BAC Information

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BAC

Clone NameB6Ng01-034M16
Chromosome10 (Build37)
Map Location 17,508,526 - 17,632,470
singlet/doubletdoublet
Overlap geneTxlnb, LOC665321, Heca
Upstream geneLOC100039576, LOC627511, Cited2
Downstream gene3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034M16.bB6Ng01-034M16.g
ACCDH863440DH863441
length8451,012
definitionDH863440|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M16, 5' end.DH863441|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,508,526 - 17,509,326)(17,631,443 - 17,632,470)
sequence
gaattcctagaatggcagcaggggaaagccagcccagttgtgcacccagg
tccaggagcgacctgaccagcagccagagatcagtcctatttgggtatgg
agatgtaatcaccacagaaatgctaggatccgtgaattatctaatagttt
ttatcttgagagagataatatagagacatacttcacagggttcttgtgca
gtttgagaagatagagaagttccaatatcaaatcattaaaaatagccagg
tatggtggtacatggatggtcacaaccccagttagcagaaaataaaattt
ctttttattgaaaatacttttttttgcatacactatattctggtcatggt
tttccttcccccaactcctcccagatcctaccaacccaactccgtccttt
gtgtgtccctagctgtcctggaacgcactccagagacccagccagcctca
aactcagaaatttgcctgcctctgcttccgccttttgagtgctgagatta
atcctctctcttatagagaaatttaatccagcagtatggctactctgtca
agggatcatatccaaaggccttctgggtctgtgtgagctgactgaaatac
agacaaggctttagtacacaccttgaatccctctggctagaatacagaca
cacctttagtgcatgcttccaaacccaaacaatgacttctaattgagagg
cagccaaactgactgcagagagagaattgacagaatgagtcagaggtagg
ataatcccaactcacatgggatcagcataggaaaaagaggctacttaaga
gcagagatagagatagagagatgagagagataaagagatatagag
gaattctttagtttttgttgtaaagtgaaactccccaaagcccagtggcc
tcaagggacttaagccctctcatggtttcatggctgggttggttaggacg
gtttctcatccaaccggtgatagacaggttggcttctggaactcccatgg
aatgggttctctgttagccatgcccacctttatcctccattaggttaatt
tgaggtttttttttttaagttgtgcttctaattgaacggattgtagtgta
atgtttttgtgcctgtttatattatgtaataagattagggtactgaagat
tccattcacttcatatttataatctatgtgataagaatgttccaaatcct
actaattttgaaaaatatataatgaactgtagtcactacaatacagtgaa
acattagcacttttactcctcctaacaatatagttgtttgcccattaact
agcctcttcctcccaccccagtgtctctctcttccctaggagaggtaacc
actgtacttcatccttgtacatcacacagctatgtggatcacatggtatc
agtctttttgtgcctggtttatttattacttaataaaatgtccttcaggt
atatccatttaatggaagtatgattaaatttctttggttgctaaatatgt
gtgtatatgtatgtaaacaaaatattttcttttgtcatttaatcttgtaa
tggacacttagtttgattctgtagcttttgtgaggaatactgcagtgaat
atgggaatacctgtacttctgacatactgatttgacctctggatcatgtg
gtaattctaattaattctaatattacacaagtcaagaattatattattct
tagttacacaagtcaaacattctattattaggtaattcatattttattta
tgtgttatttttgaaacagatctagagtgtagccttggctggcctgactc
tatagatcgggtgcctcaactcagagatcagtggctctcctcaaatgctg
ggattaaaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17508526_17509326
seq2: B6Ng01-034M16.b_45_845

seq1  GAATTCCTAGAATGGCAGCAGGGGAAAGCCAGCCCAGTTGTGCACCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAATGGCAGCAGGGGAAAGCCAGCCCAGTTGTGCACCCAGG  50

seq1  TCCAGGAGCGACCTGACCAGCAGCCAGAGATCAGTCCTATTTGGGTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGCGACCTGACCAGCAGCCAGAGATCAGTCCTATTTGGGTATGG  100

