BAC Information

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BAC

Clone NameB6Ng01-035F01
Chromosome10 (Build37)3 (Build37)
Map Location 104,053,903 - 104,054,36377,413,491 - 77,414,454
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035F01.bB6Ng01-035F01.g
ACCDH863815DH863816
length586942
definitionDH863815|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F01, 5' end.DH863816|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(77,413,491 - 77,414,454)
sequence
gaattctcacctgaggaatacaaatggctgagaagcacctgaaaaaatgt
tcagcattcttaatcatcagggaaatgcaaatcaaagcaaccctgagatt
ctacttcacaccagtcagaatggctaagaccaaaaacttaggtgacagca
gatgctggggaggatgtggagaaagaggaacagtcctccattgttggtgg
gattgcaaacttgtacaaccactctggaaattagtctggcagttcctcag
aaaattggacatagtactaccggaggatccagcaatacctctcttgggca
tatatccagaagatgttccaaccagtaagaaggacacatgctccactatg
ttcatagcagtcttatttataatagccagaagctggaaagaacccagatg
tccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagagtgaatttacgaaatccataggcaaa
tgtttgcacctgaagggcatcatcctgagtgaggtaacccaatcacaaaa
gaactcacatgatatgtactcactgataagtgggat
gaattccataccatattttacagaacactttgagagaagaggcactttga
tattgttacactaaactttgaagatatagtaacatgatttaaccaaaata
ttctgtacttaaattgagaaaacatttgtacagtatagattgtaaagata
ataaataaggaaaagttttagacaaaaatatgtatgcacagatttgggat
ggtattttagaagataatgaggggaatactttatcaggtagaatacatgg
ctttggtgattagaaacatacaaaaaatacaatgatgaacttctcaaaca
gaatttgaaccagtatctgagaccataaactctcattttgttgtatctat
gccagctgattattttaaaaactgctcatataaaaataatgacatatttc
aaacatctacagaggtgatactattttccttagcattttagataactctt
taatcaaagccatgattttgtctaattcatgtttccacagcggtaaacaa
agaaaacatttgaatctgctagtatatgtagggaaccatagatcttattg
tgtactggaaagagttattatatgttgaccattattaagtctgcaagact
agtaaattgtgaaatgatattgactaaaaccccagaaaataataaatgaa
acccagtaggaaaatggtgattaaagtaatataaacctttcccaaattaa
aaaaaacaaaaaaaggggaattttttgttcctggcctgttcatttttgtt
aaaaacaaaatgtttatacagtaagaatatgattttcactgtctcatttt
ccccaaatcctgcccatgtaccatgccaaaactctaagatttttcctgtc
tagtcgaaactaaccgaatcctaaatctattaaacaaactacaatgaaaa
aattcaaagattagcctataaaacttaactttgcagaggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-035F01.b_30_499 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||| |||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      ||||||||| |||||||||| ||||||||||||||||||||||||| |||
seq2  ATAAATAAGACTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACTGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||  |||||||||||||||||||||  ||||||||||||||||||||||
seq2  TGGAACATCTTCTGGATATATGCCCAAGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||| |||||||  |||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACTGCCAGACTAATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||  |||||||||||||||||||||||| ||||||||||||
seq2  GGTTGTACAAGTTTGCAATCCCACCAACAATGGAGGACTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||| ||||||||||||||||||| | |||||| |||||||||
seq2  TCCACATCCTCCCCAGCATCTGCTGTCACCTAAGTTTTTGGTCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||| || |||||||||||||| ||||||||||||||||
seq2  TTCTGACTGGTGTGAAGTAGAATCTCAGGGTTGCTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      |||||||||||| ||| |||||||||||||||||||||||| ||||||  
seq2  CTGATGATTAAGAATGCTGAACATTTTTTCAGGTGCTTCTCAGCCATT-T  449

