BAC Information

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BAC

Clone NameB6Ng01-034D23
Chromosome10 (Build37)
Map Location 63,101,045 - 63,224,810
singlet/doubletdoublet
Overlap geneCtnna3
Upstream geneDdx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream geneLrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034D23.bB6Ng01-034D23.g
ACCDH863056DH863057
length966698
definitionDH863056|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D23, 5' end.DH863057|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,101,045 - 63,102,022)(63,224,133 - 63,224,810)
sequence
gaattcttacactgaaggcagagatgcttcaggtgtggatgtattttcag
ccacaccccagaaatagaagaggcttgttatgtaacttacaagcagccac
accctgcttcagctataatttttctctcattcagaagaatcacagtggct
gggtgtggtgcctcacacccgtaattgcagatctcaagaggctgaaacag
gtcttacaccagaggtactgcctggagttgactttttgtgtagtgtgaga
gaaaaagatcaactttcatctgctacatgtatatacttagttttttaaac
cccgtttgttgaaggtcctgcctttttccctaatgagtatccttggtgtc
tttacaaaagtcagatagtcatagttgtatggtttaatatccaggtcaac
tactctgtcccaccgacctacgtgactgtcttcctgccaaccagtaccat
gctgcttttattactcgggcattgctttggatgctaatggtcatttgtgg
tttcatatgaatttaaagattagtattatacatttctatttctgtgaagg
ggtggtgctggaattttgattgatactgcactgaatctgtaagtcgattt
gggtaggatggtcatttttaccatattaaccttgactaaattcagtagca
tggaggacttttcatcttgtagtgggtttaattgggttccttgggtgttt
aaaggttcaatgtaagaagtagttgggactaaataaacttggactcaata
aaaattcttcctgaatattttaaaaagaactgaacaagttgttagaactt
aatttattcatttgacattatcaagcaagaatttggagcagcctgtatga
gtaacaaacattaggcatacatcaaacacaattcttcacggacataaatt
tagagattgcgatagtttagaatacttgctcaagttgtaaggacagaaag
gtatagtaacgtaaaa
cggaatttgaaagtcaggtctgcattgctagttacgaaagaggcgtaggt
aaaggatgatgatgtgaaaaggtaaggaagagaggacagaggaaaaatgt
caggtcacagccagcacgaattttaaagtgcaccgaacatcaccatctga
cagaacttctcagaaattatcctattaaattctcaagagatttctttcct
ttacagataaaaagaagtgtgagcaggtcacaaaatctaaaactgtaaga
tgccaggtagagcttacaaggatatattctgtgagatatttgatcttata
actcccaaataataaagccctcttagcacagggtgtctcaagtaactaga
gaggccagaagaggacgatggatctcctggtgcagagttgcagatcgttg
taagcatccctgtaggtgatagaaactgaatccagaccctgtgcaagaga
ggcaagcgttcctagccatcggctttctttcttcgttcttaagaagataa
tatcaatccaagaagccattatgaaactctgaatggctttttagagctat
ggtatcttcccttcactgaaacctccaaagttccagggattctgtaacag
ggtttatgaaaacacagcaatacatgccttaccgagtggtggtggtgcac
gggttttaaccccagcacttgggagggagagggaggggggatttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_63101045_63102022
seq2: B6Ng01-034D23.b_46_1011

seq1  GAATTCTTACACTGAAGGCAGAGATGCTTCAGGTGTGGATGTATTTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACACTGAAGGCAGAGATGCTTCAGGTGTGGATGTATTTTCAG  50

seq1  CCACACCCCAGAAATAGAAGAGGCTTGTTATGTAACTTACAAGCAGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCCCAGAAATAGAAGAGGCTTGTTATGTAACTTACAAGCAGCCAC  100

seq1  ACCCTGCTTCAGCTATAATTTTTCTCTCATTCAGAAGAATCACAGTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTTCAGCTATAATTTTTCTCTCATTCAGAAGAATCACAGTGGCT  150

