BAC Information

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BAC

Clone NameB6Ng01-038A24
Chromosome10 (Build37)
Map Location 109,151,834 - 109,304,095
singlet/doubletdoublet
Overlap geneNav3
Upstream geneSyt1
Downstream geneLOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038A24.bB6Ng01-038A24.g
ACCDH865744DH865745
length5131,067
definitionDH865744|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A24, 5' end.DH865745|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,303,579 - 109,304,095)(109,151,834 - 109,152,918)
sequence
ctttaattccatttctctgtttctcctcatacagtctgacagccagatat
gcagctcagtctaaacacagtggaattgcaaccagtcagaaaaagcctac
taggtcagttcatgtctctaatctattgtttgttagtgatattcacgtga
atgccactgatactctgtccggtcactctaagatctagaaaacatgatta
cttctgagagccctaagtttagagcactcagtgcttccaagtggacttcc
agatggagactgtggggtgagtggattcggtggttaagtgggtttagagg
tctggctttgcttgagatttaggaaatacacagtgatggtgggcagaggc
tgtgtccttcgtttagagcaagtgaggaacaaggaccttataagacctcc
ctgatctttttctaggtctcataatctgaaagtttctcaacagaattttt
aactattttttaaagaggcatatatggagaaattaacttaagatgagagt
ctatctaaaatat
gaattcaattcttagcattgccaaaaaaaaaaaaaaaaaaaaaggagggg
cgctgaagagatagccgagcagttaaataagagtagtttagattggagat
ggaggcagggagatccctgggcgttcctggcctatcggttagctgtaagc
taaggagagatcctacctcaagggactaggcagagagggttggagaacac
ttgaccttctgacctatctgcaggacactgctgcacacaggtgtgcatat
acattcgcacagacagacacaaactacattttaaaagaatgtaactggat
agttcctaaaatttttctgttttgattttttaaaacaatttatctgtgca
tatgtgcttacatacatgtgggtttatgctcctgagcgcaatgcttctag
aattcaaaggaggtgtcagatcccatgtaagctcctgtattttcaggagt
ttgtcagccacaaccctttttctttttctttattattactattggatatt
ttatttatttacatttcaaatgttatcccctttcccagttcccactccag
aaactccctactgcatcccccttccccctgcttctgtgagggtgctcgtc
cacctacccacctactgctgcctccctgccctggcattcccctacactgg
ggcatcgagcctccacaacaccaagggcctctcctcccattgatgcccaa
caaggccatgctctgctacacatgcagctggagccatgggtcccaccatg
ggcactcctttggccagaattcttaggtgctggtttctgagttcagattc
tcttgacaaataaagaacaaccttaatgggaagctactcatcagccctaa
tacctctcctttggagcgatggcgagatgaataggattgaagtaaaattc
ataaagaataaaatggtttatttaatgaaaaaatcatattaaactttccc
aggaaattataccagttatacttctatgatgcatacagtagacaaacccg
caagcaaattatgatagtgatttaaattacttagcatctagctaccaggg
aaatttatgtttgcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109303579_109304095
seq2: B6Ng01-038A24.b_44_561 (reverse)

seq1  TATTTTAGATAGACTCTCATCTTAAGTTAATTTCTCCATATATGCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGATAGACTCTCATCTTAAGTTAATTTCTCCATATATGCCTCTT  50

seq1  T-CAAAATAGTTAAAAATTCTGTTGTGAAACTTTCAGATTCTGAGACCTT  99
      |  |||||||||||||||||||||| |||||||||||||| |||||||| 
seq2  TAAAAAATAGTTAAAAATTCTGTTGAGAAACTTTCAGATTATGAGACCTA  100

seq1  GAAAAAGATCAGGGAGGTCTTATAAGGTCCTTGTTCCTCACTTGCTCTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATCAGGGAGGTCTTATAAGGTCCTTGTTCCTCACTTGCTCTAA  150

seq1  ACGAAGGACACAGCCTCTGCCCACCATCACTGTGTATTTCCTAAATCTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGGACACAGCCTCTGCCCACCATCACTGTGTATTTCCTAAATCTCA  200

seq1  AGCAAAGCCAGACCTCTAAACCCACTTAACCACCGAATCCACTCACCCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCCAGACCTCTAAACCCACTTAACCACCGAATCCACTCACCCCA  250

seq1  CAGTCTCCATCTGGAAGTCCACTTGGAAGCACTGAGTGCTCTAAACTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCATCTGGAAGTCCACTTGGAAGCACTGAGTGCTCTAAACTTAG  300

seq1  GGCTCTCAGAAGTAATCATGTTTTCTAGATCTTAGAGTGACCGGACAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCAGAAGTAATCATGTTTTCTAGATCTTAGAGTGACCGGACAGAG  350

seq1  TATCAGTGGCATTCACGTGAATATCACTAACAAACAATAGATTAGAGACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGGCATTCACGTGAATATCACTAACAAACAATAGATTAGAGACA  400

seq1  TGAACTGACCTAGTAGGCTTTTTCTGACTGGTTGCAATTCCACTGTGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGACCTAGTAGGCTTTTTCTGACTGGTTGCAATTCCACTGTGTTT  450

seq1  AGACTGAGCTGCATATCTGGCTGTCAGACTGTATGAGGAGAAACAGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGCTGCATATCTGGCTGTCAGACTGTATGAGGAGAAACAGAGAA  500