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  470

seq1: chr3_77413491_77414454
seq2: B6Ng01-035F01.g_67_1008 (reverse)

seq1  GCACCTCTGCATATGTTTATGTTTTATATGCTTATTCTTTGTATTTTTTT  50
      ||||||||||| |   ||| |||||||| || || |||||| ||||||| 
seq2  GCACCTCTGCAAA--GTTAAGTTTTATAGGC-TAATCTTTGAATTTTTTC  47

seq1  CTATTTGTTTGTTTTGTTTTATTATGATTTATGTATTTCTGTTTGTTTTC  100
       |  | |||||      |||| || |||||| |   ||| ||| | ||||
seq2  ATTGTAGTTTG------TTTAATA-GATTTAGG--ATTCGGTTAG-TTTC  87

seq1  GACATAGACAGAAAAATACTTAGAGTGTGTGCATGGTAACATGGGCAGGA  150
      ||| ||||||| ||||  |||||||| |  ||||||| ||||||||||||
seq2  GAC-TAGACAGGAAAAATCTTAGAGTTTTGGCATGGT-ACATGGGCAGGA  135

seq1  TTTGGGAGAAAATGAGACAGTGAAAAATCATCATCCTACTGTATAAACAT  200
      |||||| ||||||||||||||| ||||||||  || ||||||||||||||
seq2  TTTGGG-GAAAATGAGACAGTG-AAAATCATATTCTTACTGTATAAACAT  183

seq1  TTTGTTTTTAACAAAAAATAGAACAGGACAGGAACAAAAAATTACACTAT  250
      |||||||||||||||||   ||||||| ||||||||||||||| | |  |
seq2  TTTGTTTTTAACAAAAA--TGAACAGGCCAGGAACAAAAAATTCCCC--T  229

seq1  TTTTTTGTATCTTATAAATTTGGGAAAGGTATCATATTACTTTAATCACC  300
      |||||||| | || | |||||||||||||| | |||||||||||||||||
seq2  TTTTTTGT-TTTTTTTAATTTGGGAAAGGT-TTATATTACTTTAATCACC  277

seq1  AATTTCCTACTGGGTTTCATTTATTATTTTCT-GGGTTTTAGTCAATATC  349
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTTTCCTACTGGGTTTCATTTATTATTTTCTGGGGTTTTAGTCAATATC  327

seq1  ATTTCACAATTTACTAGTCTTGCAGACTTAATAATGGTCAACATATAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACAATTTACTAGTCTTGCAGACTTAATAATGGTCAACATATAATA  377

seq1  ACTCTTTCCAGTACACAATAAGATCTATGGTTCCCTACATATACTAGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCCAGTACACAATAAGATCTATGGTTCCCTACATATACTAGCAG  427

seq1  ATTCAAATGTTTTCTTTGTTTACCGCTGTGGAAACATGAATTAGACAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATGTTTTCTTTGTTTACCGCTGTGGAAACATGAATTAGACAAAA  477

seq1  TCATGGCTTTGATTAAAGAGTTATCTAAAATGCTAAGGAAAATAGTATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTTTGATTAAAGAGTTATCTAAAATGCTAAGGAAAATAGTATCA  527

seq1  CCTCTGTAGATGTTTGAAATATGTCATTATTTTTATATGAGCAGTTTTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTAGATGTTTGAAATATGTCATTATTTTTATATGAGCAGTTTTTA  577

seq1  AAATAATCAGCTGGCATAGATACAACAAAATGAGAGTTTATGGTCTCAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCAGCTGGCATAGATACAACAAAATGAGAGTTTATGGTCTCAGA  627

seq1  TACTGGTTCAAATTCTGTTTGAGAAGTTCATCATTGTATTTTTTGTATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTCAAATTCTGTTTGAGAAGTTCATCATTGTATTTTTTGTATGT  677

seq1  TTCTAATCACCAAAGCCATGTATTCTACCTGATAAAGTATTCCCCTCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCACCAAAGCCATGTATTCTACCTGATAAAGTATTCCCCTCATT  727

seq1  ATCTTCTAAAATACCATCCCAAATCTGTGCATACATATTTTTGTCTAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTAAAATACCATCCCAAATCTGTGCATACATATTTTTGTCTAAAA  777

seq1  CTTTTCCTTATTTATTATCTTTACAATCTATACTGTACAAATGTTTTCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTATTTATTATCTTTACAATCTATACTGTACAAATGTTTTCTC  827

seq1  AATTTAAGTACAGAATATTTTGGTTAAATCATGTTACTATATCTTCAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGTACAGAATATTTTGGTTAAATCATGTTACTATATCTTCAAAG  877

seq1  TTTAGTGTAACAATATCAAAGTGCCTCTTCTCTCAAAGTGTTCTGTAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTAACAATATCAAAGTGCCTCTTCTCTCAAAGTGTTCTGTAAAA  927

seq1  TATGGTATGGAATTC  964
      |||||||||||||||
seq2  TATGGTATGGAATTC  942