BAC Information

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BAC

Clone NameB6Ng01-040E03
Chromosome10 (Build37)
Map Location 49,102,872 - 49,222,437
singlet/doubletdoublet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream geneLOC629652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E03.bB6Ng01-040E03.g
ACCDH867282DH867283
length3331,068
definitionDH867282|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E03, 5' end.DH867283|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,222,099 - 49,222,437)(49,102,872 - 49,103,941)
sequence
ttttgctttattattcagagaggaaatattatgttgatctttcatttgcc
tttctaaaagaactcataaatattttattcattaatcttcggaataccct
gtgaccaaattgaaccagaagagaaatgtaaagttattaaacagcccaga
tgttgaaatggtaccaagtcaatcctttataaaaaatttttgatgtactg
tttttatgtgctcattctgaaaataatcttatatatgtaataacagattt
tgtggatgataagaggagcacatacacctttctctctctctctctctctc
tctctctctctctctctctctctctctctctct
tagcttccatttttgaatcttgtcttccaattacattttattcccattgg
ttcctaaggtctgaattctgtcatagctaattagcactcacatcagaaac
gcagggagcactacaggttatcaccatgggaagtgaaagtgcctggagga
aagtggaaaacccttgcagctgccatcaggaaacataacaagaactaaag
actaaaagaccgtaaaattgtgaggatcaaactatgatgaagtcttccca
catgggctcataaaattttctcttgtcaaaaaaactctttatctaaagat
atttattttgtgtatattgcaaatagtatctcaagatactattaaaaaga
attttggcaagtgttcactttgagaagtaaacagatctcaaaatttgggt
cttaagtttcaataacatcgttatttagcatgcctgtagaacgggacccc
aatatttaatggaaaaatagttttttctttattttttcataggtttacct
gagggaatctagaaaactagtttgtgattaattggcagtattcaccatga
cactcaaaagcattcattatattctaggttctcaacaaacattaaaatat
gtaagtaaactatgaagccacaatcacatttttattagtttcagccaggg
tttatctcctttcaaaaaaataacttttgtgacttttaaagatataccaa
gtaaatctatctaaatatttgttggtaacaactattgtattgacaaatag
ttatgatgttgcccctatgactacagaaaatcaaccataatcttaaaagg
gaaaagcatgtctgcattacaaagcagtattcattaaactaaactctgtt
ctagagaatggctgcgtgacacacttgataaagtttttagagaaaggaca
aaagccttgctattgtactattcactcatactttagtaatataacgatgt
cagcaaaacaggtttaaagggaaattggtgttgtggataagaatgcatac
taactaaagaaaatactaatatgataattactcctggtaggccattactt
ccagcttgactatcagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49222099_49222437
seq2: B6Ng01-040E03.b_45_383 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAAAGGTGTATGTGCTCCTCTTATCATCCACAAAATCTGTTATTACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTGTATGTGCTCCTCTTATCATCCACAAAATCTGTTATTACATA  100

seq1  TATAAGATTATTTTCAGAATGAGCACATAAAAACAGTACATCAAAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATTATTTTCAGAATGAGCACATAAAAACAGTACATCAAAAATTT  150

seq1  TTTATAAAGGATTGACTTGGTACCATTTCAACATCTGGGCTGTTTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAGGATTGACTTGGTACCATTTCAACATCTGGGCTGTTTAATAA  200

seq1  CTTTACATTTCTCTTCTGGTTCAATTTGGTCACAGGGTATTCCGAAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATTTCTCTTCTGGTTCAATTTGGTCACAGGGTATTCCGAAGATT  250

seq1  AATGAATAAAATATTTATGAGTTCTTTTAGAAAGGCAAATGAAAGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATAAAATATTTATGAGTTCTTTTAGAAAGGCAAATGAAAGATCAA  300

seq1  CATAATATTTCCTCTCTGAATAATAAAGCAAAAGAATTC  339
      |||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTTCCTCTCTGAATAATAAAGCAAAAGAATTC  339

seq1: chr10_49102872_49103941
seq2: B6Ng01-040E03.g_75_1142

seq1  TAGCTTCCATTTTTGAATCTTGTCTTCCAATTACATTTTATTCCCATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCATTTTTGAATCTTGTCTTCCAATTACATTTTATTCCCATTGG  50

seq1  TTCCTAAGGTCTGAATTCTGTCATAGCTAATTAGCACTCACATCAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGGTCTGAATTCTGTCATAGCTAATTAGCACTCACATCAGAAAC  100

