BAC Information

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BAC

Clone NameB6Ng01-036N11
Chromosome10 (Build37)
Map Location 33,870,046 - 33,871,123
singlet/doubletsinglet
Overlap genenone
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik
Downstream geneDse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036N11.bB6Ng01-036N11.g
ACCDH864890DH864891
length1,0901,053
definitionDH864890|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N11, 5' end.DH864891|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatagctgcacagtactccattgtgtaaatgtacc
acattttctgtatccattcctctgttgagggacatctgggctctttccag
cttcttgctatttattataaataaggctgctatgaacatagtggaacatg
tgtccttattataagttggagcatcttctgggtatatgcccaggagtggt
attgctggatcttcctgagtactatgtcaaattttctgtggaactgccag
actgatttccagagtggttgtaccagcttgtaatcccaccagcaatagag
gagtgatactctttctccacatcctctccagcatctgctgtcaactgagt
ttttaatcttagccattctaactagtgtgaggtgaaatctcagggctgtt
ttgatttgcattcccctgatgattaaggatgttgaacatttttttaaggt
gcttctcagccattcagtattcctcagttgagaattttttttttagctct
gtaccccattttttaatagggttaattggttttctggagtccaatttctt
gagttctttatacattatttgatattagccccttaccagatttacaattg
gtaaagatcttttcccaatctgttggttgctgtttgtcttattgacaatg
tcctttgccttacaaaagctttgcaattttatgatgtcccatttgtcaat
tcttgatcttatagcacaggccagtgctattctgtttcaggaatttttcc
cctgtacccatatcttctagactcttccccactttcttcttctgtaagtt
tcagtgtctcttgttttatgtggagttccttgattcacttagacttgagc
tttgtacaaggagataagattagaattcttctacatgataactggcaatt
gagcagcaccatttgtttaaaatgttgtctttttcattggatggtttcag
ctccttgtcaaagatcaggtgacatagtggtgtgggttcatttctgggtc
ttcggatgctattcatgatctggctgtcgtcgctgtacaataccatgaag
ttttaatcacaattgctcttagttacagctagaggcgggg
gaattccactatttactagaagtgggaaacccttaacatattttttttaa
aattacttcaaaaaaggaggtcatgttctggttaaagaggatcatgcaat
gatgattaatgcattatctagcctgaacctaattggttgctaatttaaaa
ggaaagctagatttggctcacacttggactttccatctttgctataaacc
atgctcatgttttggagttgaggtcaggttttcttcctttgtaacctcaa
agagcaaacttcccccaactccttaaaaaaaatatcccttccacacaatt
catctttctgaatgagaaagaagagaagagatggctgttgaatgaggtta
agtaaacggagaagctgtcacataaagcaagtttaaatctcagtaagagc
aaccgtgcaggacaaacggaagcattattctttggaaaacatcattattt
aaacagtgtgtaatgaaatcctccctggagacagcccctgtgagggacaa
gctacttgctcagaagtcagcttctaggcttcgagcataagaacggtagc
tctgcccaaagtcagacgtaagtttttccttgtgcaaaaatattcaaatt
agaaccatgagatggtactcacagggctttctcagggtttgaatctttga
tgcctactgctgtttctccgacataaaggcctaggcagaggcaagactgc
tactatgcttagctccataaatcagtgagcgtgcccttatttcaaaaatg
tatgctcaatccatttccatttcaagggagaaaatttatcagcctcaact
acacttctatgtaagatgatttatgctttcagtccaagtataacatttct
tctgcgcaagcagaaaactggtgggctgcatttcagcattttctgctgct
gttagcccctggaggacatgattgcactattacagaatctttactagcta
cagactttggttctgtgtactgaaatatgctagagagaaaatcaagagtg
aaatatgtttcaaaatcagtagttagtgatgctagtaaatgaagttctcc
tta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_33870046_33871123
seq2: B6Ng01-036N11.g_69_1121

seq1  GAATTCCACTATTCACTAGAAGTGGGAAACCCTTAACATATTTTTTTTAA  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTATTTACTAGAAGTGGGAAACCCTTAACATATTTTTTTTAA  50

seq1  AATTACTTCAAAAAAGGAGGTCATGTTCTGGTTAAAGAGGATCATGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTCAAAAAAGGAGGTCATGTTCTGGTTAAAGAGGATCATGCAAT  100

seq1  GATGATTAATGCATTATCTAGCCTGAACCTAATTGGTTGCTAATTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTAATGCATTATCTAGCCTGAACCTAATTGGTTGCTAATTTAAAA  150

seq1  GGAAAGCTAGATTTGGCTCACACTTGGACTTTCCATCTTTGCTATAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTAGATTTGGCTCACACTTGGACTTTCCATCTTTGCTATAAACC  200

