BAC Information

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BAC

Clone NameB6Ng01-038F10
Chromosome10 (Build37)4 (Build37)
Map Location 104,053,557 - 104,054,32450,634,786 - 50,635,989
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038F10.bB6Ng01-038F10.g
ACCDH865927DH865928
length1,0441,188
definitionDH865927|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F10, 5' end.DH865928|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,557 - 104,054,324)(50,634,786 - 50,635,989)
sequence
gaattcactgaaggttacaaagtctaagaaatgagctgaatgaggttgca
agccaaggtaccaatgtacaaaactcttctggatacaataacaatgaagt
atctaaaattaaaagtaagcaattctgtttccgtgatactaatttaagaa
tgtggtgaagaataaatggaatgaaatgtagacaaaacatatccccgaaa
atgacaaaataatttaaaataagttatgaaaacttgaataaaaatacctc
actcatgttcataaatccagactcagtattgttaaaactgcacaatatcc
tttaaattggtataaaattaacacagattataaggaagtatcatctaata
ttttgcagaaattggcaagccaaattgtaaaattcacttgaaattcaaag
gatcaagaagagctaaggcaatcttgaaaagagaagataaaattgtaata
ctaaatgtattacagttctataagttattataaaatagtactgataaaaa
tgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
attccacctcacaccagtcagaatggctaagatcaaaaattcaggtgaca
gcagatgctggtgaggatgtggagaaagaggaacactcctccattgttgg
tgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcct
cagaaaactggatatagtactaccggaggatccagcaatacctctcctgg
gcatatatccagaagatgccccaactggtaagaaggacacatgctccact
atgttcatagcagccttatttataatagccagaagctggaaggaacccag
atgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaa
tggagtactactcagctattaaaatgaatgaatttatgaaattcctagcc
aaatggatggacctggagggcatcatcctgagtgagtaacacattcacaa
ggactcacacaatatgtactcactgataagtggatattagccca
gaattctcatcagagagatttcttctaccaactcatgggacaacaaatca
ttaggcagagctaataataatgtaacaactgatttaagtgctgattccca
cttacccactgtactggctagttttgtgtcaacttgacacagctggagtt
atcacagagaaaggagcttcagttgaggaaatgcctccatgagatccaac
tctaaggcattttctcaattagtgatcaaggggaaaaggccccttgtggg
tgggaccatctctgggctggtagtcttgggttctataagagagcaggctg
agcaagccagggaaggcaagccagtaaagaacatccctccatggcctctg
catcagctcctgctccctgacctgtttgagttccagtcctgacttccttt
ggtgatgaacagcagcatcgaagtgtaagccgaataaaccctttcctccc
caacttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgacta
agatacccactatgctacaaagtgatagattaaaaaaaaaacatttaatt
tttaaagataataatttttggataaagaaatttatccaaacctaatactt
ctaaaacttcacacatactatcacttaggctttttaaattaaactaaaaa
ttttcaaataaaattcacaattcaaatcttatttattgggatttgtttcc
aaatgtccaacataattttggcctggggatttttatattctaccttttca
gaacctatctctgtaccagtatcattttgttcaagacatgagttttacaa
tataggcaaatataatattttagtgaggtcaactttttagaatatatgtt
attatgtgtttgagaacctcatacttttgtatattgttgctgatcattta
ttacctatttttctctttgactcctcaatttcccccacactgccacactt
ccttaattattctctaatagctcatcctatttataataatatactattac
ttattactattacatatctagtctaaatgtgccatctatatgctcatggc
tatgaggtcatacactggaaaagtctactgcatggagccacacccttgaa
gaaaattgacctattcctcctttgcgatcctcagctccgaagctctcact
ctattcatcactaattggggctttatgctacttctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053557_104054324
seq2: B6Ng01-038F10.b_537_1090 (reverse)

seq1  TGGGCTAATATCCACTTATCAGTGAGTACATATTGCGCGAGTTCCTTTGT  50
      ||||||||||||||||||||||||||||||||||| | ||||  | ||||
seq2  TGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGT--CCTTGT  48

seq1  GATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCATCCATTTGCC  100
      || || |||| | ||||||||||||| | ||||||||||||||||||| |
seq2  GAATGTGTTA-CTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGC  97

seq1  TAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAATT  150
      |||||||||||||||||||||| ||||||||||                 
seq2  TAGGAATTTCATAAATTCATTCATTTTAATAGC-----------------  130

seq1  TAATTAATGTAATTACAATTAATTAATTTATTAATTAAATAATTTAATAA  200
                                                        
seq2  --------------------------------------------------  130

seq1  TTTAATTGATAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAAT  250
                                                        
seq2  --------------------------------------------------  130

seq1  AATAATTTAATAATAAATTAAATATTTTAAAATTAATAATAATTTTATAA  300
                                                     | |
seq2  -----------------------------------------------TGA  133

seq1  GTAAATAATTTAATTAATGTAATTTAATTAATGTAATTACATTACATTTA  350
      |||                             |||               
seq2  GTA-----------------------------GTA---------------  139

seq1  ATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTT  400
          |||||||||||| ||||||||||||||||||||| |||||||||||
seq2  ----CTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTT  185

seq1  GAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGC  450
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  GAGGGGCATCTGGGTTCCTTCCAGCTTCTGGCTATTATAAATAAGGCTGC  235

seq1  TATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTG  500
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  TATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTG  285

