BAC Information

Click to search

BAC

Clone NameB6Ng01-038O19
Chromosome10 (Build37)
Map Location 99,263,684 - 99,386,511
singlet/doubletdoublet
Overlap geneLOC100042246
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl
Downstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038O19.bB6Ng01-038O19.g
ACCDH866342DH866343
length8721,184
definitionDH866342|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O19, 5' end.DH866343|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,385,612 - 99,386,511)(99,263,684 - 99,264,886)
sequence
gaattctcctgtgataaatgtttaaacacttttaatcaacatgtctttca
tatatgtgatctgtttgttgctgagacatgatttataaactgaaagtaat
cacgaggactgtatagtatatgattccacttgtacgaaatatttagaata
ggcaaaactagagagaatcgtttggtgcttaaatagggccgaagaaagca
ggggtggacatgtggtttttgccttgcaaataacaaaagcgttaaaaaaa
tctccaaattagattgtggtgatgacaatgtcattttgcataccctagaa
ctcagcacctgcaaactttaccttatagattctgtacggtatctgaatta
tctctcgttgtcagtagtaagctggtttatttgtcgatgttgctgtttta
agactggagatagtgggatgggaatggccaggcttaattcatggctactt
gcatctgtgaataagagatgttcttttatgccttaagacccacttcatga
ggctggtggtggtcatttctgcttccatacttgactgaggttataaagtt
aatccatagatttagaagagtcggttaattaagagaatatccaatatgtt
ttataaaatcccccagagtcatatttttcatttttagaaattctatttaa
ttattccccagatcaactcgttgttttttatatttatcttctttatatag
taataatctaaaatctgttcttaaacaatttatcagactttgtctactaa
gagtaattacttactacaaagttaaataagttccctacataagaggtact
caaaaataactcttgattatgataatgccctgcaaggctgtactcaccca
ttctcactgtttctaagaaact
gaattccttattagtgatggtggaatatgaacttcattgtttttagaagg
gcaatatgtctttatgtatcaaaattttatgagtgcattcgtagtataac
atgaacaaagtcactgaaaattttctttaaatgaatacacctattgctat
aacagttttatttctatgaatttatcctaaaaaagaatcgtaagacaagt
aattatgtagctacacaagcctaaatgacaggattttcaaaccagtcaaa
atgtatggatctgagatctttcttttcggagttctctgccatgtatgttc
tctgttaattataaatgattaaaatgtaaagacacataagacgaaaagta
actgtggtaacaacgcgatttaactgaaaatttctgataacaacacagta
aagattctgtgttattattgtttagtgatttttgaaattgattctagcta
tgtactcccactgacttggaactttctatccttatacttctgcttcctaa
gtgctgtgatcaccattttttgatctcttttgggacaattactaatgact
attaaatgatgccattggaagtttacagaagaagggttttgaaaaactgc
tcagtttagtttttcttttcatcatccttctttgtttgtttgttactttg
ttgtccttctcaacaaattatttttatctagtagccttatcaataaggct
actattcatattgaaatactagactcttcaactactactattggattgat
cactgctcccatcaatatggctggcttgtgttttgtgtgtcttaccactt
atggtaacatgtatattttattaatttaatatatcattacttgtgttgat
ataatcaccctacatctcaaatggctttagatcattggtatcccagattt
taatgtcattcacttatgtgtgcccatatgcatggattgtgtcgtacaga
tcctacatggctccgatgattggcttgtattagatgtgaaagattgaaga
aaagacaacatagaagtctggattttggtggactggctttttcatatgag
aagccacaggtcctgtacgtcatgttgattatatagttgaacagaaggct
gactggattgttacaccttacaaagttcaaatttgaactcatataacaga
aggcgtactacctgtaagagcagttctgttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99385612_99386511
seq2: B6Ng01-038O19.b_45_916 (reverse)

seq1  AGTTTCTTTAAGAAAACAGTGGGGAAATGGGGTGAGTACAGCCCTCTGCA  50
      ||||||||  || |||||||| |  ||| ||||||||||||||   ||||
seq2  AGTTTCTT--AG-AAACAGTGAG--AAT-GGGTGAGTACAGCC--TTGCA  42

seq1  GTGGGCATTTATTCATAATTCAAGAGTTATTTTTTGAGTACCTTCTTTAT  100
        |||||||   |||||| |||||||||| |||||||||||||   ||||
seq2  --GGGCATT--ATCATAA-TCAAGAGTTA-TTTTTGAGTACCT--CTTAT  84

seq1  GTAAGGGAACTTTATTTAAACTTTGTTAAGTAAAGTAATTACTCTTAGTT  150
      || ||||||| |||||| ||||||||  ||| |||||||||||||||| |
seq2  GT-AGGGAAC-TTATTT-AACTTTGT--AGT-AAGTAATTACTCTTAG-T  127