seq1  ATGCTCATGTTTTGGAGTTGAGGTCAGGTTTTCTTCCTTTGTAACCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATGTTTTGGAGTTGAGGTCAGGTTTTCTTCCTTTGTAACCTCAA  250

seq1  AGAGCAAACTTCCCCCAACTCCTTAAAAAAAATATCCCTTCCACACAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAACTTCCCCCAACTCCTTAAAAAAAATATCCCTTCCACACAATT  300

seq1  CATCTTTCTGAATGAGAAAGAAGAGAAGAGATGGCTGTTGAATGAGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTGAATGAGAAAGAAGAGAAGAGATGGCTGTTGAATGAGGTTA  350

seq1  AGTAAACGGAGAAGCTGTCACATAAAGCAAGTTTAAATCTCAGTAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACGGAGAAGCTGTCACATAAAGCAAGTTTAAATCTCAGTAAGAGC  400

seq1  AACCGTGCAGGACAAACGGAAGCATTATTCTTTGGAAAACATCATTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTGCAGGACAAACGGAAGCATTATTCTTTGGAAAACATCATTATTT  450

seq1  AAACAGTGTGTAATGAAATCCTCCCTGGAGACAGCCCCTGTGAGGGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGTGTAATGAAATCCTCCCTGGAGACAGCCCCTGTGAGGGACAA  500

seq1  GCTACTTGCTCAGAAGTCAGCTTCTAGGCTTCGAGCATAAGAACGGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGCTCAGAAGTCAGCTTCTAGGCTTCGAGCATAAGAACGGTAGC  550

seq1  TCTGCCCAAAGTCAGACGTAAG-TTTTCCTTGTGC-AAAATATTCAAATT  598
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  TCTGCCCAAAGTCAGACGTAAGTTTTTCCTTGTGCAAAAATATTCAAATT  600

seq1  AGAACCATGAGATGGTACTCACAGGGCTTTCTCAGGGTTTGAATCTTTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCATGAGATGGTACTCACAGGGCTTTCTCAGGGTTTGAATCTTTGA  650

seq1  TGCCTACTGCTGTTTCTCCGAACATAAAGGCCTAGGCAGAGGCAAGACTG  698
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCCTACTGCTGTTTCTCCG-ACATAAAGGCCTAGGCAGAGGCAAGACTG  699

seq1  CTACTATGCTTAGCTCCATAAATCAGTGAGCGTGCCCTTATTCCAAAAAT  748
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTACTATGCTTAGCTCCATAAATCAGTGAGCGTGCCCTTATTTCAAAAAT  749

seq1  GTATGCTCAATCCATTTCCATTTTCAAGGGAG-AAATTTATCAGCCTCAA  797
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  GTATGCTCAATCCATTTCCA-TTTCAAGGGAGAAAATTTATCAGCCTCAA  798

seq1  CTACAC-TCTATGTAAGATGATTTATGCTTTCAGTCCAAGTATAACATTT  846
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  CTACACTTCTATGTAAGATGATTTATGCTTTCAGTCCAAGTATAACA-TT  847

seq1  TCTTCTGCGCAAGCAG-AAACT-GTGGGCTGCATTTCCAGCATTCTCTGC  894
      |||||||||||||||| ||||| ||||||||||||| ||||||| |||||
seq2  TCTTCTGCGCAAGCAGAAAACTGGTGGGCTGCATTT-CAGCATTTTCTGC  896

seq1  TGCTGTTAGCCCCT-GAGGACATGATTGCACCTAATTACAGAAATCTTTT  943
      |||||||||||||| ||||||||||||||||   ||||||| |||| |||
seq2  TGCTGTTAGCCCCTGGAGGACATGATTGCAC--TATTACAG-AATC-TTT  942

seq1  ACTTAGGCTAACCAGACTTTGGTTTCTGTGTTAACTGAAATATGCTTAGA  993
      |||   ||||  |||||||||| ||||||||  |||||||||||| ||||
seq2  ACT--AGCTA--CAGACTTTGG-TTCTGTGT--ACTGAAATATGC-TAGA  984

seq1  CGAGAAAAATACAAAGAGTGAAATTATGTTTTTCAAAAAATCAAGTAAGT  1043
       ||||||   |  |||||||||| |||||||     |||||| ||||   
seq2  -GAGAAA---ATCAAGAGTGAAA-TATGTTT----CAAAATC-AGTA--G  1022

seq1  TTAGTGAATGCATAGTAAAATGAAGTTCTCTCTTA  1078
      |||||| |||| |||| ||||||||||||| ||||
seq2  TTAGTG-ATGC-TAGT-AAATGAAGTTCTC-CTTA  1053