BAC Information

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BAC

Clone NameB6Ng01-036O04
Chromosome8 (Build37)10 (Build37)
Map Location 76,043,524 - 76,043,849104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCrsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large, LOC100039001, LOC666134
Downstream geneCrry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036O04.bB6Ng01-036O04.g
ACCDH864922DH864923
length326574
definitionDH864922|Mus musculus domesticus DNA, BAC clone: B6Ng01-036O04, 5' end.DH864923|Mus musculus domesticus DNA, BAC clone: B6Ng01-036O04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(76,043,524 - 76,043,849)(104,053,903 - 104,054,363)
sequence
tcacatcctcaaacaaaagcataacgtgaagaatgaatgttggaattggt
gtggagtgtttaaattctcaaagccttcctttactgatagacttcattcc
ataggattgcatcacaaaaacctctccaaactgtgccaccaattagggac
caagtatttcaatatctgagcctacagggagcattctcattcaaatgatt
acaacaaaaatgatgatgtgaatagtggtgataatggttgtggttgggat
tatagtaatgatcacacaaacaaacttcctgcaagcctatcatctttttt
taaacattatctataattttattctc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcaggcaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggagacagc
agatgctgccatggatgtggagaaagaggaacgctcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatccctgagtgaggtaacacatttcaca
aaggaactcacacaatatgtactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_76043524_76043849
seq2: B6Ng01-036O04.b_51_376 (reverse)

seq1  GAGAATCTGATTATAGATAATGTTTAAAAAAAGATGATAGGCTTGCAGGA  50
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAAAATTATAGATAATGTTTAAAAAAAGATGATAGGCTTGCAGGA  50

seq1  AGTTTGTTTGTGTGATCATTACTATAATCCCAACCACAACCATTATCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTGTGTGATCATTACTATAATCCCAACCACAACCATTATCACC  100

seq1  ACTATTCACATCATCATTTTTGTTGTAATCATTTGAATGAGAATGCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCACATCATCATTTTTGTTGTAATCATTTGAATGAGAATGCTCCC  150

seq1  TGTAGGCTCAGATATTGAAATACTTGGTCCCTAATTGGTGGCACAGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTCAGATATTGAAATACTTGGTCCCTAATTGGTGGCACAGTTTG  200

seq1  GAGAGGTTTTTGTGATGCAATCCTATGGAATGAAGTCTATCAGTAAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTTTTGTGATGCAATCCTATGGAATGAAGTCTATCAGTAAAGGA  250

seq1  AGGCTTTGAGAATTTAAACACTCCACACCAATTCCAACATTCATTCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGAGAATTTAAACACTCCACACCAATTCCAACATTCATTCTTCA  300

seq1  CGTTATGCTTTTGTTTGAGGATGTGA  326
      ||||||||||||||||||||||||||
seq2  CGTTATGCTTTTGTTTGAGGATGTGA  326

seq1: chr10_104053903_104054363
seq2: B6Ng01-036O04.g_68_538 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGCGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||||||||  | |||||||||||||| ||||||||||||||||||||||
seq2  TCCACATCCATGGCAGCATCTGCTGTCTCCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTGC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471