seq1  GGGTGTGGTGCCTCACACCCGTAATTGCAGATCTCAAGAGGCTGAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGTGCCTCACACCCGTAATTGCAGATCTCAAGAGGCTGAAACAG  200

seq1  GTCTTACACCAGAGGTACTGCCTGGAGTTGACTTTTTGTGTAGTGTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACACCAGAGGTACTGCCTGGAGTTGACTTTTTGTGTAGTGTGAGA  250

seq1  GAAAAAGATCAACTTTCATCTGCTACATGTATATACTTAGTTTTTTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATCAACTTTCATCTGCTACATGTATATACTTAGTTTTTTAAAC  300

seq1  CCCGTTTGTTGAAGGTCCTGCCTTTTTCCCTAATGAGTATCCTTGGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTTGTTGAAGGTCCTGCCTTTTTCCCTAATGAGTATCCTTGGTGTC  350

seq1  TTTACAAAAGTCAGATAGTCATAGTTGTATGGTTTAATATCCAGGTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAAAGTCAGATAGTCATAGTTGTATGGTTTAATATCCAGGTCAAC  400

seq1  TACTCTGTCCCACCGACCTACGTGACTGTCTTCCTGCCAACCAGTACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTCCCACCGACCTACGTGACTGTCTTCCTGCCAACCAGTACCAT  450

seq1  GCTGCTTTTATTACTCGGGCATTGCTTTGGATGCTAATGGTCATTTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTTATTACTCGGGCATTGCTTTGGATGCTAATGGTCATTTGTGG  500

seq1  TTTCATATGAATTTAAAGATTAGTATTATACATTTCTATTTCTGTGAA-G  549
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTCATATGAATTTAAAGATTAGTATTATACATTTCTATTTCTGTGAAGG  550

seq1  GGTGGTGCTGGAATTTTGATTGATACTGCACTGAATCTGTAAGTCGATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCTGGAATTTTGATTGATACTGCACTGAATCTGTAAGTCGATTT  600

seq1  GGGTAGGATGGTCATTTTTACAATATTAACC-TGACT-AATTCAGTAGCA  647
      ||||||||||||||||||||| ||||||||| ||||| ||||||||||||
seq2  GGGTAGGATGGTCATTTTTACCATATTAACCTTGACTAAATTCAGTAGCA  650

seq1  TGGAGGACTTTTCATCTTGTAGTGGTTTTAATTGTGTT-CTTTGGTGTTT  696
      ||||||||||||||||||||||||| |||||||| ||| ||| |||||||
seq2  TGGAGGACTTTTCATCTTGTAGTGGGTTTAATTGGGTTCCTTGGGTGTTT  700

seq1  TAAGGTTCAATGTAAGAAGTAGTTGGGACTAAATAAACTTGGACTCAAT-  745
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAGGTTCAATGTAAGAAGTAGTTGGGACTAAATAAACTTGGACTCAATA  750

seq1  AAAATTCTTCTTGATTATTTTAAAAAGAACTGAGCAAGTTGTTAG-ACTT  794
      |||||||||| ||| |||||||||||||||||| ||||||||||| ||||
seq2  AAAATTCTTCCTGAATATTTTAAAAAGAACTGAACAAGTTGTTAGAACTT  800

seq1  AATTTATTCATTTGACATTTATCAAGCAAGAGTTTGGAGCAGCCTGTATG  844
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  AATTTATTCATTTGACA-TTATCAAGCAAGAATTTGGAGCAGCCTGTATG  849

seq1  AGTAACAAACATTAGCAATACCATCAAACACAATTACTTCCACGGAACTT  894
      |||||||||||||||  ||| |||||||||||||| ||| ||||||  | 
seq2  AGTAACAAACATTAGGCATA-CATCAAACACAATT-CTT-CACGGACAT-  895

seq1  AAAATTTAGTAGATTGCGAGTAGTTATAGAAATACTTGCTTCTAGAGTTG  944
       |||||||| ||||||||| ||||| ||| ||||||||   ||  |||||
seq2  -AAATTTAG-AGATTGCGA-TAGTT-TAG-AATACTTG---CTCAAGTTG  937

