BAC Information

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BAC

Clone NameB6Ng01-035G11
ChromosomeX (Build37)10 (Build37)
Map Location 165,531,723 - 165,531,952104,053,903 - 104,054,411
singlet/doubletsingletsinglet
Overlap geneArhgap6
Upstream geneFrmpd4, EG667822, EG637566, Msl31
Downstream geneAmelx, Hccs, LOC100040950, BC022960, Mid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035G11.bB6Ng01-035G11.g
ACCDH863875DH863876
length230700
definitionDH863875|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G11, 5' end.DH863876|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(165,531,723 - 165,531,952)(104,053,903 - 104,054,411)
sequence
tcatccaaaggaaatcaaagaaggctgagttctatcaatattatctttga
ataacaagtttatttagtaataaaagtctatgtgtgagtgtgtgagtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattcagccattgagctg
tatggtctgtcagcctttgtgcatttatttttatctctctggaagattcc
aatgggacattttttctcctttaaagactc
gaattcaaaagttagactccagagaaacaaataaccctattaaaaatggg
gtacagagataaagaattctcaactgaggaatatcgaatggctgagaagc
acctaaaaaatgttcaacatccctagtcatcagggaaatgcaaatcaaaa
ctaccctgagattccacctcacaccagtcagaatggctaagatcaaaaac
tcaggtgacagcagatgctggtgaggatgtggagaaagaggaacactcct
ccattgctggtgggattgtaacctggcacaaccactctggaagtcagtct
ggaggttcctcagaaaattggacgtagtactactggaagatccagcaata
cctctcctgggcatatacccagaagatattccaactggtaattaggacac
atgctccactatgttcatagcagccttatttataatagccagaagatgga
aagaacccagatgtccctcaacagaggagtggatacaaaaaatgtagtac
atttacacaatggagtactactcagctattaaaaagaatatatttatgaa
attcctaggcaaatggatgaatctggatgatatcatcctgagtgaggtaa
cacaatcacaaaagaacacacatgatatgcactcactgataagtggataa
ttagcccagaagctcagaatagccaaagatacacttgactatccacatga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_165531723_165531952
seq2: B6Ng01-035G11.b_52_281

seq1  TCATCCAAAGGAAATCAAAGAAGGCTGAGTTCTATCAATATTATCTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAAAGGAAATCAAAGAAGGCTGAGTTCTATCAATATTATCTTTGA  50

seq1  ATAACAAGTTTATTTAGTAATAAAAGTCTATGTGTGAGTGTGTGAGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGTTTATTTAGTAATAAAAGTCTATGTGTGAGTGTGTGAGTGTG  100

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCAGCCATTGAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCAGCCATTGAGCTG  150

seq1  TATGGTCTGTCAGCCTTTGTGCATTTATTTTTATCTCTCTGGAAGATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCTGTCAGCCTTTGTGCATTTATTTTTATCTCTCTGGAAGATTCC  200

seq1  AATGGGACAATTTTTCTCCTTTAAAGACCC  230
      ||||||||| |||||||||||||||||| |
seq2  AATGGGACATTTTTTCTCCTTTAAAGACTC  230

seq1: chr10_104053903_104054411
seq2: B6Ng01-035G11.g_91_601 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||| ||||||| ||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACTACATTTTTTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || | |||||||||||||| ||||||||||||||||| || |||||||||
seq2  TCCACTCCTCTGTTGAGGGACATCTGGGTTCTTTCCATCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||  ||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTAATTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||   ||||||||| ||||||||||| ||||||||||||||||| ||| 
seq2  TGGAATATCTTCTGGGTATATGCCCAGGAGAGGTATTGCTGGATCTTCCA  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||||||||| |||||||||||||| ||||| |||||| || |||||||||
seq2  GTAGTACTACGTCCAATTTTCTGAGGAACCTCCAGACTGACTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||| | ||  | ||||||||||| |||||||||||||||||||||||
seq2  GGTTGTGCCAGGTTACAATCCCACCAGCAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TCCACATCCTCACCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTAGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||| || |||||||||||||||||| ||||||||||| ||||||||
seq2  CTGATGACTAGGGATGTTGAACATTTTTT-AGGTGCTTCTCAGCCATTCG  449

seq1  GTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAA  490
       |||||||||| ||||||||||||    |  ||||  ||||| |||||||
seq2  ATATTCCTCAGTTGAGAATTCTTT----ATCTCTGTACCCCA-TTTTTAA  494

seq1  TAGGGTTATTTGATTTTCT  509
      ||||||||||||  |||||
seq2  TAGGGTTATTTG--TTTCT  511