BAC Information

Click to search

BAC

Clone NameB6Ng01-038K18
Chromosome10 (Build37)
Map Location 39,856,753 - 39,977,886
singlet/doubletdoublet
Overlap geneSlc16a10, Bxdc1, 2410016F19Rik
Upstream geneTube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342
Downstream geneAmd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6, A530089I17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038K18.bB6Ng01-038K18.g
ACCDH866161DH866162
length1,148569
definitionDH866161|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K18, 5' end.DH866162|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,856,753 - 39,857,912)(39,977,312 - 39,977,886)
sequence
gaattcttggacctatctggttggtccctaacactgcaactgaagaatgg
agagggatctggccagacagtccctataggtctccctttcagtgctgctg
ctagactgctagctactgtacccttcttatttgttgaccaacacagttga
ctaagcttcatcaaccctatgactaaaaatggacccgttaactttgaatg
gcaatctgaaagcttccatgtcacacgtaactataaccaaataactgtgg
tttttctctgggtaatctgtctaccgccaattcaactcagtgatgtttga
aatggaaggtctagattttatagtagatatcaacgtaaaggtaaatgtgg
aaacttagggtttgacacgagctggcttgaagcttcggctaaaaccctat
tattattcctaaagagagtaatgaggtaatgcgacatgctgccacttctg
aatgctacccaattcctgctcagtggcagaaccatctaaagaacatactt
tcaccacaaagggaaagtggtgaaacagtaaagcttgtgaacagggagcc
tctctttccacatctaatggttgatttaaaaaataaaaataaaaacaaat
aagaacaaaaacaaaaacaaaaccctaatgttaacttgcgttttaaatag
tctggagagaagtatattgtgtggtgtttcccagtcttaaaaacagacct
ccgctttcaagaaaggccattaaagagcatacgtggggcccagagaaata
gctcagtgggtaaaggcattggctgctcaagcctgagcgccagaacctgt
gtaaaagctgaaagtgagaccaagcacctcacactgtcctctgacctcca
cagacacaccatggcatgggcacaccctcacacgcacacacatctacatg
tacacacatgcacacacacacattacaagaagaaaacagctgtaagatta
gcacccttcatgagccccaagactaccatggacttcatgaggagacagag
aactctagactcagcagtccactgttttccagctccggcagttgagacaa
atgcatggattctagcagaaccaatgctccagttactgtggtaccatttt
ctttcccagcgttcgactgcttccactcagcacagcatgagcttagga
caccctgtcccagtagcgtcactgctgggtttgtgttaactaagtagcca
ctctggcctagaatttgcattaatcctctccctcccgcgtccttagatgt
tgggatgaaaagtggaggccaccattgatcctctagtctccttcggcaga
caataaacgtgaggttttgttttatagtggaggcagttgattacgctcat
cctcagctacttactgagttcagtgtagcctgagctctatgagccacgtt
cttcaaagtggggctaaataccctaaattcccgaagctcggagcgtgtcg
agtctccacgtgggacccacttacggaagcctggcgtcgccatcttgctt
tctggccggaagccggacgccgctgcccgtatccaaaatggcatccacag
ggggcgtggccagtgatggcgtctccgaacgctatggcggcggcagtgga
tcccatttgggaggacttggaggaggaggaagaggagctagaggaggttg
taagcgagggtcagaggcctgcggcgcgggcggtcttggttgagccaccc
ctgggtggggaagggagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_39856753_39857912
seq2: B6Ng01-038K18.b_43_1190

seq1  GAATTCTTGGACCTATCTGGTTGGTCCCTAACACTGCAACTGAAGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGACCTATCTGGTTGGTCCCTAACACTGCAACTGAAGAATGG  50

seq1  AGAGGGATCTGGCCAGACAGTCCCTATAGGTCTCCCTTTCAGTGCTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATCTGGCCAGACAGTCCCTATAGGTCTCCCTTTCAGTGCTGCTG  100