seq1  AGATGTAATCACCACAGAAATGCTAGGATCCGTGAATTATCTAATAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAATCACCACAGAAATGCTAGGATCCGTGAATTATCTAATAGTTT  150

seq1  TTATCTTGAGAGAGATAATATAGAGACATACTTCACAGGGTTCTTGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTGAGAGAGATAATATAGAGACATACTTCACAGGGTTCTTGTGCA  200

seq1  GTTTGAGAAGATAGAGAAGTTCCAATATCAAATCATTAAAAATAGCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGAAGATAGAGAAGTTCCAATATCAAATCATTAAAAATAGCCAGG  250

seq1  TATGGTGGTACATGGATGGTCACAACCCCAGTTAGCAGAAAATAAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGTACATGGATGGTCACAACCCCAGTTAGCAGAAAATAAAATTT  300

seq1  CTTTTTATTGAAAATACTTTTTTTTGCATACACTATATTCTGGTCATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTGAAAATACTTTTTTTTGCATACACTATATTCTGGTCATGGT  350

seq1  TTTCCTTCCCCCAACTCCTCCCAGATCCTACCAACCCAACTCCGTCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCCCCAACTCCTCCCAGATCCTACCAACCCAACTCCGTCCTTT  400

seq1  GTGTGTCCCTAGCTGTCCTGGAACGCACTCCAGAGACCCAGCCAGCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCCTAGCTGTCCTGGAACGCACTCCAGAGACCCAGCCAGCCTCA  450

seq1  AACTCAGAAATTTGCCTGCCTCTGCTTCCGCCTTTTGAGTGCTGAGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATTTGCCTGCCTCTGCTTCCGCCTTTTGAGTGCTGAGATTA  500

seq1  ATCCTCTCTCTTATAGAGAAATTTAATCCAGCAGTATGGCTACTCTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCTCTTATAGAGAAATTTAATCCAGCAGTATGGCTACTCTGTCA  550

seq1  AGGGATCATATCCAAAGGCCTTCTGGGTCTGTGTGAGCTGACTGAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCATATCCAAAGGCCTTCTGGGTCTGTGTGAGCTGACTGAAATAC  600

seq1  AGACAAGGCTTTAGTACACACCTTGAATCCCTCTGGCTAGAATACAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGCTTTAGTACACACCTTGAATCCCTCTGGCTAGAATACAGACA  650

seq1  CACCTTTAGTGCATGCTTCCAAACCCAAACAATGACTTCTAATTGAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAGTGCATGCTTCCAAACCCAAACAATGACTTCTAATTGAGAGG  700

seq1  CAGCCAAACTGACTGCAGAGAGAGAATTGACAGAATGAGTCAGAGGTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAACTGACTGCAGAGAGAGAATTGACAGAATGAGTCAGAGGTAGG  750

seq1  ATAATCCCAACTCACATGGGATCAGCATAGGAAAAAGAGGCTACTTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCCAACTCACATGGGATCAGCATAGGAAAAAGAGGCTACTTAAGA  800

seq1  G  801
      |
seq2  G  801

seq1: chr10_17631443_17632470
seq2: B6Ng01-034M16.g_68_1079 (reverse)

seq1  CACCTTTAATCCCAGCACTCTGGAGGAAGAGCCATACTGATCTCTGAGGT  50
      |||||||||||||||||   | |||| ||||||  |||||||||||| ||
seq2  CACCTTTAATCCCAGCA--TTTGAGG-AGAGCC--ACTGATCTCTGA-GT  44

seq1  TGAGGCCACCCGATCTATAGGAAGTTCCAGGCCAGCCAAGGCTACACTCT  100
      ||||| ||||||||||||||  |||  |||||||||||||||||||||||
seq2  TGAGG-CACCCGATCTATAG--AGT--CAGGCCAGCCAAGGCTACACTCT  89

seq1  AAGATTCTGTTTCAAAAATAAACACATAAATAAAAATTATGAATTACCTA  150
       ||| |||||||||||||| |||||||||||||||  |||||||||||||
seq2  -AGA-TCTGTTTCAAAAAT-AACACATAAATAAAA--TATGAATTACCTA  134

