BAC Information

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BAC

Clone NameB6Ng01-039L20
Chromosome5 (Build37)10 (Build37)
Map Location 105,737,447 - 105,738,613104,054,120 - 104,054,680
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIbsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l
Downstream geneEG634650, Lrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039L20.bB6Ng01-039L20.g
ACCDH866921DH866922
length1,1591,094
definitionDH866921|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L20, 5' end.DH866922|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,737,447 - 105,738,613)(104,054,120 - 104,054,680)
sequence
gaattctctctgtgagagccctttaaagcagatccagctctccctcggtg
ttcacagatgtttcttcattattttaaacaatgccccaccttatatgcta
ctgtttcctacaagaaaaaatgtacaagatgtgaccaaatggaaataaaa
aacagaaaggaactttcaaagaaccgagtaaaaaagtcagtttgactacc
tctcatgagaaacagtttctggtgtattaagacttggaataagtcaagaa
tcaaaaatgtgacttactcacaactgaaaagacaacaatgacttccttct
cacaggctgtgtgaccatgagcagcctctggagcatgtctgaggggagcc
tcagtcactgtgccttctccacagctactgagttctcatgcaggactaga
gttgtccccagacaaggcactaagtatagtttgggcagcccatacactct
tgggtgtataacattcactggatggtggtcatcccaccaggggctgcaac
actaaaaaataaaaacatgacttcccaaccccgaccagtagctatgattc
cttagctagaagtggagttctgtgtccccttccatctagccaggaccaac
aacagtgatagtatttctaccacttctgtgacagaaataacttttctatt
acaactgctaaattgttaatggcatccacctaggtggtcacctgagtcct
caaatcctttgtgaattttgtgaaaagatgggtaaatatcaaatctccaa
ctcagtaagatccatggctctgagcttgagtctaagatcacaaacactca
ctgaaatggagtaaacgtttgccttactcaaaaattcagtacttacactc
aactccacaggatgtggagcctttcatgagatgtttaagtggggaagtgc
agaggtcttgtggctgtaactgctgttcttcaaaatctccccagacactc
actggctcttccaatagtgtgaggagacaccatagtcagtgctcattgac
ctaaatgacagctccccagacaccagcatgctgcactctgatttttgagt
tcccaggtccaacctatgaacaattttctgtatttttacatgtatctctt
tggttgtggtttatttaatcctagttccaaagacaacgaaaaactgcatg
tccatacct
gaattctgggtttgctttgaacctgagaactaagagttcagggtgtaggc
aaggcccaactacagcaatctcaactgcagctgtgtggaagggatgctgg
aagatggtgaggcacaggtaaccattcactgtgctctcgatgctcatctc
aactccataggttagaaagcggagtttattagttatttcctgttcccata
ataaaataccacaacagagccgttatggttggtctatgctcagcccaggg
agtggcactattagcaggtgtggccctgttggagtaggtgtagccttttt
ggagtgacaaaccagttggaggtttgtcactgtgggtgtgggctttaaga
tgctcatcctagctgcctggaagccagtattccactagcagccttcagat
gaagatgtagaactctcagctcctcctgcactatgcctgcctggatgctg
ccatgctctcaccttgaagataatggattgaacttctgaacctgtaagcc
agctccaattaagtgttggtccttgaacttctgaacctgtaagccagctc
caattaagtgttggtccttcactgaaacttatagaggagaaagtggggaa
aagccttgaagatatgggcacaggggaaaaattcctgaatagaacagcaa
tggcttgtgctgtaagatcgagaattgacaaatgggacctcatgaaactc
caaagcttctgcaaggcaaaagacaccgtcaataagacaaaaagaccacc
aacagattgggaaaggatctttacctatcctaaatcagataggggactaa
tatccaacatatataaagaactcaagaaggtgggcttcagaaaatcaaat
aaaccccattaaaatggggctcagaactgaacaaagaattctcacctgag
gaataccgaatggcagagaagcattcacatccttaatcatcagggaaatg
caaatcaaacaccctgagattcccctcacaccagtcagatgtctagatca
aattcagtgacgcagatgctgcgaggagtggagaaggagaccctcctcat
gtggtgggatgcagctggacatcactctgaatcagtctggcggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_105737447_105738613
seq2: B6Ng01-039L20.b_46_1204

