BAC Information

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BAC

Clone NameB6Ng01-034N06
Chromosome10 (Build37)8 (Build37)
Map Location 104,053,903 - 104,054,36341,972,810 - 41,973,933
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034N06.bB6Ng01-034N06.g
ACCDH863464DH863465
length6661,108
definitionDH863464|Mus musculus domesticus DNA, BAC clone: B6Ng01-034N06, 5' end.DH863465|Mus musculus domesticus DNA, BAC clone: B6Ng01-034N06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(41,972,810 - 41,973,933)
sequence
gaattctcacttgaggaatagcgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcattagggaaatgcaaatcaaaacaacccttagat
tccacctcacaccagtcacaatagctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaataccactcctcagc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaagccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttgcacaatg
gagtactagtcagctattaaacaaaatgaatttatgaaattcctaggcaa
atggatggacctggagggtatcatcctaaagtgaggatatcctaagtgat
aataacccaatcacaaaggaaactctcacaatatggtactcactgataag
tgaatattagcccagaaacttaggatacccaagatataagatacaatttg
ctaaatacatgaaact
gaattcccaaggcagtcacagttattctttatggtatctgcctacctgtc
ttgtccccccttagattgaggagtcattatttgacaggattctcatattt
gatttttttcttattctcaaacggcattgctatttatgactatgaagcca
tagccatattttctctgagtacttaaaaaaaaccctttaaagggatttgg
gggagcacaagtatagactgagcacattggctagtcattactgaatgtta
tcaggtacgagcaaaatatttccctgtcactaagagacattttatgaata
ttatcaaaaagtatttactgcaaagtatattgctcaaactttcaatggtt
aactctctttcttttaattttatgtcaacaaagaatacatttgtttaaga
atctttcaaaggagacttaaaaacaaacaaagaaacaaaaaaccaaaaaa
aaaaaacaaaaacaaaaaacaaaaaaaacaaccaaactgcctgctcacag
gaatgtctttgttagcaaacaacaaaaatgatctttcaacatctgcagct
ctagaacctcctatcagttgcttcatgaccatgagtggaaaatgatcaac
agtccactgctaaggagacaaacagggctcttgatcattcaaaagtaaac
agctgattgtcaaattaagacctgagcaaatacatcctttccggactgcc
acagtgcctccgtcaggacctgcccctcttttacttcacatgtcccacgc
tgtcatccacagtgtcccattgtctggacatccttctgtggatgcacata
caacccatggaaagacaagaagcaaacacagcaaacactagtaactacaa
ctaagattcccaggcccttctttgtagtatattctgggattgactatttt
tgcttgttcttgttgtatggatttcattgtatgtggacagtgtgtgttta
agtgcacttcttcatgcgggatggtcactttgattatatggtcattagct
aaagaacccaccaaatcagttgccccttaaaaagagccttttacaattgt
ttcctaaccaaaatttctcaatgaaaaatccttcttctaggatgtgaatg
aacatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-034N06.b_44_514 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||| |||||||||||||||||||||
seq2  TTTAATAGCTGACTAGTACTCCATTGTGCAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||||||||||| |||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGCTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||| ||||||||||||||||||  || || |||||||||||||||||||
seq2  TGGGACATCTTCTGGATATATGCTGAGGAGTGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGAAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  TCCACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCTA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGTGACTGGTGTGAGGTGGAATCTAAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTAATGATTAAGGATGTTGAACATTTTTTCAAGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
       ||||||||| ||||||||||
seq2  CTATTCCTCAAGTGAGAATTC  471

seq1: chr8_41972810_41973933
seq2: B6Ng01-034N06.g_69_1176 (reverse)

seq1  AGGATGTTCATCTACATCACTAGAAGAGGGATATTTTTCATTGTGGATAT  50
      |||||||||||  ||||| |||||||| ||  ||||||||||| |   | 
seq2  AGGATGTTCATTCACATC-CTAGAAGAAGG--ATTTTTCATTGAG--AAA  45

seq1  TTTTGGTTTGGAGGAAAACAATTGTAAAAGGCTTCTTTTTTAAAGGGGCA  100
      |||||||| ||    ||||||||||||||||| |||||||  ||||||||
seq2  TTTTGGTTAGG----AAACAATTGTAAAAGGC-TCTTTTT--AAGGGGCA  88

seq1  ACTGATTTGGTGGGTCTGTTAGCTTAATTGACCATAATAATCAAAGTGAC  150
      |||||||||||||||   ||||||  | ||||||| ||||||||||||||
seq2  ACTGATTTGGTGGGTTCTTTAGCT--AATGACCAT-ATAATCAAAGTGAC  135