seq1  CTAGACTGCTAGCTACTGTACCCTTCTTATTTGTTGACCAACACAGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTGCTAGCTACTGTACCCTTCTTATTTGTTGACCAACACAGTTGA  150

seq1  CTAAGCTTCATCAACCCTATGACTAAAAATGGACCCGTTAACTTTGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTTCATCAACCCTATGACTAAAAATGGACCCGTTAACTTTGAATG  200

seq1  GCAATCTGAAAGCTTCCATGTCACACGTAACTATAACCAAATAACTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTGAAAGCTTCCATGTCACACGTAACTATAACCAAATAACTGTGG  250

seq1  TTTTTCTCTGGGTAATCTGTCTACCGCCAATTCAACTCAGTGATGTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTGGGTAATCTGTCTACCGCCAATTCAACTCAGTGATGTTTGA  300

seq1  AATGGAAGGTCTAGATTTTATAGTAGATATCAACGTAAAGGTAAATGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGGTCTAGATTTTATAGTAGATATCAACGTAAAGGTAAATGTGG  350

seq1  AAACTTAGGGTTTGACACGAGCTGGCTTGAAGCTTCGGCTAAAACCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGGGTTTGACACGAGCTGGCTTGAAGCTTCGGCTAAAACCCTAT  400

seq1  TATTATTCCTAAAGAGAGTAATGAGGTAATGCGACATGCTGCCACTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCCTAAAGAGAGTAATGAGGTAATGCGACATGCTGCCACTTCTG  450

seq1  AATGCTACCCAATTCCTGCTCAGTGGCAGAACCATCTAAAGAACATACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTACCCAATTCCTGCTCAGTGGCAGAACCATCTAAAGAACATACTT  500

seq1  TCACCACAAAGGGAAAGTGGTGAAACAGTAAAGCTTGTGAACAGGGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAAAGGGAAAGTGGTGAAACAGTAAAGCTTGTGAACAGGGAGCC  550

seq1  TCTCTTTCCACATCTAATGGTTGATTTAAAAAATAAAAATAAAAACAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCACATCTAATGGTTGATTTAAAAAATAAAAATAAAAACAAAT  600

seq1  AAGAACAAAAACAAAAACAAAACCCTAATGTTAACTTGCGTTTTAAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAAACAAAAACAAAACCCTAATGTTAACTTGCGTTTTAAATAG  650

seq1  TCTGGAGAGAAGTATATTGTGTGGTGTTTCCCAGTCTTAAAAACAGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAGAAGTATATTGTGTGGTGTTTCCCAGTCTTAAAAACAGACCT  700

seq1  CCGCTTTCAAGAAAGGCCATTAAAGAGCATACGTGGGGCCCAGAGAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTTCAAGAAAGGCCATTAAAGAGCATACGTGGGGCCCAGAGAAATA  750

seq1  GCTCAGTGGGTAAAGGCATTGGCTGCTCAAGCCTGAGCGCCAGAACCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGGTAAAGGCATTGGCTGCTCAAGCCTGAGCGCCAGAACCTGT  800

seq1  GTAAAAGCTGAAAGTGAGACCAAGCACCTCACACTGTCCTCTGACCTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCTGAAAGTGAGACCAAGCACCTCACACTGTCCTCTGACCTCCA  850

seq1  CAGACACACCATGGCATGGGCACACCCTCACACGCACACACATCTACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACCATGGCATGGGCACACCCTCACACGCACACACATCTACATG  900

seq1  TACACACATGCACACACACACATTCACAAGAAGAAAACAGCAGGTAAGAT  950
      |||||||||||||||||||||||| ||||||||||||||||  |||||||
seq2  TACACACATGCACACACACACATT-ACAAGAAGAAAACAGC-TGTAAGAT  948

seq1  TAGCACCCTTCCATGAGCCCCAAGACTACCATGGACTTCATGAGGAGACA  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCCTT-CATGAGCCCCAAGACTACCATGGACTTCATGAGGAGACA  997