seq1  TAAAGTACTAGAAAGGTTATTAGTAAGCGTAAAA  978
      | ||| || ||||||||   |||||| |||||||
seq2  T-AAGGAC-AGAAAGGT--ATAGTAA-CGTAAAA  966

seq1: chr10_63224133_63224810
seq2: B6Ng01-034D23.g_79_765 (reverse)

seq1  TCAGAAAT-CCACCTGCCTCTGCCTCCCAAGTGCTGGGATT-AAAGCCGT  48
      |||||||| || ||| ||||| |||||||||||||||| || ||| ||||
seq2  TCAGAAATCCCCCCTCCCTCTCCCTCCCAAGTGCTGGGGTTAAAACCCGT  50

seq1  GCACCACCACCACTCGGT-AGGCATGTATTGCTGTGTTT--CTTAACCCT  95
      |||||||||||||||||| ||||||||||||||||||||   | ||||||
seq2  GCACCACCACCACTCGGTAAGGCATGTATTGCTGTGTTTTCATAAACCCT  100

seq1  GTTACAGAATCCCTGGAACTTTGGAGGTTTCAGTGTA-GGAAGATACCAT  144
      ||||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  GTTACAGAATCCCTGGAACTTTGGAGGTTTCAGTGAAGGGAAGATACCAT  150

seq1  AGCTCT-AAAAGCCATTCAGAG-TTCATAATGGCTTCTTGGATTGATATT  192
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCTCTAAAAAGCCATTCAGAGTTTCATAATGGCTTCTTGGATTGATATT  200

seq1  ATCTTCTTAAGAACGAAGAAAG-AAGCCGATGGCTAGGAACGCTTGCCTC  241
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCTTCTTAAGAACGAAGAAAGAAAGCCGATGGCTAGGAACGCTTGCCTC  250

seq1  TCTTGCACAGGGTCTGGATTCAGTTTCTATCACCTACAGGGATGCTTACA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCACAGGGTCTGGATTCAGTTTCTATCACCTACAGGGATGCTTACA  300

seq1  ACGATCTGCAACTCTGCACCAGGAGATCCATCGTCCTCTTCTGGCCTCTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATCTGCAACTCTGCACCAGGAGATCCATCGTCCTCTTCTGGCCTCTC  350

seq1  TAGTTACTTGAGACACCCTGTGCTAAGAGGGCTTTATTATTTGGGAGTTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTTGAGACACCCTGTGCTAAGAGGGCTTTATTATTTGGGAGTTA  400

seq1  TAAGATCAAATATCTCACAGAATATATCCTTGTAAGCTCTACCTGGCATC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCAAATATCTCACAGAATATATCCTTGTAAGCTCTACCTGGCATC  450

seq1  TTACAGTTTTAGATTTTGTGACCTGCTCACACTTCTTTTTATCTGTAAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTTAGATTTTGTGACCTGCTCACACTTCTTTTTATCTGTAAAG  500

seq1  GAAAGAAATCTCTTGAGAATTTAATAGGATAATTTCTGAGAAGTTCTGTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATCTCTTGAGAATTTAATAGGATAATTTCTGAGAAGTTCTGTC  550

seq1  AGATGGTGATGTTCGGTGCACTTTAAAATTCGTGCTGGCTGTGACCTGAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGATGTTCGGTGCACTTTAAAATTCGTGCTGGCTGTGACCTGAC  600

seq1  ATTTTTCCTCTGTCCTCTCTTCCTTACCTTTTCACATCATCATCCTTTAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTCTGTCCTCTCTTCCTTACCTTTTCACATCATCATCCTTTAC  650

seq1  CTACGCCTCTTTCGTAACTAGCAATGCAGACCTGACT  678
      |||||||||||||||||||||||||||||||||||||
seq2  CTACGCCTCTTTCGTAACTAGCAATGCAGACCTGACT  687