BAC Information

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BAC

Clone NameB6Ng01-035F05
Chromosome10 (Build37)4 (Build37)
Map Location 104,053,903 - 104,054,363144,335,411 - 144,336,351
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035F05.bB6Ng01-035F05.g
ACCDH863821DH863822
length719926
definitionDH863821|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F05, 5' end.DH863822|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(144,335,411 - 144,336,351)
sequence
gaattctcacgtgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcagaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaggcttttacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactacctgaggatccagcagcacctctcctgggc
atatatcctgaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttatcatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gtgtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacgcaatatatacttactgataagtggatattagcccaaatcc
taggatacccaagatataagataccatttgctaagcacatgaaactcaag
aacaatgaagactgaagtggtggacacttatgcccctccttagaattggg
aacaaaacacccatgtagg
gaattcacagatatttatgtcctcatgacctttttgcacatgtatgaaga
ggtgagaaatgggggaacaaattcaagtaagctaagtggtttcagcatct
gcacacccacaccacactctcctatgcctcacttttttcctttgcctatg
acagggcaacatactagagaaactgagaatttgtgccatgcccaggtttt
tacagttttccccaggtccaatcctgataaagatcctaatgtgtttgtga
ctgatatgccctttaggacagttcctgtgaggctgtctaagcccaaagaa
gtatcttccaaatataggcagagcatcatcttctactgtcaaggaggtga
agtggctggcagcctggataaggagcttcatgtgtggtgaggaggaaggt
cctcagaaaaggtaggaccttgcacttgttcatatgatgacttatctaga
gggagataaatcagtaaaaattggagattcttaaagaaactagggtttga
ttcagtgggccatagtttctatagtagttttttctatgttggggcatcta
aatcagcagagggttttctttggcactgaatttggtcgcattcttttctt
cccagctataacactggctatttctgtctttttacacacttttcagattc
atgcactttcctccatttagctggcaaaagtggagaaaagtccattcatt
tacccacttcgttgctgaacccaaattactatgctggcattgttgtcatc
ttttgctttagtggttctcttccaccaggaggattttgtacaggtatact
tcaagagcttgtcactactacatgaaaccttcttcggacacttgaggctt
tcctaatattgcaccaatttctcctaccttcaatggcttagccacgattt
cctgattgcgagaagatgttatcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-035F05.b_45_515 (reverse)

seq1  TTTAATAGCT----------CCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||||          |||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACACCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATG  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||||||||||| |||||||||||||| ||||||  |||||||||||| |
seq2  TGGGGCATCTTCAGGATATATGCCCAGGAGAGGTGCTGCTGGATCCTCAG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  GGTTGTAAAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCCCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||| |||| |||||||||||| |||||| ||||||||||||||
seq2  TTCTGACTGGAGTGAAGTGGAATCTCAGTGTTGTTCTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||| ||||||||||
seq2  GTATTCCTCACGTGAGAATTC  471

seq1: chr4_144335411_144336351
seq2: B6Ng01-035F05.g_68_993 (reverse)

seq1  CAAGATAACATCTCTCTCTGCAATTCAGAGAAGATCAGTGGCTATAGCAT  50
      ||||||||||||| |||| |||| |||| ||| ||| ||||||| |||  
seq2  CAAGATAACATCT-TCTC-GCAA-TCAG-GAA-ATC-GTGGCTA-AGCCA  43

seq1  ATGAAGGGTAGGAAGAAATATAGGTGACAATATTAGGAAGGCCATCCAGA  100
       |||| |||||| ||||  || |||| |||||||||||| ||| || || 
seq2  TTGAA-GGTAGG-AGAA--ATTGGTG-CAATATTAGGAAAGCC-TCAAG-  86

seq1  TGTACAGAAGAAGGTTTCATGTAGTAGTGACAAGCTC-TGAAGTATACCT  149
      ||| | ||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGT-CCGAAGAAGGTTTCATGTAGTAGTGACAAGCTCTTGAAGTATACCT  135

seq1  GTAC-AGATTCTTCTGGTGGGAAGAGAA-CACTAAAGCAAAAGATGACAA  197
      |||| | || || ||||| ||||||||| |||||||||||||||||||||
seq2  GTACAAAATCCTCCTGGT-GGAAGAGAACCACTAAAGCAAAAGATGACAA  184

seq1  GCAATGCCAGCATAGTAATTTGGGTTCAGCAACGAAGTGGGTAAAATGAA  247
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  -CAATGCCAGCATAGTAATTTGGGTTCAGCAACGAAGTGGGT-AAATGAA  232

seq1  TGGACTTTTCTCCACTTTTTGCCAGCTAAATGGAGGAAAGTGCATGAATC  297
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGACTTTTCTCCAC-TTTTGCCAGCTAAATGGAGGAAAGTGCATGAATC  281

seq1  TG-AAAGTGTTGTAAAAAGACAGAAATAGCCAGTGTTATAGCTGGGAAGA  346
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTG-TGTAAAAAGACAGAAATAGCCAGTGTTATAGCTGGGAAGA  330

seq1  AAAGAATGCGACCAAATTCAGTGCC-AAGAAAACCCTCTGCTGATTTAGA  395
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAGAATGCGACCAAATTCAGTGCCAAAGAAAACCCTCTGCTGATTTAGA  380

seq1  TGCCCCAACATAGAAAAAACTACTATAGAAACTATGGCCCACTGAATCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAACATAGAAAAAACTACTATAGAAACTATGGCCCACTGAATCAA  430

seq1  ACCCTAGTTTCTTTAAGAATCTCCAATTTTTACTGATTTATCTCCCTCTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGTTTCTTTAAGAATCTCCAATTTTTACTGATTTATCTCCCTCTA  480

seq1  GATAAGTCATCATATGAACAAGTGCAAGGTCCTACCTTTTCTGAGGACCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTCATCATATGAACAAGTGCAAGGTCCTACCTTTTCTGAGGACCT  530

seq1  TCCTCCTCACCACACATGAAGCTCCTTATCCAGGCTGCCAGCCACTTCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCACCACACATGAAGCTCCTTATCCAGGCTGCCAGCCACTTCAC  580

seq1  CTCCTTGACAGTAGAAGATGATGCTCTGCCTATATTTGGAAGATACTTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGACAGTAGAAGATGATGCTCTGCCTATATTTGGAAGATACTTCT  630

seq1  TTGGGCTTAGACAGCCTCACAGGAACTGTCCTAAAGGGCATATCAGTCAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTTAGACAGCCTCACAGGAACTGTCCTAAAGGGCATATCAGTCAC  680

seq1  AAACACATTAGGATCTTTATCAGGATTGGACCTGGGGAAAACTGTAAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTAGGATCTTTATCAGGATTGGACCTGGGGAAAACTGTAAAAA  730

seq1  CCTGGGCATGGCACAAATTCTCAGTTTCTCTAGTATGTTGCCCTGTCATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCATGGCACAAATTCTCAGTTTCTCTAGTATGTTGCCCTGTCATA  780

seq1  GGCAAAGGAAAAAAGTGAGGCATAGGAGAGTGTGGTGTGGGTGTGCAGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGAAAAAAGTGAGGCATAGGAGAGTGTGGTGTGGGTGTGCAGAT  830

seq1  GCTGAAACCACTTAGCTTACTTGAATTTGTTCCCCCATTTCTCACCTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACCACTTAGCTTACTTGAATTTGTTCCCCCATTTCTCACCTCTT  880

seq1  CATACATGTGCAAAAAGGTCATGAGGACATAAATATCTGTGAATTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTGCAAAAAGGTCATGAGGACATAAATATCTGTGAATTC  926