BAC Information

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BAC

Clone NameB6Ng01-036H16
Chromosome7 (Build37)10 (Build37)
Map Location 80,340,991 - 80,341,27866,298,221 - 66,298,410
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMctp2, LOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243
Downstream gene4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036H16.bB6Ng01-036H16.g
ACCDH864644DH864645
length787190
definitionDH864644|Mus musculus domesticus DNA, BAC clone: B6Ng01-036H16, 5' end.DH864645|Mus musculus domesticus DNA, BAC clone: B6Ng01-036H16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,340,991 - 80,341,278)(66,298,221 - 66,298,410)
sequence
gaattccatgccagcacccatacagcagaaaactgactctgccatgttgt
tctatggcctccgtttacagccatggtacgtttctcccctgactcccaca
catatttttaaaaagtttaatacataaacttaaaaaaaaagataataatc
tgtcccaagtccctgtgcttgctaggcacgctctatgccactgagccaca
ttctcaggtcaactgtacattttgtcttttttcttttcttttcatgaatt
taattattttttttttaggtttttcgagacagggtttctctgtgtagctc
tggctggcctcgaactcagaaattcgcctgcctcttcctcccaagtgcta
ggagtaaaggcgtgtgccaccacgcccggctttaaaattattttttaatt
aaaaaatttttcatactatatattttttcacatttttctctcctctaact
cctctctgattctccttgcctccctaaccatccaattttatgtttcctct
ctctctttaaaaaacagaaacaaaacaaagcaaaacaacgccccctacac
aaaatgaaaatcaaaacaggcaaaaaaaaaaaaaaaaaaaagcccaaatg
aagcagtatgaaaaacaccactgaatccattttcatgtggcccaactgcc
tcaagccgtggggcttcccctgaagtgtggctaatatgcccagtgagact
ccactggagaacatggattttcccttgctagggggtatgcattacagtta
gcttcctgggtaggttggggagcccatgtcacttccc
acattctttgacttcccactgacccaaaacaatgtgcaaaaggtttgtat
ggcaaaggccgccatctgcccctcttgcctttccctgtagtctcactctg
gtgtgtactgttcctgaaagagacctgggtcttcctgtcacattcttgag
atcatgaaccgtatctgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_80340991_80341278
seq2: B6Ng01-036H16.b_139_419

seq1  ACACATATTTTTAAAAA----TATAGAAATAGTT------TGTTATATTT  40
      |||||||||||||||||     ||| | | | ||          ||| | 
seq2  ACACATATTTTTAAAAAGTTTAATACATAAACTTAAAAAAAAAGATAATA  50

seq1  ATTTGTATATACACACATCCATACTTTGCGTGC-ATACACGTGCATATGC  89
      || |||     | ||  |||   || ||| ||| |  ||||  | |||||
seq2  ATCTGT-----CCCAAGTCC---CTGTGCTTGCTAGGCACGCTC-TATGC  91

seq1  TAGAGTG-CACA----CATGT----TATAGAATTTAATTCTCACCTTTTT  130
       |  | | ||||    || ||    | || | |||   | |   ||||| 
seq2  CACTGAGCCACATTCTCAGGTCAACTGTACATTTTGTCTTTTTTCTTTTC  141

seq1  TGTT--TG--TTTGTTTGTTTTGTTTT---GTTTTTCGAAACAGGGTTTC  173
      | ||  ||  |||  || |||| ||||   ||||||||| ||||||||||
seq2  TTTTCATGAATTTAATTATTTTTTTTTTAGGTTTTTCGAGACAGGGTTTC  191

seq1  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTGGATCAAGCCTCGA  223
      |||||||||| |||||||                         |||||||
seq2  TCTGTGTAGCTCTGGCTG-------------------------GCCTCGA  216

seq1  ACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCGT  273
      |||||||||||| ||||||||| ||||||||||||| | | |||||||||
seq2  ACTCAGAAATTCGCCTGCCTCTTCCTCCCAAGTGCTAGGAGTAAAGGCGT  266

seq1  GTGCCACCATGCCCG  288
      ||||||||| |||||
seq2  GTGCCACCACGCCCG  281

seq1: chr10_66298221_66298410
seq2: B6Ng01-036H16.g_73_262

seq1  ACATTCTTTGACTTCCCACTGACCCAAAACAATGTGCAAAAGGTTTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTTGACTTCCCACTGACCCAAAACAATGTGCAAAAGGTTTGTAT  50

seq1  GGCAAAGGCCGCCATCTGCCCCTCTTGCCTTTCCCTGTAGTCTCACTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGCCGCCATCTGCCCCTCTTGCCTTTCCCTGTAGTCTCACTCTG  100

seq1  GTGTGTACTGTTCCTGAAAGAGACCTGGGTCTTCCTGTCACATTCTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACTGTTCCTGAAAGAGACCTGGGTCTTCCTGTCACATTCTTGAG  150

seq1  ATCATGAACCGTATCTGTGTGTGTGTGTGTGTGTGTGTGT  190
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAACCGTATCTGTGTGTGTGTGTGTGTGTGTGTGT  190