BAC Information

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BAC

Clone NameB6Ng01-036A03
Chromosome10 (Build37)
Map Location 34,475,014 - 34,605,309
singlet/doubletdoublet
Overlap genenone
Upstream geneEG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
Downstream geneLOC667824, LOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036A03.bB6Ng01-036A03.g
ACCDH864321DH864322
length1,049971
definitionDH864321|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A03, 5' end.DH864322|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,475,014 - 34,476,067)(34,604,301 - 34,605,309)
sequence
gaattctcaggaagggcttccctttaggtggtagtcatactgattagaag
tctttggcagcaagaagtcgctgctcttgagactgtgtgactttagaatg
ccttctgtttctggaaatgtacatggctatatctggcatgtaagcatact
tatgtttttagtacaaacagttacttttgcatacccatgatcacagaaat
atcaagaaacttactgaactttattcaagataattaatacattttcactg
caggatttttgtgattgagttgcttaaatttcctggaaggtggtggtgtt
aattcagcgtaagatttggcattgggtaagaaaaaaattcaaaaataaaa
ttaaagtcggaagggatttgggaagatggctcagtcattacaatacttgt
catacaagcactcatacctgagttaggattcccagcatgcggtggcatga
gcctgtgggcctggtactgggcagggagaaagagaagaatctctggaggc
tgttggccagctggtctgtcttatcaagtcatgagctccaggctcactga
aataataaggtggagaaggatgaaggaagatatcctacattcctttgacc
tctgtacaatgcacatacctgttcacatgcatgtgaatttgttcaggcct
ggagatacagaaacatgtatgccatacaccacacaccatatacaaataaa
gtaaaaggttaaaaatttaaaataacaaaatggaatgagcctgagtgtta
atttgaacaaaattgagacatcatggaaaagagcacagaggggacaaagg
tgtttaaatttgtctatataggtaaaataggcttgagttcaaagttaatt
ttcacttgaagagtactgattactttttatactcttgagagtaactgaac
ttttccaactatatttattatacaaaacctattacaataaatggaaaaat
agctgctttgtttgatgcttcttatcagttaggtgagaccattgatatag
tgacattcaatattattggagcttttattttgtgccaggtccctccaaa
gaattcttatttctcccctttcagaaactacttggaatacaagaattggt
cttcaaaacctgagaaaaaagacacaaaggaggaaacaatatgcacactg
gcatgaggtcagagctctagttatctctaacttcaaaagttttaaacttc
agtcctacaaagcaaaaagttcctgggagaccaaaccttagcagtctgaa
agcatttcatcaccaaatctgtcacagctgtttctggagttcttttgcac
tttttttttttattctgtggggacttttaacatttaggaactttatggtt
attttttcccacatcttctcattggttcacatcttgttctgctactgttt
atgcctgtgtcctctgaaatttttcaaattctttgggcctaaaaattagg
agaaattaatggtgccaatgtccttatgcttactgtgaagaaagcacaca
cacacacacacacacacacttcttctcttgcacatctcttccaggaacta
ctgcctattccagctgagatgtcaatcaaaccctatctctcaaggactac
cttgtaagccttcagagaattggtagtgagaatcttctaactctacgaga
agtctgttcctgggctcatagctgctcacagctctggctgaactagggct
actttcagatgttctgtttctacattaacattgggttgtcttaagactga
acttcaagcatcatgcagtagtttatactcaaaaagttgatattatagca
cctagtgtgcctgagctctcccactagacacaagcatgtcttctccaaga
actaatactaccctaggatgtcactgagaaagcaactaagtgcacacaga
ctgaaataaaatgacatgcacaagagtatgcatgaggaccatgctcagcc
catatgtagcagagatgctatgtgcatatgtgagggagccctggtctgtg
taggttgatgcccaggtaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_34475014_34476067
seq2: B6Ng01-036A03.b_47_1095

seq1  GAATTCTCAGGAAGGGCTTCCCTTTAGGTGGTAGTCATACTGATTAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGAAGGGCTTCCCTTTAGGTGGTAGTCATACTGATTAGAAG  50

seq1  TCTTTGGCAGCAAGAAGTCGCTGCTCTTGAGACTGTGTGACTTTAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCAGCAAGAAGTCGCTGCTCTTGAGACTGTGTGACTTTAGAATG  100

seq1  CCTTCTGTTTCTGGAAATGTACATGGCTATATCTGGCATGTAAGCATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTTTCTGGAAATGTACATGGCTATATCTGGCATGTAAGCATACT  150

seq1  TATGTTTTTAGTACAAACAGTTACTTTTGCATACCCATGATCACAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTAGTACAAACAGTTACTTTTGCATACCCATGATCACAGAAAT  200

