BAC Information

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BAC

Clone NameB6Ng01-036D17
Chromosome4 (Build37)10 (Build37)
Map Location 73,994,834 - 73,995,982104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneJmjd2c
Upstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774
Downstream geneLOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036D17.bB6Ng01-036D17.g
ACCDH864475DH864476
length1,103686
definitionDH864475|Mus musculus domesticus DNA, BAC clone: B6Ng01-036D17, 5' end.DH864476|Mus musculus domesticus DNA, BAC clone: B6Ng01-036D17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,994,834 - 73,995,982)(104,053,903 - 104,054,363)
sequence
gaattcatcactgtgaactttagacagaacgtttgacaagaaatgattct
ccatttaaggaccagaattattgttttataaaattgcccttggaacttta
ctctaaacccatctttgattttcattccattaatctaccatgctttatac
attttctatttaaccatgctctgccaactttttggactgtgttcatcatt
ggtgatctcacagcagatattgcccagtttatgatcagcagtcactattg
tttagtagacagaacttatactctgagttaatataggcccggattttcaa
atattaatgtttgctaaacacttcattatgaatcagtgaattttgtggct
catatgtttgtggcgcaaatcttttatgttgacttcttgaggaattgtct
tcctacagtaatctttagattcaagagcaatggtgcaactcctttgacaa
agagactctgaaggagttcacgggaatccaataattcacctgaggtcaga
taatatatcagtgctggcctatgtatgacaaagcttcatttgtaattatt
tcttatgattgcttttactatcttgtgtaaaagtaagatttatgtattag
gaacacagactattactatagcatatttagctttggtttatacaatcata
tagtaaatgtaatttttctaatacttttttattgtaactaagctttttac
actttccttcccaatgtttactgagctctgagtagatttagatatgttct
taggactgaacacacaacctcacttattgtccacactctaatagctatga
gcatttgcactgactattagccaattcacaaagaagcttctcagaccaag
gttgagaactgtatcagtcaacggaaatgaccataaataattagaaattt
tgacagtatatcatttaaacaaaaccgagtggtagttcatagagatgtac
tcatgtcccaaccctagcatagcattgtcagctacagtactagacataat
gctttgtgagagttcaatcagtcagaaacatgcatacccacagtcctaac
ctactgcactgaaggtaattgatgtaacaaattttgatcagcattcaggc
tga
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaagttcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggataccccaagatataagatataatttgttaaacacatgaaattcaa
gaagaatgaagactgaagtgtggacactatgcccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_73994834_73995982
seq2: B6Ng01-036D17.b_48_1150

seq1  GAATTCATCACTGTGAACTTTAGACAGAACGTTTGACAAGAAATGATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACTGTGAACTTTAGACAGAACGTTTGACAAGAAATGATTCT  50

seq1  CCATTTAAGGACCAGAATTATTGTTTTATAAAATTGCCCTTGGAACTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAGGACCAGAATTATTGTTTTATAAAATTGCCCTTGGAACTTTA  100

seq1  CTCTAAACCCATCTTTGATTTTCATTCCATTAATCTACCATGCTTTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACCCATCTTTGATTTTCATTCCATTAATCTACCATGCTTTATAC  150

seq1  ATTTTCTATTTAACCATGCTCTGCCAACTTTTTGGACTGTGTTCATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTATTTAACCATGCTCTGCCAACTTTTTGGACTGTGTTCATCATT  200

seq1  GGTGATCTCACAGCAGATATTGCCCAGTTTATGATCAGCAGTCACTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCTCACAGCAGATATTGCCCAGTTTATGATCAGCAGTCACTATTG  250

seq1  TTTAGTAGACAGAACTTATACTCTGAGTTAATATAGGCCCGGATTTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAGACAGAACTTATACTCTGAGTTAATATAGGCCCGGATTTTCAA  300

seq1  ATATTAATGTTTGCTAAACACTTCATTATGAATCAGTGAATTTTGTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATGTTTGCTAAACACTTCATTATGAATCAGTGAATTTTGTGGCT  350

seq1  CATATGTTTGTGGCGCAAATCTTTTATGTTGACTTCTTGAGGAATTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTTGTGGCGCAAATCTTTTATGTTGACTTCTTGAGGAATTGTCT  400