seq1  GCAGGGAGCACTACAGGTTATCACCATGGGAAGTGAAAGTGCCTGGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGCACTACAGGTTATCACCATGGGAAGTGAAAGTGCCTGGAGGA  150

seq1  AAGTGGAAAACCCTTGCAGCTGCCATCAGGAAACATAACAAGAACTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAAACCCTTGCAGCTGCCATCAGGAAACATAACAAGAACTAAAG  200

seq1  ACTAAAAGACCGTAAAATTGTGAGGATCAAACTATGATGAAGTCTTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGACCGTAAAATTGTGAGGATCAAACTATGATGAAGTCTTCCCA  250

seq1  CATGGGCTCATAAAATTTTCTCTTGTCAAAAAAACTCTTTATCTAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCTCATAAAATTTTCTCTTGTCAAAAAAACTCTTTATCTAAAGAT  300

seq1  ATTTATTTTGTGTATATTGCAAATAGTATCTCAAGATACTATTAAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTGTGTATATTGCAAATAGTATCTCAAGATACTATTAAAAAGA  350

seq1  ATTTTGGCAAGTGTTCACTTTGAGAAGTAAACAGATCTCAAAATTTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGCAAGTGTTCACTTTGAGAAGTAAACAGATCTCAAAATTTGGGT  400

seq1  CTTAAGTTTCAATAACATCGTTATTTAGCATGCCTGTAGAACGGGACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTTCAATAACATCGTTATTTAGCATGCCTGTAGAACGGGACCCC  450

seq1  AATATTTAATGGAAAAATAGTTTTTTCTTTATTTTTTCATAGGTTTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAATGGAAAAATAGTTTTTTCTTTATTTTTTCATAGGTTTACCT  500

seq1  GAGGGAATCTAGAAAACTAGTTTGTGATTAATTGGCAGTATTCACCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATCTAGAAAACTAGTTTGTGATTAATTGGCAGTATTCACCATGA  550

seq1  CACTCAAAAGCATTCATTATATTCTAGGTTCTCAACAAACATTAAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAAAGCATTCATTATATTCTAGGTTCTCAACAAACATTAAAATAT  600

seq1  GTAAGTAAACTATGAAGCCACAATCACATTTTTATTAGTTTCAGCCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAACTATGAAGCCACAATCACATTTTTATTAGTTTCAGCCAGGG  650

seq1  TTTATCTCCTTTCAAAAAAATAACTTTTGTGACTTTTAAAGATATACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCCTTTCAAAAAAATAACTTTTGTGACTTTTAAAGATATACCAA  700

seq1  GTAAATCTATCTAAATATTTGTTGGTAACAACTATTGTATTGACAAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCTATCTAAATATTTGTTGGTAACAACTATTGTATTGACAAATAG  750

seq1  TTATGATGTTGCCCCTATGACTACAGAAAATCAACCATAATCTTAAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATGTTGCCCCTATGACTACAGAAAATCAACCATAATCTTAAAAGG  800

seq1  GAAAAGCATGTCTGCATTACAAAGCAGTATTCATTAAACTAAACTCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCATGTCTGCATTACAAAGCAGTATTCATTAAACTAAACTCTGTT  850

seq1  CTAGAGAATGGCTGCGTGACACACTTGATAAAGTTTTTAGAGAAAGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAATGGCTGCGTGACACACTTGATAAAGTTTTTAGAGAAAGGACA  900

seq1  AAAGCCTTGCTATTGTACTATTCACTCATACTTTAGTAAATATAACGATG  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAGCCTTGCTATTGTACTATTCACTCATACTTTAGT-AATATAACGATG  949

seq1  TCAGCAAAACAGGTTTAAAGGAGAAATTGGTG-TGTGGATTAGAATGCAT  999
      ||||||||||||||||||||| |||||||||| ||||||| |||||||||
seq2  TCAGCAAAACAGGTTTAAAGG-GAAATTGGTGTTGTGGATAAGAATGCAT  998

seq1  ACTTACCTAAAGAAAATACT-ATATGATTAATTAACTCTGGTAGGCCATT  1048
      || || |||||||||||||| |||||| ||||||   |||||||||||||
seq2  AC-TAACTAAAGAAAATACTAATATGA-TAATTACTCCTGGTAGGCCATT  1046

seq1  AACTCCAGCTTGACTATCAGTA  1070
      |  |||||||||||||||||||
seq2  ACTTCCAGCTTGACTATCAGTA  1068