BAC Information

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BAC

Clone NameB6Ng01-035G18
Chromosome10 (Build37)
Map Location 86,572,012 - 86,704,138
singlet/doubletdoublet
Overlap gene1700113H08Rik
Upstream geneSyn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2
Downstream geneAscl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035G18.bB6Ng01-035G18.g
ACCDH863887DH863888
length984895
definitionDH863887|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G18, 5' end.DH863888|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,572,012 - 86,572,997)(86,703,215 - 86,704,138)
sequence
gaattcttgttatataattactcttcacttaaggtgactattgtgttctg
tccctcattaggaatatcttgtggtttgatttttggcatatttaatcctg
ttcaaaaccaaattaaactcctaaagcatatgctaccgtaaagcttaaat
cgcaggcttctgtgatatttcgcagaaaggttgtctggaaaaaggaaaac
tcaaagcaaagagcgaaatctactatctatgcctatcatgagtccgaggc
tggggtgatctttggaccatcactatgtaagcacagcaagggagtgcgtg
tcacattcaagggaatacaatgacgacatcacccatggcctcccctctta
ccagagttggctagatgaaagccttcttgcttgcctagaaaatcagacaa
taatagctctggttaattccatgctgtacaggaggtacatcaaaagtagg
aaatattgaagaataggctatcttgtggctctttctcattgatggcacat
ttgtggcctagatgaggctgtctgaagtacactaatttcaaggatttgac
cagaatctctaagaaaaggtatatttttccaaacatgagtacttcaacta
aaagcttcaatttccccttacattgttatttttacccccttttgatcttc
atgaaacttatctaagggtcttattaagctgtctaattctttcaacaaag
tagattgtttattgccaacttttgcattatgatgctttgggctatactag
ttcctagccatgttcttctctgtgtgagaagccaaacacacacaattttt
tatatgctgctgtgtggttgggatcacacaaggattatttgggtttcatt
atatttgtagccaccattacctgatctgcattatttcctattagtccttg
tataatttgggtttaatctttgggtaaggttgccttttctcgggttgttc
aatagttattcttaaatcaatattaacgtaatat
gaattcctgcttctattctatatctgccctgttttctaaattcatgatac
aaatttaatggtttaaaatccttcatgcttttcatcacagtcaagaggaa
atacaaactttgagcaaggtctcatggtcttcgcatctgccttcactagg
ttgcacaagttcatctctgcaagggctcaccctacttgggatctgtctga
agacacaagccttaagcaattgtcttcctctctagtgtcttggaccagcc
agggctcacactgacatactcttcttactctcttgatttctttggacctt
cctgaatacgtctatttttctctgttattctgcattgtgtgcctccctct
cactagcacaaatcataaggcaacaggcaatgtctttgttcaccatcctc
ctccctgttccactgacacattttcactgcgcataggatgttttctctgt
catgacataagtggttgagctcaggagtaggctgccttctttcaggtcta
gaaatcaggtctgggtggttctcaaccttcctaatgctgtgaccctttaa
tatagttcctcctgttgcagtgacccccaaccacaaattatcctgctgag
acttcataaatgtgattttgctactattatgaatcataatgatatgcagg
ttatctgatatgggacccctgtgggttggaaccaacagttgagaagcact
ggctcacagggactgagtacctgaacatgttgagaacccaacaaatgtgg
ttggaaagactttctatactaagagcagaaaacacccacaaagctggcac
agctgggggaagacaccacttctggtaagctgggttgaaaggactgatga
ccagatcttggcatggacaatgatagagtacctcccccatgcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_86572012_86572997
seq2: B6Ng01-035G18.b_43_1026

seq1  GAATTCTTGTTATATAATTACTCTTCACTTAAGGTGACTATTGTGTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTATATAATTACTCTTCACTTAAGGTGACTATTGTGTTCTG  50

seq1  TCCCTCATTAGGAATATCTTGTGGTTTGATTTTTGGCATATTTAATCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATTAGGAATATCTTGTGGTTTGATTTTTGGCATATTTAATCCTG  100

seq1  TTCAAAACCAAATTAAACTCCTAAAGCATATGCTACCGTAAAGCTTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACCAAATTAAACTCCTAAAGCATATGCTACCGTAAAGCTTAAAT  150