seq1  AGACAAAGTCTGATAAATTGTTTAAGAACAGATTTTTAGATTATTAACTA  200
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  AGACAAAGTCTGATAAATTGTTTAAGAACAGA-TTTTAGATTATT-ACTA  175

seq1  TATAAAAGAAGATAAATATAAAAAAACAACGAAGTTGATCTGGGGAATAA  250
      ||| ||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  TAT-AAAGAAGATAAATAT-AAAAAACAACG-AGTTGATCTGGGGAATAA  222

seq1  TTAAATAGAATTTCTAAAAATGAAAAATATGACTCTGGGGGATTTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGAATTTCTAAAAATGAAAAATATGACTCTGGGGGATTTTATAA  272

seq1  AACATATTGGATATTCTCTTAATTAACCGACTCTTCTAAATCTATGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTGGATATTCTCTTAATTAACCGACTCTTCTAAATCTATGGATT  322

seq1  AACTTTATAACCTCAGTCAAGTATGGAAGCAGAAATGACCACCACCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATAACCTCAGTCAAGTATGGAAGCAGAAATGACCACCACCAGCC  372

seq1  TCATGAAGTGGGTCTTAAGGCATAAAAGAACATCTCTTATTCACAGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGTGGGTCTTAAGGCATAAAAGAACATCTCTTATTCACAGATGC  422

seq1  AAGTAGCCATGAATTAAGCCTGGCCATTCCCATCCCACTATCTCCAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCCATGAATTAAGCCTGGCCATTCCCATCCCACTATCTCCAGTCT  472

seq1  TAAAACAGCAACATCGACAAATAAACCAGCTTACTACTGACAACGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGCAACATCGACAAATAAACCAGCTTACTACTGACAACGAGAGA  522

seq1  TAATTCAGATACCGTACAGAATCTATAAGGTAAAGTTTGCAGGTGCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGATACCGTACAGAATCTATAAGGTAAAGTTTGCAGGTGCTGAG  572

seq1  TTCTAGGGTATGCAAAATGACATTGTCATCACCACAATCTAATTTGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGGTATGCAAAATGACATTGTCATCACCACAATCTAATTTGGAGA  622

seq1  TTTTTTTAACGCTTTTGTTATTTGCAAGGCAAAAACCACATGTCCACCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAACGCTTTTGTTATTTGCAAGGCAAAAACCACATGTCCACCCC  672

seq1  TGCTTTCTTCGGCCCTATTTAAGCACCAAACGATTCTCTCTAGTTTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTTCGGCCCTATTTAAGCACCAAACGATTCTCTCTAGTTTTGCC  722

seq1  TATTCTAAATATTTCGTACAAGTGGAATCATATACTATACAGTCCTCGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAAATATTTCGTACAAGTGGAATCATATACTATACAGTCCTCGTG  772

seq1  ATTACTTTCAGTTTATAAATCATGTCTCAGCAACAAACAGATCACATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTCAGTTTATAAATCATGTCTCAGCAACAAACAGATCACATATA  822

seq1  TGAAAGACATGTTGATTAAAAGTGTTTAAACATTTATCACAGGAGAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACATGTTGATTAAAAGTGTTTAAACATTTATCACAGGAGAATTC  872

seq1: chr10_99263684_99264886
seq2: B6Ng01-038O19.g_70_1253

seq1  GAATTCCTTA-GAGTGATGGTGGAATATGAACTTCATTGTTTTTAGAAGG  49
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTAGTGATGGTGGAATATGAACTTCATTGTTTTTAGAAGG  50

seq1  GCAATATGTCTTTATGTATCAAAATTTTATGAGTGCATTCGTAGTATAAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGTCTTTATGTATCAAAATTTTATGAGTGCATTCGTAGTATAAC  100

seq1  ATGAACAAAGTCACTGAAAATTTTCTTTAAATGAATACACCTATTGCTAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAAGTCACTGAAAATTTTCTTTAAATGAATACACCTATTGCTAT  150

seq1  AACAGTTTTATTTCTATGAATTTATCCTAAAAAAGAATCGTAAGACAAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTTATTTCTATGAATTTATCCTAAAAAAGAATCGTAAGACAAGT  200

seq1  AATTATGTAGCTACACAAGCCTAAATGACAGGATTTTCAAACCAGTCAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTAGCTACACAAGCCTAAATGACAGGATTTTCAAACCAGTCAAA  250

seq1  ATGTATGGATCTGAGATCTTTCTTTTCGGAGTTCTCTGCCATGTATGTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGATCTGAGATCTTTCTTTTCGGAGTTCTCTGCCATGTATGTTC  300