seq1  ATAATAGAATGGTTTGACTTGTGTAACT-AGAATTATATAATTCTTGACT  199
      |||||||||| ||||||||||||||||| ||||| |||||||||||||||
seq2  ATAATAGAAT-GTTTGACTTGTGTAACTAAGAATAATATAATTCTTGACT  183

seq1  TGTGTAATTATTAGAATTAATTAGAATTACCACATGATCCAGAGGTCAAA  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAA-TATTAGAATTAATTAGAATTACCACATGATCCAGAGGTCAAA  232

seq1  TCAGTATGTCAGAAGTACAGGTATTCCCATATTCACTGCAGTATTCCTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGTCAGAAGTACAGGTATTCCCATATTCACTGCAGTATTCCTCA  282

seq1  CAAAAGCTACAGAATCAAACTAAGTGTCCATTACAAGATTAAATGAC-AA  348
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAAAGCTACAGAATCAAACTAAGTGTCCATTACAAGATTAAATGACAAA  332

seq1  AGAAAATATTTTGTTTACATACATATACACACATATTTAGCAACCAAAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATTTTGTTTACATACATATACACACATATTTAGCAACCAAAGA  382

seq1  AATTTAATCATACTTCCATTAAATGGATATACCTGAAGGACATTTTATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATCATACTTCCATTAAATGGATATACCTGAAGGACATTTTATTA  432

seq1  AGTAATAAATAAACCAGGCACAAAAAGACTGATACCATGTGATCCACATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAAATAAACCAGGCACAAAAAGACTGATACCATGTGATCCACATA  482

seq1  GCTGTGTGATGTACAAGGATGAAGTACAGTGGTTACCTCTCCTAGGGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGATGTACAAGGATGAAGTACAGTGGTTACCTCTCCTAGGGAAG  532

seq1  AGAGAGACACTGGGGTGGGAGGAAGAGGCTAGTTAATGGGCAAACAACTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACACTGGGGTGGGAGGAAGAGGCTAGTTAATGGGCAAACAACTA  582

seq1  TATTGTTAGGAGGAGTAAAAGTGCTAATGTTTCACTGTATTGTAGTGACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAGGAGGAGTAAAAGTGCTAATGTTTCACTGTATTGTAGTGACT  632

seq1  ACAGTTCATTATATATTTTTCAAAATTAGTAGGATTTGGAACATTCTTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCATTATATATTTTTCAAAATTAGTAGGATTTGGAACATTCTTAT  682

seq1  CACATAGATTATAAATATGAAGTGAATGGAATCTTCAGTACCCTAATCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGATTATAAATATGAAGTGAATGGAATCTTCAGTACCCTAATCTT  732

seq1  ATTACATAATATAAACAGGCACAAAAACATTACACTACAATCCGTTCAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATAATATAAACAGGCACAAAAACATTACACTACAATCCGTTCAAT  782

seq1  TAGAAGCACAACTTAAAAAAAAAAACCTCAAATTAACCTAATGGAGGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCACAACTTAAAAAAAAAAACCTCAAATTAACCTAATGGAGGATA  832

seq1  AAGGTGGGCATGGCTAACAGAGAACCCATTCCATGGGAGTTCCAGAAGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGCATGGCTAACAGAGAACCCATTCCATGGGAGTTCCAGAAGCC  882

seq1  AACCTGTCTATCACCGGTTGGATGAGAAACCGTCCTAACCAACCCAGCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTCTATCACCGGTTGGATGAGAAACCGTCCTAACCAACCCAGCCA  932

seq1  TGAAACCATGAGAGGGCTTAAGTCCCTTGAGGCCACTGGGCTTTGGGGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCATGAGAGGGCTTAAGTCCCTTGAGGCCACTGGGCTTTGGGGAG  982

seq1  TTTCACTTTACAACAAAAACTAAAGAATTC  1028
      ||||||||||||||||||||||||||||||
seq2  TTTCACTTTACAACAAAAACTAAAGAATTC  1012