seq1  ATGGAATTAAAGGAATTC  517
      ||||||||||||||||||
seq2  ATGGAATTAAAGGAATTC  518

seq1: chr10_109151834_109152918
seq2: B6Ng01-038A24.g_67_1133

seq1  GAATTCAATTCTTAGCATTGCCAAAAAAAAAAAAAAAAAAAAAGGAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTTAGCATTGCCAAAAAAAAAAAAAAAAAAAAAGGAGGGG  50

seq1  CGCTGAAGAGATAGCCGAGCAGTTAAATAAGAGTAGTTTAGATTGGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAAGAGATAGCCGAGCAGTTAAATAAGAGTAGTTTAGATTGGAGAT  100

seq1  GGAGGCAGGGAGATCCCTGGGCGTTCCTGGCCTATCGGTTAGCTGTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGGAGATCCCTGGGCGTTCCTGGCCTATCGGTTAGCTGTAAGC  150

seq1  TAAGGAGAGATCCTACCTCAAGGGACTAGGCAGAGAGGGTTGGAGAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGAGATCCTACCTCAAGGGACTAGGCAGAGAGGGTTGGAGAACAC  200

seq1  TTGACCTTCTGACCTATCTGCAGGACACTGCTGCACACAGGTGTGCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTCTGACCTATCTGCAGGACACTGCTGCACACAGGTGTGCATAT  250

seq1  ACATTCGCACAGACAGACACAAACTACATTTTAAAAGAATGTAACTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCGCACAGACAGACACAAACTACATTTTAAAAGAATGTAACTGGAT  300

seq1  AGTTCCTAAAATTTTTCTGTTTTGATTTTTTAAAACAATTTATCTGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTAAAATTTTTCTGTTTTGATTTTTTAAAACAATTTATCTGTGCA  350

seq1  TATGTGCTTACATACATGTGGGTTTATGCTCCTGAGCGCAATGCTTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTTACATACATGTGGGTTTATGCTCCTGAGCGCAATGCTTCTAG  400

seq1  AATTCAAAGGAGGTGTCAGATCCCATGTAAGCTCCTGTATTTTCAGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAGGAGGTGTCAGATCCCATGTAAGCTCCTGTATTTTCAGGAGT  450

seq1  TTGTCAGCCACAACCCTTTTTCTTTTTCTTTATTATTACTATTGGATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGCCACAACCCTTTTTCTTTTTCTTTATTATTACTATTGGATATT  500

seq1  TTATTTATTTACATTTCAAATGTTATCCCCTTTCCCAGTTCCCACTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTACATTTCAAATGTTATCCCCTTTCCCAGTTCCCACTCCAG  550

seq1  AAACTCCCTACTGCATCCCCCTTCCCCCTGCTTCTGTGAGGGTGCTCGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCTACTGCATCCCCCTTCCCCCTGCTTCTGTGAGGGTGCTCGTC  600

seq1  CACCTACCCACCTACTGCTGCCTCCCTGCCCTGGCATTCCCCTACACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACCCACCTACTGCTGCCTCCCTGCCCTGGCATTCCCCTACACTGG  650

seq1  GGCATCGAGCCTCCACAACACCAAGGGCCTCTCCTCCCATTGATGCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCGAGCCTCCACAACACCAAGGGCCTCTCCTCCCATTGATGCCCAA  700

seq1  CAAGGCCATGCTCTGCTACACATGCAGCTGGAGCCATGGGTCCCACCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCATGCTCTGCTACACATGCAGCTGGAGCCATGGGTCCCACCATG  750

seq1  GGCACTCCTTTGGCCAGAATTCTTAGGTGCTGGTTTCTGAGTTCAGATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCCTTTGGCCAGAATTCTTAGGTGCTGGTTTCTGAGTTCAGATTC  800

seq1  TCTTGACAAATAAAGAACAACCTTAATGGGAAGCTACTCATCAGCCCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACAAATAAAGAACAACCTTAATGGGAAGCTACTCATCAGCCCTAA  850

seq1  TACCTCTCCTTTGGAGCGATGGCGAGATGAATAGGATTGAAGTAAAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCCTTTGGAGCGATGGCGAGATGAATAGGATTGAAGTAAAATTC  900

seq1  ATAAAGAATAAAATGGTTTATTTAATGAAAAAAATCATATTAAACTTTCC  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATAAAGAATAAAATGGTTTATTTAATG-AAAAAATCATATTAAACTTTCC  949

seq1  CAGGAAAATTATACCAGTTATACTTCTATGAATGCATACAAAGTAGACAA  1000
      |||| ||||||||||||||||||||||||| ||||||||  ||||||| |
seq2  CAGG-AAATTATACCAGTTATACTTCTATG-ATGCATAC--AGTAGAC-A  994

seq1  AACACGCAAAGCAAAATTAATGATAAGGTGATTTAAATTACCTAAGCATT  1050
      ||| ||| |||||||  | ||||||  ||||||||||||| || |||| |
seq2  AACCCGC-AAGCAAA--TTATGATA--GTGATTTAAATTA-CTTAGCA-T  1037

seq1  CTAGCTAACCAAGGGGGAAATTTATGTTTTGCAGA  1085
      |||||| ||||   |||||||||||| ||||||||
seq2  CTAGCT-ACCA---GGGAAATTTATG-TTTGCAGA  1067