BAC Information

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BAC

Clone NameB6Ng01-036I16
Chromosome19 (Build37)10 (Build37)
Map Location 25,093,467 - 25,093,874104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneDock8
Upstream geneGm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1
Downstream geneLOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036I16.bB6Ng01-036I16.g
ACCDH864684DH864685
length402521
definitionDH864684|Mus musculus domesticus DNA, BAC clone: B6Ng01-036I16, 5' end.DH864685|Mus musculus domesticus DNA, BAC clone: B6Ng01-036I16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,093,467 - 25,093,874)(104,053,903 - 104,054,363)
sequence
tagttatagatgattgtgaggtgccgtgtgggttctagcaatcaaaccga
ggtcctctggaagagcagcccgtgttcttaagcactgagccatctctcca
gactcgggaagctaaatgtaaacataagaaaaccaaaataagtaccccat
tcctaagggaaatgctgtctatgaaagtgtcatgtctcagaatctcctac
gtagaagacagataagtagaacattatgacttgccgtgagaactcttagg
gctgtgaaagtaggagggggctgtgtgggaagaaaggaacaaagagaggg
ttacacaagaagagtgtattgggacaagaaagacaagtgttgcgtatttt
ctttcatgggaagaatataggtgtgtgtgtgtgtgtgtgagagagagaga
ga
gaattctcacttgaggaataccgaatgacagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
agattgcaggcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtatgaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacacagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggagggcatcatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25093467_25093874
seq2: B6Ng01-036I16.b_41_448 (reverse)

seq1  TCTCTCTCTCTCTCACACACACACACACACACCTATATTCTTCCCATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCACACACACACACACACACCTATATTCTTCCCATGAA  50

seq1  AGAAAATACGCAACACTTGTCTTTCTTGTCCCAATACACTCTTCTTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATACGCAACACTTGTCTTTCTTGTCCCAATACACTCTTCTTGTGT  100

seq1  AACCCTCTCTTTGTTCCTTTCTTCCCACACAGCCCCCTCCTACTTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTCTTTGTTCCTTTCTTCCCACACAGCCCCCTCCTACTTTCACA  150

seq1  GCCCTAAGAGTTCTCACGGCAAGTCATAATGTTCTACTTATCTGTCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAGAGTTCTCACGGCAAGTCATAATGTTCTACTTATCTGTCTTCT  200

seq1  ACGTAGGAGATTCTGAGACATGACACTTTCATAGACAGCATTTCCCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGGAGATTCTGAGACATGACACTTTCATAGACAGCATTTCCCTTAG  250

seq1  GAATGGGGTACTTATTTTGGTTTTCTTATGTTTACATTTAGCTTCCCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGGTACTTATTTTGGTTTTCTTATGTTTACATTTAGCTTCCCGAG  300

seq1  TCTGGAGAGATGGCTCAGTGCTTAAGAACACGGGCTGCTCTTCCAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAGATGGCTCAGTGCTTAAGAACACGGGCTGCTCTTCCAGAGGA  350

seq1  CCTCGGTTTGATTGCTAGAACCCACACGGCACCTCACAATCATCTATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTTTGATTGCTAGAACCCACACGGCACCTCACAATCATCTATAAC  400

seq1  TAGAATTC  408
      ||||||||
seq2  TAGAATTC  408

seq1: chr10_104053903_104054363
seq2: B6Ng01-036I16.g_68_538 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGTGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCATACCGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||| |||||||||||||||||||||| ||||||||||||||||||||| 
seq2  TGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCA  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||| ||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACTGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCTCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTCATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGTCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||| ||||||||||
seq2  GTATTCCTCAAGTGAGAATTC  471