seq1  GAATTCTCTCTGTGAGAGCCCTTTAAAGCAGATCCAGCTCTCCCTCGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTGAGAGCCCTTTAAAGCAGATCCAGCTCTCCCTCGGTG  50

seq1  TTCACAGATGTTTCTTCATTATTTTAAACAATGCCCCACCTTATATGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGATGTTTCTTCATTATTTTAAACAATGCCCCACCTTATATGCTA  100

seq1  CTGTTTCCTACAAGAAAAAATGTACAAGATGTGACCAAATGGAAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTACAAGAAAAAATGTACAAGATGTGACCAAATGGAAATAAAA  150

seq1  AACAGAAAGGAACTTTCAAAGAACCGAGTAAAAAAGTCAGTTTGACTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAGGAACTTTCAAAGAACCGAGTAAAAAAGTCAGTTTGACTACC  200

seq1  TCTCATGAGAAACAGTTTCTGGTGTATTAAGACTTGGAATAAGTCAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAGAAACAGTTTCTGGTGTATTAAGACTTGGAATAAGTCAAGAA  250

seq1  TCAAAAATGTGACTTACTCACAACTGAAAAGACAACAATGACTTCCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATGTGACTTACTCACAACTGAAAAGACAACAATGACTTCCTTCT  300

seq1  CACAGGCTGTGTGACCATGAGCAGCCTCTGGAGCATGTCTGAGGGGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTGTGTGACCATGAGCAGCCTCTGGAGCATGTCTGAGGGGAGCC  350

seq1  TCAGTCACTGTGCCTTCTCCACAGCTACTGAGTTCTCATGCAGGACTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACTGTGCCTTCTCCACAGCTACTGAGTTCTCATGCAGGACTAGA  400

seq1  GTTGTCCCCAGACAAGGCACTAAGTATAGTTTGGGCAGCCCATACACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCCCAGACAAGGCACTAAGTATAGTTTGGGCAGCCCATACACTCT  450

seq1  TGGGTGTATAACATTCACTGGATGGTGGTCATCCCACCAGGGGCTGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTATAACATTCACTGGATGGTGGTCATCCCACCAGGGGCTGCAAC  500

seq1  ACTAAAAAATAAAAACATGACTTCCCAACCCCGACCAGTAGCTATGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAATAAAAACATGACTTCCCAACCCCGACCAGTAGCTATGATTC  550

seq1  CTTAGCTAGAAGTGGAGTTCTGTGTCCCCTTCCATCTAGCCAGGACCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTAGAAGTGGAGTTCTGTGTCCCCTTCCATCTAGCCAGGACCAAC  600

seq1  AACAGTGATAGTATTTCTACCACTTCTGTGACAGAAATAACTTTTCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGATAGTATTTCTACCACTTCTGTGACAGAAATAACTTTTCTATT  650

seq1  ACAACTGCTAAATTGTTAATGGCATCCACCTAGGTGGTCACCTGAGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCTAAATTGTTAATGGCATCCACCTAGGTGGTCACCTGAGTCCT  700

seq1  CAAATCCTTTGTGAATTTTGTGAAAAGATGGGTAAATATCAAATCTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTTTGTGAATTTTGTGAAAAGATGGGTAAATATCAAATCTCCAA  750

seq1  CTCAGTAAGATCCATGGCTCTGAGCTTGAGTCTAAGATCACAAACACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAGATCCATGGCTCTGAGCTTGAGTCTAAGATCACAAACACTCA  800

seq1  CTGAAATGGAGTAAACGTTTGCCTTACTCAAAAATTCAGTACTTACACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGGAGTAAACGTTTGCCTTACTCAAAAATTCAGTACTTACACTC  850