seq1  TCCTACAGTAATCTTTAGATTCAAGAGCAATGGTGCAACTCCTTTGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGTAATCTTTAGATTCAAGAGCAATGGTGCAACTCCTTTGACAA  450

seq1  AGAGACTCTGAAGGAGTTCACGGGAATCCAATAATTCACCTGAGGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCTGAAGGAGTTCACGGGAATCCAATAATTCACCTGAGGTCAGA  500

seq1  TAATATATCAGTGCTGGCCTATGTATGACAAAGCTTCATTTGTAATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATCAGTGCTGGCCTATGTATGACAAAGCTTCATTTGTAATTATT  550

seq1  TCTTATGATTGCTTTTACTATCTTGTGTAAAAGTAAGATTTATGTATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGATTGCTTTTACTATCTTGTGTAAAAGTAAGATTTATGTATTAG  600

seq1  GAACACAGACTATTACTATAGCATATTTAGC-TTGGTTTATACAATCATA  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAACACAGACTATTACTATAGCATATTTAGCTTTGGTTTATACAATCATA  650

seq1  TAGTAAATGTAATTTTTCTAATACTTTTTTATTGTAACTAAGCTTTTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATGTAATTTTTCTAATACTTTTTTATTGTAACTAAGCTTTTTAC  700

seq1  ACTTTCCTTCCCAATGTTTACTGAGCTCTGAGTAGATTTAGATATGTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTTCCCAATGTTTACTGAGCTCTGAGTAGATTTAGATATGTTCT  750

seq1  TAGGACTGAACACACAACCTCACTTATTGTCCACACTCTAATAGCTATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTGAACACACAACCTCACTTATTGTCCACACTCTAATAGCTATGA  800

seq1  GCATTTGCACTGACTATTAGCCAATTCACAAAGAAGCTTCTCAGACCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCACTGACTATTAGCCAATTCACAAAGAAGCTTCTCAGACCAAG  850

seq1  GTTGAGAACTGTATCAGTCAACGGATATGACCATAAATATTTAGAAATTT  899
      ||||||||||||||||||||||||| ||||||||||||| ||||||| ||
seq2  GTTGAGAACTGTATCAGTCAACGGAAATGACCATAAATAATTAGAAA-TT  899

seq1  TTGACAGTATATCAATTTAAACAAAACCGGAGTGGTAGGTTTCATTAGAA  949
      ||||||||||||| |||||||||||||| |||||||||  |||| |||| 
seq2  TTGACAGTATATC-ATTTAAACAAAACC-GAGTGGTAG--TTCA-TAGA-  943

seq1  GGATTGTAACTCATTGTCCCCAACCCCTAGGCATTAGCATTTGTCCAGGC  999
       || ||| ||||| ||||||  | ||||| ||| ||||| |||| |||  
seq2  -GA-TGT-ACTCA-TGTCCC--AACCCTA-GCA-TAGCA-TTGT-CAG--  981

seq1  TTACAAGTACTAGACATAAATTGCTTTTGGTGGAAGAAGTCTCAAATCAA  1049
       ||| ||||||||||||||  ||||||  |||  |||  ||   |||| |
seq2  CTAC-AGTACTAGACATAA--TGCTTT--GTG--AGAGTTC---AATC-A  1020

seq1  GTCAGAAAACATGCCATTACTCCAACAGTCACTACACTACTGCACTGAGG  1099
      ||||| ||||||||    |  || |||||| |||  |||||||||||| |
seq2  GTCAG-AAACATGC----ATACCCACAGTC-CTAACCTACTGCACTGAAG  1064

seq1  TGTACATTTTGAATGATAACAATATTTTTGGATTCAGCATTCAAGGCTGA  1149
       ||| |||    ||| |||||| |||||  || ||||||||| |||||||
seq2  -GTA-ATT---GATG-TAACAA-ATTTT--GA-TCAGCATTC-AGGCTGA  1103

seq1: chr10_104053903_104054363
seq2: B6Ng01-036D17.g_69_539 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||||||||| |||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTAGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||||||||||||||| |||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAGTTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCACTCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAAGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471