seq1  CATTCCCGCATGAAGAAGTGCACTTAAACACCACACTGTCCACATACAAT  200
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CA-TCCCGCATGAAGAAGTGCACTTAAACA-CACACTGTCCACATACAAT  183

seq1  GAAATCCATACAACAAGAACAAGCAAAAATAGTCAATCCCAGAATATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCATACAACAAGAACAAGCAAAAATAGTCAATCCCAGAATATACT  233

seq1  ACAAAGAAGGGCCTGGAAATCTTAGTTGTAGTTACTAGTGTTTGCTGTGT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAAAGAAGGGCCTGGGAATCTTAGTTGTAGTTACTAGTGTTTGCTGTGT  283

seq1  TTGCTTCTTGTCTTTCCATGGGTTGTATGTGCATCCACAGAAGGATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTTGTCTTTCCATGGGTTGTATGTGCATCCACAGAAGGATGTCC  333

seq1  AGACAATGGGACACTGTGGATGACAGCGTGGGACATGTGAAGTAAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGGGACACTGTGGATGACAGCGTGGGACATGTGAAGTAAAAGAG  383

seq1  GGGCAGGTCCTGACGGAGGCACTGTGGCAGTCCGG-AAGGATGTATTTGC  449
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGGCAGGTCCTGACGGAGGCACTGTGGCAGTCCGGAAAGGATGTATTTGC  433

seq1  TCAGGTCTTAATTTGACAATCAGCTGTTTACTTTTGAATGATCAAGAGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTTAATTTGACAATCAGCTGTTTACTTTTGAATGATCAAGAGCC  483

seq1  CTGTTTGTCTCCTTAGCAGTGGACTGTTGATCATTTTCCACTCATGGTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTCTCCTTAGCAGTGGACTGTTGATCATTTTCCACTCATGGTCA  533

seq1  TGAAGCAACTGATAGGAGGTTCTAGAGCTGCAGATGTTGAAAGATCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAACTGATAGGAGGTTCTAGAGCTGCAGATGTTGAAAGATCATTT  583

seq1  TTGTTGTTTGCTAACAAAGACATTCCTGTGAGCAGGCAGTTTGGTTGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTTGCTAACAAAGACATTCCTGTGAGCAGGCAGTTTGGTTGTTT  633

seq1  TTTTTGTTTTTTGTTTTTGTTTTTTTTTTTTGGTTTTTTGTTTCTTTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTGTTTTTGTTTTTTTTTTTTGGTTTTTTGTTTCTTTGTT  683

seq1  TGTTTTTAAGTCTCCTTTGAAAGATTCTTAAACAAATGTATTCTTTGTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAGTCTCCTTTGAAAGATTCTTAAACAAATGTATTCTTTGTTG  733

seq1  ACATAAAATTAAAAGAAAGAGAGTTAACCATTGAAAGTTTGAGCAATATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATTAAAAGAAAGAGAGTTAACCATTGAAAGTTTGAGCAATATA  783

seq1  CTTTGCAGTAAATACTTTTTGATAATATTCATAAAATGTCTCTTAGTGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGTAAATACTTTTTGATAATATTCATAAAATGTCTCTTAGTGAC  833

seq1  AGGGAAATATTTTGCTCGTACCTGATAACATTCAGTAATGACTAGCCAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATATTTTGCTCGTACCTGATAACATTCAGTAATGACTAGCCAAT  883

seq1  GTGCTCAGTCTATACTTGTGCTCCCCCAAATCCCTTTAAAGGGTTTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGTCTATACTTGTGCTCCCCCAAATCCCTTTAAAGGGTTTTTTT  933

seq1  TAAGTACTCAGAGAAAATATGGCTATGGCTTCATAGTCATAAATAGCAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACTCAGAGAAAATATGGCTATGGCTTCATAGTCATAAATAGCAAT  983

seq1  GCCGTTTGAGAATAAGAAAAAAATCAAATATGAGAATCCTGTCAAATAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTTGAGAATAAGAAAAAAATCAAATATGAGAATCCTGTCAAATAAT  1033

seq1  GACTCCTCAATCTAAGGGGGGACAAGACAGGTAGGCAGATACCATAAAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCAATCTAAGGGGGGACAAGACAGGTAGGCAGATACCATAAAGA  1083

seq1  ATAACTGTGACTGCCTTGGGAATTC  1124
      |||||||||||||||||||||||||
seq2  ATAACTGTGACTGCCTTGGGAATTC  1108