BAC Information

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BAC

Clone NameB6Ng01-036N05
Chromosome10 (Build37)
Map Location 28,335,091 - 28,476,115
singlet/doubletdoublet
Overlap geneE430004N04Rik
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401, Ptprk
Downstream gene4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036N05.bB6Ng01-036N05.g
ACCDH864880DH864881
length942900
definitionDH864880|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N05, 5' end.DH864881|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,475,162 - 28,476,115)(28,335,091 - 28,335,881)
sequence
gaattcagaaacaactttgtgagaacataactcctgatgtcttctcaatc
cacacgggcctatctttttcaggacaggacagaatttccatagaacatcc
atgcctcagaatataactctaagttttgttggagggtcttcaaaatgcca
tagattgatggactttgggcactagaatcttaagttcatggacaataaga
gctagggttttcaggtagggatggctagttctgaaaactggggttcaggt
ctagcccagccctttcttcagtatgtgtgagaatggaaacccttggtgat
acattgtcctcttctaaaaagtaagggagacgatatcacctacgttataa
ggttattatgatacttaaactaaaacaggtagcattgttaacaaagaaac
agtggttactctttctcttgtatttttttcactctgtggttcaaagccat
tgaaggctgattgtaaggtcagatcttgtaatatcactagaagttcagtg
ccaactaaagcacactaaatttcccaggctgggtccaatagacaaaaaac
agaagctgccactcagcccctagcatagagagagcaaattttcccagtaa
taataatttccagactttaccagtgtttgaaaatagaagcaagcctcggg
tgacatgtttatgtggcccacctttggagaagtatttccaagttgcttac
agggatctgaacctatggtttgataaagggctggaaaatttacctaccat
aattttctgtcataaataggaatggtagagagcataaagatgtatgcaca
tttaaatgcacatgtgctacttgcagctattcacaggtatacattataca
cagtcacccagttgccctgaacaagatgccacaaatgtcaggtgtttttg
aaaacattatttatctgaaagtagttgagcataggggtggag
gaattcatttattttcagacatactccatccagagcagtgatatatgcag
ggctattactaggatgtctctttcttgagtacttatgtatccataaaata
tattttaactggtcattacatgtcatatacatgttattctggcaatatgt
tactgcttgttgtctttaacttatatatctgagacctatttgcattagat
atttgcatttttaaaatttctgtatgacattgcaatattatagtttattg
tatcatttttgaggtgaatgaatgcagtttcgcctcccatactattcttt
gtctgtgtcttgggtgctactctctgcccccctttactgctctgtctatc
attagacgacaacagcggtgatgacaatactagggtcaccttgctttctg
aaccacagttagattaagtcaatcaagagatcaccagcagggacactaaa
acttatagaggagaaagtgaggaaaagcttcaaagatatggacagagggg
aaaaatttctcaacagcaatggcttgtgctgtaagatcaagaatcaacaa
acgggacctcataaaattacaaagtttctgtaaggcaaaagatactgtca
ataagacaaaaaggccaccaacagattgggaaagatctttacaatcctaa
atccaatatccaatatatacaatataatatccaatatatataaagaactc
aagaacgtggactccagaaaatcaaataaactcattaaaaaatggggtac
agagctaagcaagaattctcaatggatgaataacgaatggttgagaagca
cctgaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaac
aaccctgagattccacctcacactgtcagatggctagatcaaatcagtga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28475162_28476115
seq2: B6Ng01-036N05.b_44_985 (reverse)

seq1  CTCCACCCCCTAATGGCTTCAACTACTTTTCAGAATAAAATATGTTTTCA  50
      |||||||||   |||   |||||||| |||||| |||||  |||||||||
seq2  CTCCACCCC--TATG--CTCAACTAC-TTTCAG-ATAAATAATGTTTTCA  44

seq1  AAAACACCTTGACATTTTGTGGCATCTTTTGTTCAGGGCAACTTGGGTGA  100
      |||||||| ||||| |||||||||||  |||||||||||||| |||||||
seq2  AAAACACC-TGACA-TTTGTGGCATC--TTGTTCAGGGCAAC-TGGGTGA  89

seq1  CTGTGTATAATGTATACCTTGTGAATAGCTGCAAGTAGCACATGTGCATT  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGTGTATAATGTATACC-TGTGAATAGCTGCAAGTAGCACATGTGCATT  138

seq1  TAAATGTGCATACATCTTTATGCTCTCTACCATTCCTATTTATGACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGCATACATCTTTATGCTCTCTACCATTCCTATTTATGACAGAA  188

seq1  AATTATGGTAGGTAAATTTTCCAGCCCTTTATCAAACCATAGGTTCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGTAGGTAAATTTTCCAGCCCTTTATCAAACCATAGGTTCAGAT  238

seq1  CCCTGTAAGCAACTTGGAAATACTTCTCCAAAGGTGGGCCACATAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAAGCAACTTGGAAATACTTCTCCAAAGGTGGGCCACATAAACAT  288

seq1  GTCACCCGAGGCTTGCTTCTATTTTCAAACACTGGTAAAGTCTGGAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCGAGGCTTGCTTCTATTTTCAAACACTGGTAAAGTCTGGAAATT  338

seq1  ATTATTACTGGGAAAATTTGCTCTCTCTATGCTAGGGGCTGAGTGGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACTGGGAAAATTTGCTCTCTCTATGCTAGGGGCTGAGTGGCAGC  388

seq1  TTCTGTTTTTTGTCTATTGGACCCAGCCTGGGAAATTTAGTGTGCTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTTTGTCTATTGGACCCAGCCTGGGAAATTTAGTGTGCTTTAG  438