seq1  CGCAGGCTTCTGTGATATTTCGCAGAAAGGTTGTCTGGAAAAAGGAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGCTTCTGTGATATTTCGCAGAAAGGTTGTCTGGAAAAAGGAAAAC  200

seq1  TCAAAGCAAAGAGCGAAATCTACTATCTATGCCTATCATGAGTCCGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCAAAGAGCGAAATCTACTATCTATGCCTATCATGAGTCCGAGGC  250

seq1  TGGGGTGATCTTTGGACCATCACTATGTAAGCACAGCAAGGGAGTGCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGATCTTTGGACCATCACTATGTAAGCACAGCAAGGGAGTGCGTG  300

seq1  TCACATTCAAGGGAATACAATGACGACATCACCCATGGCCTCCCCTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTCAAGGGAATACAATGACGACATCACCCATGGCCTCCCCTCTTA  350

seq1  CCAGAGTTGGCTAGATGAAAGCCTTCTTGCTTGCCTAGAAAATCAGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTGGCTAGATGAAAGCCTTCTTGCTTGCCTAGAAAATCAGACAA  400

seq1  TAATAGCTCTGGTTAATTCCATGCTGTACAGGAGGTACATCAAAAGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTCTGGTTAATTCCATGCTGTACAGGAGGTACATCAAAAGTAGG  450

seq1  AAATATTGAAGAATAGGCTATCTTGTGGCTCTTTCTCATTGATGGCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGAAGAATAGGCTATCTTGTGGCTCTTTCTCATTGATGGCACAT  500

seq1  TTGTGGCCTAGATGAGGCTGTCTGAAGTACACTAATTTCAAGGATTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCTAGATGAGGCTGTCTGAAGTACACTAATTTCAAGGATTTGAC  550

seq1  CAGAATCTCTAAGAAAAGGTATATTTTTCCAAACATGAGTACTTCAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTCTAAGAAAAGGTATATTTTTCCAAACATGAGTACTTCAACTA  600

seq1  AAAGCTTCAATTTCCCCTTACATTGTTATTTTTACCCCCTTTTGATCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCAATTTCCCCTTACATTGTTATTTTTACCCCCTTTTGATCTTC  650

seq1  ATGAAACTTATCTAAGGGTCTTATTAAGCTGTCTAATTCTTTCAACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTTATCTAAGGGTCTTATTAAGCTGTCTAATTCTTTCAACAAAG  700

seq1  TAGATTGTTTATTGCCAAC-TTTGCATTATGATGCTTTGGGCTATACTAG  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGATTGTTTATTGCCAACTTTTGCATTATGATGCTTTGGGCTATACTAG  750

seq1  TTCCTAGCCATGTTCTTCTCTGTGTGAGAAGCCAAACACACACAA-TTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCCTAGCCATGTTCTTCTCTGTGTGAGAAGCCAAACACACACAATTTTT  800

seq1  TATATGCTGCTGTGTGGTTGGGATCACACAAGGATTATTT-GGTTTCATT  847
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATATGCTGCTGTGTGGTTGGGATCACACAAGGATTATTTGGGTTTCATT  850

seq1  ATATTTTGTAGCCACCATTACCTGATCTGCATTATTTCCTATTAGTCCTT  897
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATA-TTTGTAGCCACCATTACCTGATCTGCATTATTTCCTATTAGTCCTT  899

seq1  GTAT-ATTTGGGTTTAATCTTTGGGTAAGGTTGCCTTTTCCTCGGGTTGT  946
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTATAATTTGGGTTTAATCTTTGGGTAAGGTTGCCTTTT-CTCGGGTTGT  948

seq1  TCAAATAGTTTATTCTAAAACACAATATTAACAGTAATAT  986
      || ||||| ||||||| |||  |||||||||| |||||||
seq2  TC-AATAG-TTATTCTTAAA-TCAATATTAAC-GTAATAT  984

seq1: chr10_86703215_86704138
seq2: B6Ng01-035G18.g_67_961 (reverse)

seq1  GGTGCATGGGGGGAGGTTACTTCTATCATTTGTCCATGGCAAGATTCTGC  50
      ||||||| |||||||| ||| ||||||| ||||||||| ||||| |||| 
seq2  GGTGCAT-GGGGGAGG-TAC-TCTATCA-TTGTCCATGCCAAGA-TCTGG  45