seq1  AACTCCACAGGATGTGGAGCCTTTCATGAGATGTTTAAGT-GGGAAGTGC  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACTCCACAGGATGTGGAGCCTTTCATGAGATGTTTAAGTGGGGAAGTGC  900

seq1  AGAGGTCTTGTGGCTGTAACTGCTGTTCTTACAAAATCTCCCCAGACAAC  949
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  AGAGGTCTTGTGGCTGTAACTGCTGTTCTT-CAAAATCTCCCCAGAC-AC  948

seq1  TCACTGGC-CCTCCCATAGTGTGAGGAGACACCATAAGTCAGTGCTCATT  998
      |||||||| | ||| |||||||||||||||||||| ||||||||||||||
seq2  TCACTGGCTCTTCCAATAGTGTGAGGAGACACCAT-AGTCAGTGCTCATT  997

seq1  GACCTAAATGACAGCTCCCCAGACACCAGCATGCTGGCACTCTGATTTTG  1048
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  GACCTAAATGACAGCTCCCCAGACACCAGCATGCT-GCACTCTGATTTTT  1046

seq1  AAGTCCCAGGGTCCAAAGCTATGAAACAATTTTCTGTTATTTTTACATGT  1098
       ||| ||  ||||| || ||||| |||||||||||| |||||||||||||
seq2  GAGTTCCCAGGTCC-AACCTATG-AACAATTTTCTG-TATTTTTACATGT  1093

seq1  ATCCTCTTTGTTTGTGGGTTTTATTTAATCCTAGCTCCAAAAGAC-ACGA  1147
      || ||||||| ||||||  ||||||||||||||| ||| |||||| ||||
seq2  AT-CTCTTTGGTTGTGG--TTTATTTAATCCTAGTTCC-AAAGACAACGA  1139

seq1  AAACATGCATGTCTATACTT  1167
      |||  |||||||| |||| |
seq2  AAAACTGCATGTCCATACCT  1159

seq1: chr10_104054120_104054680
seq2: B6Ng01-039L20.g_637_1161 (reverse)

seq1  ACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAA  50
      |||||||||| ||||  |||||| | ||| ||   |||| |||||||| |
seq2  ACCGCCAGACTGATT--CAGAGT-GATGTCCA--GCTGC-ATCCCACC-A  43

seq1  CAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTC  100
      ||   |||||| ||  ||| |||||||| |||||| |||||||||| |||
seq2  CA--TGAGGAGGGT--CTCCTTCTCCAC-TCCTCG-CAGCATCTGC-GTC  86

seq1  ACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCA  150
      | |||||  ||||||| ||| || |||||||||||||||| |||||||||
seq2  A-CTGAA--TTTGATC-TAGACA-TCTGACTGGTGTGAGG-GGAATCTCA  130

seq1  GGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTT  200
      ||||   |||||||||||||||||||||||||||||||| ||||      
seq2  GGGT--GTTTGATTTGCATTTCCCTGATGATTAAGGATG-TGAA------  171

seq1  TTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTT  250
            ||||||||||||||||||||||||||||||||||||||||||||
seq2  ------TGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTT  215

seq1  CAGTTCTGAGCCCCATTTTTTAATAGGG-TTATTTGATTTTCTGAAGTCC  299
      |||||||||||||||  ||||||| ||| |||||||||||||||||| ||
seq2  CAGTTCTGAGCCCCA--TTTTAATGGGGTTTATTTGATTTTCTGAAGCCC  263

seq1  ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT  313

seq1  AGGATAGGTAAAGATCCTTTCTCAATCTGTTGGTGGTCTTTTTGTCTTAT  399
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT  363

seq1  TGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCAT  449
      ||||||||||||||||||||||||||||||| | ||| ||||||||||||
seq2  TGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATGAGGTCCCAT  413

seq1  TTATCAACTCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA  499
      || |||| |||| |||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA  463

seq1  TTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTA  549
      |||||||||||| ||||||||||| ||||||||||| ||||| |||||||
seq2  TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA  513

seq1  TAAGTTTCAGTG  561
      ||||||||||||
seq2  TAAGTTTCAGTG  525