seq1  TTGGCACTGAACTTCTAGTGATATTACAAGATCTGACCTTACAATCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACTGAACTTCTAGTGATATTACAAGATCTGACCTTACAATCAGCC  488

seq1  TTCAATGGCTTTGAACCACAGAGTGAAAAAAATACAAGAGAAAGAGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGCTTTGAACCACAGAGTGAAAAAAATACAAGAGAAAGAGTAAC  538

seq1  CACTGTTTCTTTGTTAACAATGCTACCTGTTTTAGTTTAAGTATCATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTCTTTGTTAACAATGCTACCTGTTTTAGTTTAAGTATCATAAT  588

seq1  AACCTTATAACGTAGGTGATATCGTCTCCCTTACTTTTTAGAAGAGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTATAACGTAGGTGATATCGTCTCCCTTACTTTTTAGAAGAGGACA  638

seq1  ATGTATCACCAAGGGTTTCCATTCTCACACATACTGAAGAAAGGGCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCACCAAGGGTTTCCATTCTCACACATACTGAAGAAAGGGCTGGG  688

seq1  CTAGACCTGAACCCCAGTTTTCAGAACTAGCCATCCCTACCTGAAAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCTGAACCCCAGTTTTCAGAACTAGCCATCCCTACCTGAAAACCC  738

seq1  TAGCTCTTATTGTCCATGAACTTAAGATTCTAGTGCCCAAAGTCCATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTATTGTCCATGAACTTAAGATTCTAGTGCCCAAAGTCCATCAA  788

seq1  TCTATGGCATTTTGAAGACCCTCCAACAAAACTTAGAGTTATATTCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGCATTTTGAAGACCCTCCAACAAAACTTAGAGTTATATTCTGAG  838

seq1  GCATGGATGTTCTATGGAAATTCTGTCCTGTCCTGAAAAAGATAGGCCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGATGTTCTATGGAAATTCTGTCCTGTCCTGAAAAAGATAGGCCCG  888

seq1  TGTGGATTGAGAAGACATCAGGAGTTATGTTCTCACAAAGTTGTTTCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTGAGAAGACATCAGGAGTTATGTTCTCACAAAGTTGTTTCTGA  938

seq1  ATTC  954
      ||||
seq2  ATTC  942

seq1: chr10_28335091_28335881
seq2: B6Ng01-036N05.g_68_856

seq1  GAATTCATTTATTTTCAGACATACTCCATCCAGAGCAGTGATATATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATTTTCAGACATACTCCATCCAGAGCAGTGATATATGCAG  50

seq1  GGCTATTACTAGGATGTCTCTTTCTTGAGTACTTATGTATCCATAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTACTAGGATGTCTCTTTCTTGAGTACTTATGTATCCATAAAATA  100

seq1  TATTTTAACTGGTCATTACATGTCATATACATGTTATTCTGGCAATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAACTGGTCATTACATGTCATATACATGTTATTCTGGCAATATGT  150

seq1  TACTGCTTGTTGTCTTTAACTTATATATCTGAGACCTATTTGCATTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTGTTGTCTTTAACTTATATATCTGAGACCTATTTGCATTAGAT  200

seq1  ATTTGCATTTTTAAAATTTCTGTATGACATTGCAATATTATAGTTTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTTTTAAAATTTCTGTATGACATTGCAATATTATAGTTTATTG  250

seq1  TATCATTTTTGAGGTGAATGAATGCAGTTTCGCCTCCCATACTATTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTTTGAGGTGAATGAATGCAGTTTCGCCTCCCATACTATTCTTT  300

seq1  GTCTGTGTCTTGGGTGCTACTCTCTGCCCCCCTTTACTGCTCTGTCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTCTTGGGTGCTACTCTCTGCCCCCCTTTACTGCTCTGTCTATC  350

seq1  ATTAGACGACAACAGCGGTGATGACAATACTAGGGTCACCTTGCTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACGACAACAGCGGTGATGACAATACTAGGGTCACCTTGCTTTCTG  400

seq1  AACCACAGTTAGATTAAGTCAATCAAGAGATCACCAGCAGGGACACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGTTAGATTAAGTCAATCAAGAGATCACCAGCAGGGACACTAAA  450

seq1  ACTTATAGAGGAGAAAGTGAGGAAAAGCTTCAAAGATATGGACAGAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAGAGGAGAAAGTGAGGAAAAGCTTCAAAGATATGGACAGAGGGG  500

seq1  AAAAATTTCTCAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTCTCAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCAACAA  550

seq1  ACGGGACCTCATAAAATTACAAAGTTTCTGTAAGGCAAAAGATACTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGACCTCATAAAATTACAAAGTTTCTGTAAGGCAAAAGATACTGTCA  600

seq1  ATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCAATCCT  650
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  ATAAGACAAAAAGGCCACCAACAGATTGGGAAA-GATCTTTA-CAATCCT  648

seq1  AAATCCAATATCCAATATATACAATATAATATCCAATATATATAAAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAATATCCAATATATACAATATAATATCCAATATATATAAAGAAC  698

seq1  TCAAGAAGGTGGACTCCAGAAAATCAAATAAACTCATTAAAAAATGGGGT  750
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAACGTGGACTCCAGAAAATCAAATAAACTCATTAAAAAATGGGGT  748

seq1  ACAGAGCTAAGCAAGAATTCTCAATGGATGAATAACGAATG  791
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTAAGCAAGAATTCTCAATGGATGAATAACGAATG  789