seq1  ATCAAGAAACTTACTGAACTTTATTCAAGATAATTAATACATTTTCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAACTTACTGAACTTTATTCAAGATAATTAATACATTTTCACTG  250

seq1  CAGGATTTTTGTGATTGAGTTGCTTAAATTTCCTGGAAGGTGGTGGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTTTGTGATTGAGTTGCTTAAATTTCCTGGAAGGTGGTGGTGTT  300

seq1  AATTCAGCGTAAGATTTGGCATTGGGTAAGAAAAAAATTCAAAAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCGTAAGATTTGGCATTGGGTAAGAAAAAAATTCAAAAATAAAA  350

seq1  TTAAAGTCGGAAGGGATTTGGGAAGATGGCTCAGTCATTACAATACTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCGGAAGGGATTTGGGAAGATGGCTCAGTCATTACAATACTTGT  400

seq1  CATACAAGCACTCATACCTGAGTTAGGATTCCCAGCATGCGGTGGCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAGCACTCATACCTGAGTTAGGATTCCCAGCATGCGGTGGCATGA  450

seq1  GCCTGTGGGCCTGGTACTGGGCAGGGAGAAAGAGAAGAATCTCTGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGGCCTGGTACTGGGCAGGGAGAAAGAGAAGAATCTCTGGAGGC  500

seq1  TGTTGGCCAGCTGGTCTGTCTTATCAAGTCATGAGCTCCAGGCTCACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCCAGCTGGTCTGTCTTATCAAGTCATGAGCTCCAGGCTCACTGA  550

seq1  AATAATAAGGTGGAGAAGGATGAAGGAAGATATCCTACATTCCTTTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAGGTGGAGAAGGATGAAGGAAGATATCCTACATTCCTTTGACC  600

seq1  TCTGTACAATGCACATACCTGTTCACATGCATGTGAATTTGTTCAGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAATGCACATACCTGTTCACATGCATGTGAATTTGTTCAGGCCT  650

seq1  GGAGATACAGAAACATGTATGCCATACACCACACACCATATACAAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATACAGAAACATGTATGCCATACACCACACACCATATACAAATAAA  700

seq1  GTAAAAGGTTAAAAATTTAAAATAACAAAATGGAATGAGCCTGAGTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGGTTAAAAATTTAAAATAACAAAATGGAATGAGCCTGAGTGTTA  750

seq1  ATTTGAACAAAATTGAGACATCATGGAAAAGAGCACAGAGGGGACAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACAAAATTGAGACATCATGGAAAAGAGCACAGAGGGGACAAAGG  800

seq1  TGTTTAAATTTGTCTATAATAGGTAAAATAGGCTTGAGTTCAAAGTTAAT  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTTTAAATTTGTCTAT-ATAGGTAAAATAGGCTTGAGTTCAAAGTTAAT  849

seq1  TTTCACTTGAAGAGTACTGATAAC-TTTTATACTC-TGAGAGTAACTGAA  898
      ||||||||||||||||||||| || |||||||||| ||||||||||||||
seq2  TTTCACTTGAAGAGTACTGATTACTTTTTATACTCTTGAGAGTAACTGAA  899

seq1  CTTTTCCAAACTATATTTATTTATACAAATACCTATTACAATAAATGGAA  948
      ||||||| ||||||||||| ||||||||| |||||||||||||||||| |
seq2  CTTTTCC-AACTATATTTA-TTATACAAA-ACCTATTACAATAAATGG-A  945

seq1  AAAATAGCTGCTTTGTTTGATGCTTCTTATCAGTTAGAGTGAGACCAATG  998
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  AAAATAGCTGCTTTGTTTGATGCTTCTTATCAGTTAG-GTGAGACCATTG  994

seq1  ATTATAGTAACATTCAATATTATT-GAGCTTTTATTTTGTGCCAGGTCCC  1047
      | |||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  A-TATAGTGACATTCAATATTATTGGAGCTTTTATTTTGTGCCAGGTCCC  1043

seq1  ATCCAAA  1054
       ||||||
seq2  -TCCAAA  1049

seq1: chr10_34604301_34605309
seq2: B6Ng01-036A03.g_63_1033 (reverse)

seq1  CCCTACCCTGGGGCATCAAACCTACACAGGACCAAGGGCCTCCCCTCACA  50
      |||||||   ||||||| |||||||||| |||| |||||   ||||||||
seq2  CCCTACC--TGGGCATC-AACCTACACA-GACC-AGGGC--TCCCTCACA  43