seq1  GAGAACTCTAGACTCAGCAGTCCACTGTTTTCCAGGCTCCGGCAGTTGAG  1050
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGAACTCTAGACTCAGCAGTCCACTGTTTTCCA-GCTCCGGCAGTTGAG  1046

seq1  ACAAATGCATGGATTCTAGCAGAAACCAATGCTCCAGTTAACTGTGGTAC  1100
      |||||||||||||||||||||| |||||||||||||||| ||||||||| 
seq2  ACAAATGCATGGATTCTAGCAG-AACCAATGCTCCAGTT-ACTGTGGTA-  1093

seq1  CCATTTTCTTTCCCAAAGCGTCCGACTGCCTTCCACTCAGGCAACAGCAT  1150
      ||||||||||||||  ||||| |||||| |||||||||||   |||||||
seq2  CCATTTTCTTTCCC--AGCGTTCGACTG-CTTCCACTCAG--CACAGCAT  1138

seq1  GAGCTTAGGA  1160
      ||||||||||
seq2  GAGCTTAGGA  1148

seq1: chr10_39977312_39977886
seq2: B6Ng01-038K18.g_69_643 (reverse)

seq1  GACTCCCTTCCCCACCCAGGGGTGGCTCAACCAAGACCGCCCGCGCCGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTTCCCCACCCAGGGGTGGCTCAACCAAGACCGCCCGCGCCGCA  50

seq1  GGCCTCTGACCCTCGCTTACAACCTCCTCTAGCTCCTCTTCCTCCTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGACCCTCGCTTACAACCTCCTCTAGCTCCTCTTCCTCCTCCTC  100

seq1  CAAGTCCTCCCAAATGGGATCCACTGCCGCCGCCATAGCGTTCGGAGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCTCCCAAATGGGATCCACTGCCGCCGCCATAGCGTTCGGAGACG  150

seq1  CCATCACTGGCCACGCCCCCTGTGGATGCCATTTTGGATACGGGCAGCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTGGCCACGCCCCCTGTGGATGCCATTTTGGATACGGGCAGCGG  200

seq1  CGTCCGGCTTCCGGCCAGAAAGCAAGATGGCGACGCCAGGCTTCCGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCGGCTTCCGGCCAGAAAGCAAGATGGCGACGCCAGGCTTCCGTAAG  250

seq1  TGGGTCCCACGTGGAGACTCGACACGCTCCGAGCTTCGGGAATTTAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCCACGTGGAGACTCGACACGCTCCGAGCTTCGGGAATTTAGGGT  300

seq1  ATTTAGCCCCACTTTGAAGAACGTGGCTCATAGAGCTCAGGCTACACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCCCCACTTTGAAGAACGTGGCTCATAGAGCTCAGGCTACACTGA  350

seq1  ACTCAGTAAGTAGCTGAGGATGAGCGTAATCAACTGCCTCCACTATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTAAGTAGCTGAGGATGAGCGTAATCAACTGCCTCCACTATAAAA  400

seq1  CAAAACCTCACGTTTATTGTCTGCCGAAGGAGACTAGAGGATCAATGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTCACGTTTATTGTCTGCCGAAGGAGACTAGAGGATCAATGGTG  450

seq1  GCCTCCACTTTTCATCCCAACATCTAAGGACGCGGGAGGGAGAGGATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACTTTTCATCCCAACATCTAAGGACGCGGGAGGGAGAGGATTAA  500

seq1  TGCAAATTCTAGGCCAGAGTGGCTACTTAGTTAACACAAACCCAGCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTCTAGGCCAGAGTGGCTACTTAGTTAACACAAACCCAGCAGTG  550

seq1  ACGCTACTGGGACAGGGTGGAATTC  575
      |||||||||||||||||||||||||
seq2  ACGCTACTGGGACAGGGTGGAATTC  575