BAC Information

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BAC

Clone NameB6Ng01-035G03
Chromosome1 (Build37)10 (Build37)
Map Location 113,881,937 - 113,882,981104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247
Downstream geneEG626897, LOC666615, LOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035G03.bB6Ng01-035G03.g
ACCDH863863DH863864
length1,006668
definitionDH863863|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G03, 5' end.DH863864|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,881,937 - 113,882,981)(104,053,903 - 104,054,363)
sequence
gaattcatatactattatataatatgttaataatatatatacaaacatac
attgtagtcatatacccattttgcctttgtcaaataaaattctgagtgaa
ttttattaaataggttcaaggtagacaaaaattcttgtattttacaaatc
actaattcagtgagcataatgaatttccttacattcagagtaatacagat
atacatatagtcagtactaacagacatagttatgacacaagccttgaaat
tttccatatccaagttcagtgtcaatcaatatatattgctatttacatgc
aatttgagaatcagtttccttgttttccatgccacattctaaatatatta
tcttaaaactgcaccaacatgagtaaatttttaagtaatcccctctcttg
tgttagtcatagagacatgtttccaccaataaaaaccaaacaaaattctc
cccaagggcactgtaaagtgggaggtttgcaatgattctgttccccccct
tttttttcctagtctcatttcattgtatctgcttacaaataagtaaagct
ttctaatatgacacatacttcttcacacattgttctctctgtgcagttga
taatccttcaagattttgaaatgttaaattgtagcatatagaattgttca
aaataacagggtttgtttcgttttcatacattccttttactgatttgttt
ttattttatgagtgctttatttgtatatatgaagatgcaccatgcattaa
atagaacctcatatcacttgtaagttacagattggtgtgagatagcaaat
ggatacttggaactgaactcacatctctttaccattaacaaatgatattc
actaataagctttctcaactcaattatacatcttgtataaagtaaccact
accatgctatcacatccctttctctgctctgtctcactcctacaattttt
ttcagtttatggcttgttatttgctcctatcttatatgagaatgagctat
ttactt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgttggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcgggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattgaacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gggtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagcccccaatc
ctaggatacccaagatataagatataatttgctaaacacatgaaaactca
agaagaatgaagaactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113881937_113882981
seq2: B6Ng01-035G03.b_44_1049 (reverse)

seq1  AAGTAAAATAGCTCATATTTTCTCTCATATATAGAGGATAGGGAGCAAAA  50
      |||| |||||||||||      ||||||||    | |||| |||||||| 
seq2  AAGT-AAATAGCTCAT------TCTCATAT----AAGATA-GGAGCAAAT  38

seq1  ATTAAAACAGAAGCCATTAAAACTGAAAAAAAAATGGTTAGGGAAGTGGA  100
      |       | |||||||  ||||||  |||||||| | ||||  ||| ||
seq2  A-------ACAAGCCAT--AAACTG--AAAAAAATTG-TAGG--AGT-GA  73

seq1  GACAGAGCAAGAGAAAAGGGATGTGGATAAGCATGGGTAAGGTGGGTGTA  150
      |||||||| |||| |||||||||| ||| ||||| ||||  ||||   ||
seq2  GACAGAGC-AGAG-AAAGGGATGT-GAT-AGCAT-GGTA--GTGG--TTA  114

seq1  CTTTATAC-AGATGTATAATGGAGGTTGGAGAAAAGCTTATTAGTGAATA  199
      |||||||| ||||||||||| |||  | ||| ||||||||||||||||||
seq2  CTTTATACAAGATGTATAATTGAG--TTGAG-AAAGCTTATTAGTGAATA  161

seq1  TCATTTGTTAATGGTAAAGAGGATGTGAGTTCAGTTCCAAGTATCCATTT  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCATTTGTTAATGGTAAAGA-GATGTGAGTTCAGTTCCAAGTATCCATTT  210

seq1  GCTATCTCACACCAATCTGTAACTTACAAGTGATATGAGGTTCTATTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTCACACCAATCTGTAACTTACAAGTGATATGAGGTTCTATTTAA  260

seq1  TGCATGGTGCATCTTCATATATACAAATAAAGCACTCATAAAATAAAAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGTGCATCTTCATATATACAAATAAAGCACTCATAAAATAAAAAC  310

seq1  AAATCAGTAAAAGGAATGTATGAAAACGAAACAAACCCTGTTATTTTGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTAAAAGGAATGTATGAAAACGAAACAAACCCTGTTATTTTGAA  360

seq1  CAATTCTATATGCTACAATTTAACATTTCAAAATCTTGAAGGATTATCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTATATGCTACAATTTAACATTTCAAAATCTTGAAGGATTATCAA  410

seq1  CTGCACAGAGAGAACAATGTGTGAAGAAGTATGTGTCATATTAGAAAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGAGAGAACAATGTGTGAAGAAGTATGTGTCATATTAGAAAGCT  460

seq1  TTACTTATTTGTAAGCAGATACAATGAAATGAGACTAGGAAAAAAAAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATTTGTAAGCAGATACAATGAAATGAGACTAGGAAAAAAAAGGG  510

seq1  GGGGAACAGAATCATTGCAAACCTCCCACTTTACAGTGCCCTTGGGGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACAGAATCATTGCAAACCTCCCACTTTACAGTGCCCTTGGGGAGA  560

seq1  ATTTTGTTTGGTTTTTATTGGTGGAAACATGTCTCTATGACTAACACAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTGGTTTTTATTGGTGGAAACATGTCTCTATGACTAACACAAG  610

seq1  AGAGGGGATTACTTAAAAATTTACTCATGTTGGTGCAGTTTTAAGATAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGATTACTTAAAAATTTACTCATGTTGGTGCAGTTTTAAGATAAT  660

seq1  ATATTTAGAATGTGGCATGGAAAACAAGGAAACTGATTCTCAAATTGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGAATGTGGCATGGAAAACAAGGAAACTGATTCTCAAATTGCAT  710

seq1  GTAAATAGCAATATATATTGATTGACACTGAACTTGGATATGGAAAATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAGCAATATATATTGATTGACACTGAACTTGGATATGGAAAATTT  760

seq1  CAAGGCTTGTGTCATAACTATGTCTGTTAGTACTGACTATATGTATATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTGTGTCATAACTATGTCTGTTAGTACTGACTATATGTATATCT  810

seq1  GTATTACTCTGAATGTAAGGAAATTCATTATGCTCACTGAATTAGTGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACTCTGAATGTAAGGAAATTCATTATGCTCACTGAATTAGTGATT  860

seq1  TGTAAAATACAAGAATTTTTGTCTACCTTGAACCTATTTAATAAAATTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATACAAGAATTTTTGTCTACCTTGAACCTATTTAATAAAATTCA  910

seq1  CTCAGAATTTTATTTGACAAAGGCAAAATGGGTATATGACTACAATGTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATTTTATTTGACAAAGGCAAAATGGGTATATGACTACAATGTAT  960

seq1  GTTTGTATATATATTATTAACATATTATATAATAGTATATGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATATATATTATTAACATATTATATAATAGTATATGAATTC  1006

seq1: chr10_104053903_104054363
seq2: B6Ng01-035G03.g_67_537 (reverse)

seq1  TTTAATAGCT----------CCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||||          |||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACCCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||| | |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGTTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||| ||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTTCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCCGCACTCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCGCCAACATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471