seq1  GATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCC  550
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  GATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATATCC  335

seq1  AATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCT  600
      | |||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  AGTTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCT  385

seq1  GCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCACC  435

seq1  AGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTG  485

seq1  AGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGA  535

seq1  TGTTGAACATTTTT-TCAG  768
      |||||||||||||| ||||
seq2  TGTTGAACATTTTTATCAG  554

seq1: chr4_50634786_50635989
seq2: B6Ng01-038F10.g_68_1255

seq1  GAATTCTCATCAGAGAGATTTCTTCTACCAACTCATGGGACAACAAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCAGAGAGATTTCTTCTACCAACTCATGGGACAACAAATCA  50

seq1  TTAGGCAGAGCTAATAATAATGTAACAACTGATTTAAGTGCTGATTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAGAGCTAATAATAATGTAACAACTGATTTAAGTGCTGATTCCCA  100

seq1  CTTACCCACTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCACTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTT  150

seq1  ATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAAC  200

seq1  TCTAAGGCATTTTCTCAATTAGTGATCAAGGGGAAAAGGCCCCTTGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGCATTTTCTCAATTAGTGATCAAGGGGAAAAGGCCCCTTGTGGG  250

seq1  TGGGACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTG  300

seq1  AGCAAGCCAGGGAAGGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCAGGGAAGGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTG  350

seq1  CATCAGCTCCTGCTCCCTGACCTGTTTGAGTTCCAGTCCTGACTTCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTCCTGCTCCCTGACCTGTTTGAGTTCCAGTCCTGACTTCCTTT  400

seq1  GGTGATGAACAGCAGCATCGAAGTGTAAGCCGAATAAACCCTTTCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGAACAGCAGCATCGAAGTGTAAGCCGAATAAACCCTTTCCTCCC  450

seq1  CAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTA  500

seq1  AGATACCCACTATGCTACAAAGTGATAGATTAAAAAAAAAACATTTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCCACTATGCTACAAAGTGATAGATTAAAAAAAAAACATTTAATT  550

seq1  TTTAAAGATAATAATTTTTGGATAAAGAAATTTATCCAAACCTAATACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGATAATAATTTTTGGATAAAGAAATTTATCCAAACCTAATACTT  600

seq1  CTAAAACTTCACACATACTATCACTTAGGCTTTTTAAATTAAACTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTTCACACATACTATCACTTAGGCTTTTTAAATTAAACTAAAAA  650

seq1  TTTTCAAATAAAATTCACAATTCAAATCTTATTTATTGGGATTTGTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATAAAATTCACAATTCAAATCTTATTTATTGGGATTTGTTTCC  700

seq1  AAATGTCCAACATAATTTTGGCCTGGGGATTTTTATATTCTACC-TTTCA  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATGTCCAACATAATTTTGGCCTGGGGATTTTTATATTCTACCTTTTCA  750

seq1  GAACCTATCTCTGTACCAGTATCATTTTGTTCAAGACATGAGTTTTACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTATCTCTGTACCAGTATCATTTTGTTCAAGACATGAGTTTTACAA  800

seq1  TATAGGCAAATATAATA-TTTAGTGAGGTCAACTTTTTAGAATATATGTT  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATAGGCAAATATAATATTTTAGTGAGGTCAACTTTTTAGAATATATGTT  850

seq1  ATTATGTGTTTGAGAACCTCATACTTTTGTATATTGTTTGCTGATCATTT  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTATGTGTTTGAGAACCTCATACTTTTGTATATTG-TTGCTGATCATTT  899

seq1  ATTACCTATTTTTCTCTTTGACTCCTCAATTTCCCCCACACTGCCACACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTATTTTTCTCTTTGACTCCTCAATTTCCCCCACACTGCCACACT  949

seq1  TCCTTAATTATTCTCTAAATAGCTCATCCTATTTATAATAATATTACTTA  998
      |||||||||||||||| |||||||||||||||||||||||||| ||| ||
seq2  TCCTTAATTATTCTCT-AATAGCTCATCCTATTTATAATAATA-TAC-TA  996

seq1  TTACTTATTACTATTACATATCTAGTCTAATATGTGCCATCTATATGCTC  1048
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTACTTATTACTATTACATATCTAGTCTAA-ATGTGCCATCTATATGCTC  1045

seq1  ATGGCTATGAGGTCATACACTGGAGAAAGTCTACCTGCTATGAGCCACAC  1098
      |||||||||||||||||||||||| |||||||| ||||   |||||||||
seq2  ATGGCTATGAGGTCATACACTGGA-AAAGTCTA-CTGCATGGAGCCACAC  1093

seq1  CCTTAGAGAAAATTGA-CTATTCCTCCTTTGGCAGTCCTCAGCTCGCAGA  1147
      ||||  |||||||||| ||||||||||||| ||  |||||||||| |  |
seq2  CCTTGAAGAAAATTGACCTATTCCTCCTTT-GCGATCCTCAGCTC-CGAA  1141

seq1  GCTCCTACTCTATCACTTCAGCTAAAATTGGGGGCTTGTAAAGTGCTACT  1197
      ||||  ||||||    |||| |   |||| ||||||| ||   |||||||
seq2  GCTCTCACTCTA----TTCATCACTAATT-GGGGCTT-TA---TGCTACT  1182

seq1  CTCTCCA  1204
       ||||||
seq2  -TCTCCA  1188