seq1  TCATCCAAGTTCTTTCTCACCCCAGCCTTACCAG-AGTGGTGTCTTCCCC  99
      |||||  ||| |||  ||| ||||| |||||||| |||||||||||||||
seq2  TCATC--AGTCCTT--TCAACCCAG-CTTACCAGAAGTGGTGTCTTCCCC  90

seq1  CCAAGCTGCTGCCAGCTCTTTGTGGTGTTTTCTTGCTCTTAAGTATTAGA  149
      |  ||||| |||||||| | || ||||||||| ||||||| |||| ||||
seq2  C--AGCTG-TGCCAGCTTTGTG-GGTGTTTTC-TGCTCTT-AGTA-TAGA  133

seq1  AAGGTCTTTTCCAAAACCACATTTTGTTTGGGTTCTCAACATTGTTTCAA  199
      || |||||| |   ||||||||||   |||||||||||||| ||||   |
seq2  AA-GTCTTTCC---AACCACATTT--GTTGGGTTCTCAACA-TGTT--CA  174

seq1  GTTACTCAGTCCCTGTGAGCCAGTGCTTCTCAACCTGTTGGTTCCAACCC  249
      | ||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  GGTACTCAGTCCCTGTGAGCCAGTGCTTCTCAA-CTGTTGGTTCCAA-CC  222

seq1  CACAGGAGTCCCATATCAGATAACCTTGCATATCATTATGATTCATAATA  299
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  CACAGGGGTCCCATATCAGATAACC-TGCATATCATTATGATTCATAATA  271

seq1  GTAGCAAAATCACATTTATGAAGTCTCAGCAGGATAATTTTGTGGTTGGG  349
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTAGCAAAATCACATTTATGAAGTCTCAGCAGGATAA-TTTGTGGTTGGG  320

seq1  GGTCACTGCAACAGGAGGAACTATATTAAAGGGTCACAGCATTAGGAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGCAACAGGAGGAACTATATTAAAGGGTCACAGCATTAGGAAGG  370

seq1  TTGAGAACCACCCAGACCTGATTTCTAGACCTGAAAGAAGGCAGCCTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACCACCCAGACCTGATTTCTAGACCTGAAAGAAGGCAGCCTACT  420

seq1  CCTGAGCTCAACCACTTATGTCATGACAGAGAAAACATCCTATGCGCAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTCAACCACTTATGTCATGACAGAGAAAACATCCTATGCGCAGT  470

seq1  GAAAATGTGTCAGTGGAACAGGGAGGAGGATGGTGAACAAAGACATTGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGTCAGTGGAACAGGGAGGAGGATGGTGAACAAAGACATTGCC  520

seq1  TGTTGCCTTATGATTTGTGCTAGTGAGAGGGAGGCACACAATGCAGAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTTATGATTTGTGCTAGTGAGAGGGAGGCACACAATGCAGAATA  570

seq1  ACAGAGAAAAATAGACGTATTCAGGAAGGTCCAAAGAAATCAAGAGAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAAAATAGACGTATTCAGGAAGGTCCAAAGAAATCAAGAGAGTA  620

seq1  AGAAGAGTATGTCAGTGTGAGCCCTGGCTGGTCCAAGACACTAGAGAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTATGTCAGTGTGAGCCCTGGCTGGTCCAAGACACTAGAGAGGA  670

seq1  AGACAATTGCTTAAGGCTTGTGTCTTCAGACAGATCCCAAGTAGGGTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTGCTTAAGGCTTGTGTCTTCAGACAGATCCCAAGTAGGGTGAG  720

seq1  CCCTTGCAGAGATGAACTTGTGCAACCTAGTGAAGGCAGATGCGAAGACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCAGAGATGAACTTGTGCAACCTAGTGAAGGCAGATGCGAAGACC  770

seq1  ATGAGACCTTGCTCAAAGTTTGTATTTCCTCTTGACTGTGATGAAAAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACCTTGCTCAAAGTTTGTATTTCCTCTTGACTGTGATGAAAAGCA  820

seq1  TGAAGGATTTTAAACCATTAAATTTGTATCATGAATTTAGAAAACAGGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATTTTAAACCATTAAATTTGTATCATGAATTTAGAAAACAGGGC  870

seq1  AGATATAGAATAGAAGCAGGAATTC  924
      |||||||||||||||||||||||||
seq2  AGATATAGAATAGAAGCAGGAATTC  895