seq1  TCTGTTAATTATAAATGATTAAAATGTAAAGACACATAAGACGAAAAGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAATTATAAATGATTAAAATGTAAAGACACATAAGACGAAAAGTA  350

seq1  ACTGTGGTAACAACGCGATTTAACTGAAAATTTCTGATAACAACACAGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTAACAACGCGATTTAACTGAAAATTTCTGATAACAACACAGTA  400

seq1  AAGATTCTGTGTTATTATTGTTTAGTGATTTTTGAAATTGATTCTAGCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTGTGTTATTATTGTTTAGTGATTTTTGAAATTGATTCTAGCTA  450

seq1  TGTACTCCCACTGACTTGGAACTTTCTATCCTTATACTTCTGCTTCCTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCCACTGACTTGGAACTTTCTATCCTTATACTTCTGCTTCCTAA  500

seq1  GTGCTGTGATCACCATTTTTTGATCTCTTTTGGGACAATTACTAATGACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGATCACCATTTTTTGATCTCTTTTGGGACAATTACTAATGACT  550

seq1  ATTAAATGATGCCATTGGAAGTTTACAGAAGAAGGGTTTTGAAAAACTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGATGCCATTGGAAGTTTACAGAAGAAGGGTTTTGAAAAACTGC  600

seq1  TCAGTTTAGTTTTTCTTTTCATCATCCTTCTTTGTTTGTTTGTTACTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTAGTTTTTCTTTTCATCATCCTTCTTTGTTTGTTTGTTACTTTG  650

seq1  TTGTCCTTCTCAACAAATTATTTTTATCTAGTAGCCTTATCAATAAGGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTCTCAACAAATTATTTTTATCTAGTAGCCTTATCAATAAGGCT  700

seq1  ACTATTCATATTGAAATACTAGACTCTTCAACTACTACTATTGGATTGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCATATTGAAATACTAGACTCTTCAACTACTACTATTGGATTGAT  750

seq1  CACTGCTCCCATCAATATGGCTGGCTTGTGTTTTGTGTGTCTTACCACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCCCATCAATATGGCTGGCTTGTGTTTTGTGTGTCTTACCACTT  800

seq1  ATGGTAACATGTATA-TTTATTAA-TTAATATATCATTACTTGTGTTGAT  847
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  ATGGTAACATGTATATTTTATTAATTTAATATATCATTACTTGTGTTGAT  850

seq1  ATAATCACCCTACATCTCAAATGGC-TTAGATCATTGGTATCCCAGATTT  896
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAATCACCCTACATCTCAAATGGCTTTAGATCATTGGTATCCCAGATTT  900

seq1  TAATGTCATTCACTTATGTGTGCCCATATGCATGGATTGTGTCGTACAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCATTCACTTATGTGTGCCCATATGCATGGATTGTGTCGTACAGA  950

seq1  TCCTACATGGCTCCGATGATTGGCCTGTAATAGATGGTGAAAGAATGAAG  996
      |||||||||||||||||||||||| |||| ||||| |||||||| |||||
seq2  TCCTACATGGCTCCGATGATTGGCTTGTATTAGAT-GTGAAAGATTGAAG  999

seq1  AAAAGACAAACATAGAAGTCTGGAATTTGGTGGACT-GCCTTCTCATATG  1045
      ||||||| |||||||||||||||| ||||||||||| || || |||||| 
seq2  AAAAGAC-AACATAGAAGTCTGGATTTTGGTGGACTGGCTTTTTCATAT-  1047

seq1  GAGAAGCCACAGGGTCCTGGACGGTCATGTTGATTATATAGAGTTGAACC  1095
      ||||||||||| ||||||| || ||||||||||||||||  ||||||| |
seq2  GAGAAGCCACA-GGTCCTGTAC-GTCATGTTGATTATAT--AGTTGAA-C  1092

seq1  AGGAGGCTGACTGAGTGTTTACAGCTGAACAAGATGTCAGAGTTATGACA  1145
      || ||||||||||  |  ||||| || |  |||   ||| |  | ||| |
seq2  AGAAGGCTGACTGGATTGTTACACCTTACAAAG--TTCAAA--TTTGA-A  1137

seq1  TGCAGATGAACAAGGAGGCGGTTTTAGCTAACCTTAGTAGGAGCAGTCTC  1195
        || || ||| || |||||    || || ||||  ||| ||||||| ||
seq2  CTCATAT-AAC-AGAAGGCG----TA-CT-ACCT--GTAAGAGCAGT-TC  1176

seq1  TGTTGGGG  1203
      ||||||||
seq2  TGTTGGGG  1184