seq1  CTAATGCCACATAAGGCCATCCTCTGCTACATATGGGGCTGGAGCCATGG  100
         ||| ||||||    ||| ||||||||||||| ||||| ||| ||| |
seq2  --TATG-CACATA---GCAT-CTCTGCTACATAT-GGGCT-GAG-CAT-G  82

seq1  GTCCCTCCATGCATACTCTTTGGTTGGCAATTGTCCATTTTTATTTCAGT  150
      ||||   |||||||||||||  ||  |||  ||||   ||||||||||||
seq2  GTCC--TCATGCATACTCTT--GT--GCA--TGTC--ATTTTATTTCAGT  122

seq1  CTTGTGTGCCACCTTAGTTGCTTTTCTCAGTGAACATTCCTAGGGTAGTA  200
      | |||||||   ||||||||| |||||||||| ||| |||||||||||||
seq2  C-TGTGTGC--ACTTAGTTGC-TTTCTCAGTG-ACA-TCCTAGGGTAGTA  166

seq1  TTAGTTCTTGGAGAAGACATGCTTGTGGTCTAGTGGGAGAGCTCAGGCAC  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAGTTCTTGGAGAAGACATGCTTGT-GTCTAGTGGGAGAGCTCAGGCAC  215

seq1  ACCTAGGTGCTATAATATCAACTTCTTTGAGTATAAACTAACTGCATGAT  300
      | |||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  A-CTAGGTGCTATAATATCAACTT-TTTGAGTATAAACT-ACTGCATGAT  262

seq1  GCTTGAAGTTCAGTCTTAAGACAACCCAATGTTAATGTAGAAACAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAGTTCAGTCTTAAGACAACCCAATGTTAATGTAGAAACAGAACA  312

seq1  TCTGAAAGTAGCCCTAGTTCAGCCAGAGCTGTGAGCAGCTATGAGCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGTAGCCCTAGTTCAGCCAGAGCTGTGAGCAGCTATGAGCCCAG  362

seq1  GAACAGACTTCTCGTAGAGTTAGAAGATTCTCACTACCAATTCTCTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACTTCTCGTAGAGTTAGAAGATTCTCACTACCAATTCTCTGAAG  412

seq1  GCTTACAAGGTAGTCCTTGAGAGATAGGGTTTGATTGACATCTCAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAAGGTAGTCCTTGAGAGATAGGGTTTGATTGACATCTCAGCTGG  462

seq1  AATAGGCAGTAGTTCCTGGAAGAGATGTGCAAGAGAAGAAGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCAGTAGTTCCTGGAAGAGATGTGCAAGAGAAGAAGTGTGTGTGT  512

seq1  GTGTGTGTGTGTGTGCTTTCTTCACAGTAAGCATAAGGACATTGGCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGCTTTCTTCACAGTAAGCATAAGGACATTGGCACCA  562

seq1  TTAATTTCTCCTAATTTTTAGGCCCAAAGAATTTGAAAAATTTCAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTCCTAATTTTTAGGCCCAAAGAATTTGAAAAATTTCAGAGGA  612

seq1  CACAGGCATAAACAGTAGCAGAACAAGATGTGAACCAATGAGAAGATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCATAAACAGTAGCAGAACAAGATGTGAACCAATGAGAAGATGTG  662

seq1  GGAAAAAATAACCATAAAGTTCCTAAATGTTAAAAGTCCCCACAGAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATAACCATAAAGTTCCTAAATGTTAAAAGTCCCCACAGAATAA  712

seq1  AAAAAAAAAGTGCAAAAGAACTCCAGAAACAGCTGTGACAGATTTGGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTGCAAAAGAACTCCAGAAACAGCTGTGACAGATTTGGTGA  762

seq1  TGAAATGCTTTCAGACTGCTAAGGTTTGGTCTCCCAGGAACTTTTTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCTTTCAGACTGCTAAGGTTTGGTCTCCCAGGAACTTTTTGCTT  812

seq1  TGTAGGACTGAAGTTTAAAACTTTTGAAGTTAGAGATAACTAGAGCTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGACTGAAGTTTAAAACTTTTGAAGTTAGAGATAACTAGAGCTCTG  862

seq1  ACCTCATGCCAGTGTGCATATTGTTTCCTCCTTTGTGTCTTTTTTCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATGCCAGTGTGCATATTGTTTCCTCCTTTGTGTCTTTTTTCTCAG  912

seq1  GTTTTGAAGACCAATTCTTGTATTCCAAGTAGTTTCTGAAAGGGGAGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAAGACCAATTCTTGTATTCCAAGTAGTTTCTGAAAGGGGAGAAA  962

seq1  TAAGAATTC  1009
      |||||||||
seq2  TAAGAATTC  971