTATGTGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTCTGTGGAGTCATCTACCCTGGACGCCAAGTGTATGTGCAGAA  350

seq1  CAGAAATGCACAGGGTAGGGCTTCCCCTGTCTTGACATTCAAGGCCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGCACAGGGTAGGGCTTCCCCTGTCTTGACATTCAAGGCCTTGT  400

seq1  ATAAGCTCGCTCCCATTCCCCACTACATGTCCTCAGCTTGACACCACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTCGCTCCCATTCCCCACTACATGTCCTCAGCTTGACACCACAGA  450

seq1  GGCCTGTGGGCTTGCTAAGACCTGTGATTCAGAGCTGATGTAGCAGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGGGCTTGCTAAGACCTGTGATTCAGAGCTGATGTAGCAGCACA  500

seq1  CTGAGAGAGCCAGCCTGGGAGTGGTGCTGCTCAGCTTCCTGTGCACCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAGCCAGCCTGGGAGTGGTGCTGCTCAGCTTCCTGTGCACCAGT  550

seq1  GTGCGTGTGAAACCCCGCATCAGCCACTAGCACCAGAAAGACAACCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGTGAAACCCCGCATCAGCCACTAGCACCAGAAAGACAACCCTAG  600

seq1  GACACGAGACGGCTGGTGTCACGTGTGCGGCACCCAGCTGCCAAGGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGAGACGGCTGGTGTCACGTGTGCGGCACCCAGCTGCCAAGGAAGA  650

seq1  TGTTAGACTGACAGAAGGGTCCCTTCTAGTCTGCCTGCCTTCGGCCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGACTGACAGAAGGGTCCCTTCTAGTCTGCCTGCCTTCGGCCTTCC  700

seq1  TCTGTCCTTGGCTGATGTCTGAAGCGGCC-TTGCCCCCTCTCACTCAAGA  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTGTCCTTGGCTGATGTCTGAAGCGGCCTTTGCCCCCTCTCACTCAAGA  750

seq1  CCACCCTCTCTCTGCCCACCTCCTGCCTGTTGTCCTGCCTTGTGCCTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCTCTCTGCCCACCTCCTGCCTGTTGTCCTGCCTTGTGCCTCAG  800

seq1  CCTCCCGAGCAGCTGGTGCTGCAGATGCCCCTGGCCCGGCTTGCCTGCTG  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTCCCGAGCAGCTGGTGCTGCAGATGTCCCTGGCCCGGCTTGCCTGCTG  850

seq1  CTTGTGGCCTGCTGA-GGTTTAGGCCCTGGCTCTCCCCCCCAGTCTGTTC  898
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  CTTGTGGCCTGCTGAGGGTTTAGGCCCTGGCTCTCCCCCCCAGTCTGTT-  899

seq1  CTGCTTCCTCCTCTTAGATGCTGTGGTTCACAACCCACCCAGGCTTTTAA  948
      ||| |||||||||||| ||||||||| ||| |||||||||||||||||||
seq2  CTGGTTCCTCCTCTTAAATGCTGTGG-TCAAAACCCACCCAGGCTTTTAA  948

seq1  ACCCTAGCTTGCTCCTGTCCTAGAGGCCAGAGTGTATGTCCCTGTCTCAG  998
      | |||| |||||||| |||||||||| || | |||||||||| ||   ||
seq2  A-CCTA-CTTGCTCC-GTCCTAGAGG-CAAAATGTATGTCCCGGTTCTAG  994

seq1  ATGTTTGTTTCCAGTGC  1015
      |  ||||||| ||||||
seq2  A--TTTGTTT-CAGTGC  1008