BAC Information

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BAC

Clone NameB6Ng01-034J22
Chromosome10 (Build37)13 (Build37)
Map Location 104,053,903 - 104,054,36362,994,056 - 62,995,080
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034J22.bB6Ng01-034J22.g
ACCDH863318DH863319
length8531,025
definitionDH863318|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J22, 5' end.DH863319|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(62,994,056 - 62,995,080)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcatggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
tagaatatccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggaggtacagagacaagtttggagctgagataaa
aagatggaccatgtagagactgccatatccggggatcatcccataatcag
ctttcaaatgctgacaccattgcatacactagcagattatgctgaaagga
ccc
gaattcattgtttttaatagctgagctggctagaaatctctggagcatga
acatagctcttttagaattttttctagaaaatccaagaactttttttgta
gcagcttttctgcttttggttggaaaatccatgaactaccagagagcttt
tagaaacatttttttctagtaagagagttatctcaagcagagagaactgt
cttgagagagagagatgatgtctcaagcagaaggatgtctcgaacagagt
acaaagcataacctacctactgcgatctatctagggagctatctcaagca
gaacggaggctgtcagcttggatgcacaatttgacttctagttgtttgtt
ttaccactccaaaacaccccttctctcagaacccctctccaagccaaggc
tagtccctggcatccttgggccaggggcgcactgctaagtgaccgagtgc
ttatctagcatgcaagtattcatgcagtcctagattctatccctagcaca
ctaaataaacacatgaataaataaatagatttcctcttctgtttatcatc
agacagtggaagagttgggatttgagcccagaatttggctttgctttctg
tctgtaacatactgcatctttatcaccgatggtacagaggaggggtgcga
ggatacaggcctcactctcctacaaaccagaccaccttaggaatatcagc
ttgcttctttgggccaagttttgtcatctgtaaaataaagaggagttatg
taaccatcattcaaaatgtcttgagtgcttattgcatgtctggctaagat
tttttttttttttttcagatgaattctctcattctgtcccaccccagtcc
tgtgatgagtgcaatcagaatttattcccctttcacaacggggaagctgt
ggtttagagaactcagtactttctcggttcacacagctggagtggggtgg
actgacactcagacgggccactgagtgcacgtgctagctgtctgttctca
gggatctcagagtcaggttctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-034J22.b_48_518 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCCTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||| |||| |||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATATCCAGTTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCATGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471

seq1: chr13_62994056_62995080
seq2: B6Ng01-034J22.g_77_1090

seq1  TTTTAATAGCTGAGCTGGCTAGAAATCTCTGGAGCATGAACATAGCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAGCTGAGCTGGCTAGAAATCTCTGGAGCATGAACATAGCTCTT  50

seq1  TTAGAATTTTTTCTAGAAAATCCAAGAACTTTTTTTGTAGCAGCTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTTTTCTAGAAAATCCAAGAACTTTTTTTGTAGCAGCTTTTCT  100

seq1  GCTTTTGGTTGGAAAATCCATGAACTACCAGAGAGCTTTTAGAAACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGTTGGAAAATCCATGAACTACCAGAGAGCTTTTAGAAACATTT  150

seq1  TTTTCTAGTAAGAGAGTTATCTCAAGCAGAGAGAACTGTCTTGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGTAAGAGAGTTATCTCAAGCAGAGAGAACTGTCTTGAGAGAGA  200

seq1  GAGATGATGTCTCAAGCAGAAGGATGTCTCGAACAGAGTACAAAGCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATGTCTCAAGCAGAAGGATGTCTCGAACAGAGTACAAAGCATAA  250

seq1  CCTACCTACTGCGATCTATCTAGGGAGCTATCTCAAGCAGAACGGAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTACTGCGATCTATCTAGGGAGCTATCTCAAGCAGAACGGAGGCT  300

seq1  GTCAGCTTGGATGCACAATTTGACTTCTAGTTGTTTGTTTTACCACTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTGGATGCACAATTTGACTTCTAGTTGTTTGTTTTACCACTCCA  350

seq1  AAACACCCCTTCTCTCAGAACCCCTCTCCAAGCCAAGGCTAGTCCCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCCTTCTCTCAGAACCCCTCTCCAAGCCAAGGCTAGTCCCTGGC  400

seq1  ATCCTTGGGCCAGGGGCGCACTGCTAAGTGACCGAGTGCTTATCTAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGGGCCAGGGGCGCACTGCTAAGTGACCGAGTGCTTATCTAGCAT  450

seq1  GCAAGTATTCATGCAGTCCTAGATTCTATCCCTAGCACACTAAATAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTATTCATGCAGTCCTAGATTCTATCCCTAGCACACTAAATAAACA  500

seq1  CATGAATAAATAAATAGATTTCCTCTTCTGTTTATCATCAGACAGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAAATAAATAGATTTCCTCTTCTGTTTATCATCAGACAGTGGAA  550

seq1  GAGTTGGGATTTGAGCCCAGAATTTGGCTTTGCTTTCTGTCTGTAACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGGATTTGAGCCCAGAATTTGGCTTTGCTTTCTGTCTGTAACATA  600

seq1  CTGCATCTTTATCACCGATGGTACAGAGGAGGGGTGCGAGGATACAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTTTATCACCGATGGTACAGAGGAGGGGTGCGAGGATACAGGCC  650

seq1  TCACTCTCCTACAAACCAGACCACCTTAGGAATATCAGCTTGCTTCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTCCTACAAACCAGACCACCTTAGGAATATCAGCTTGCTTCTTTG  700

seq1  GGCCAAGTTTTGTCATCTGTAAAATAAAGAGGAGTTATGTAACCATCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGTTTTGTCATCTGTAAAATAAAGAGGAGTTATGTAACCATCATT  750

seq1  CAAAATGTCTTGAGTGCTTATTGCATGTCTGGCTAAGA-TTTTTTTTTTT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAAATGTCTTGAGTGCTTATTGCATGTCTGGCTAAGATTTTTTTTTTTT  800

seq1  TTTTCAGATGAATTCTCTCATTCTGTCCCACCCCAGTCCTGTGATGAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTCAGATGAATTCTCTCATTCTGTCCCACCCCAGTCCTGTGATGA-GT  849

seq1  GCAATCAGAATTTATTCCCCTTCCACAAACGGGGAAGCTGTGGTTTAGAG  899
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  GCAATCAGAATTTATTCCCCTTTCAC-AACGGGGAAGCTGTGGTTTAGAG  898

seq1  AAACTCAGTAACTTTCTCCGGTTCACACAGCT-GAGTGGGGTGGACCTTG  948
       |||||||| ||||||| |||||||||||||| |||||||||||||  ||
seq2  -AACTCAGT-ACTTTCT-CGGTTCACACAGCTGGAGTGGGGTGGAC--TG  943

seq1  ACACTCAGACGGGCCAACTTGAGTGCACGTGCTTAGCCTGTCTGTTCTCC  998
      ||||||||||||||||   ||||||||||||| ||| |||||||||||| 
seq2  ACACTCAGACGGGCCA--CTGAGTGCACGTGC-TAG-CTGTCTGTTCTCA  989

seq1  AGGATCTCAGAGTCCAGGTTTCTCTGC  1025
       |||||||||||| |||| ||||||||
seq2  GGGATCTCAGAGT-CAGG-TTCTCTGC  1014