BAC Information

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BAC

Clone NameB6Ng01-040N01
Chromosome10 (Build37)
Map Location 105,998,224 - 106,107,581
singlet/doubletdoublet
Overlap genePpfia2
Upstream geneTmtc2, BC067068, Ccdc59, EG667758, EG639162, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040N01.bB6Ng01-040N01.g
ACCDH867667DH867668
length3441,029
definitionDH867667|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N01, 5' end.DH867668|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,107,238 - 106,107,581)(105,998,224 - 105,999,268)
sequence
ctagtgggatcatggcactgcagaagaatgcatatgtagcacagcagcca
ggatagcactcgatgggaaccttgcctgaaacatttgcctgggaagctat
ctaggatgtcactaggttcttgtaatttgcttgaatgtgagtcttgtgct
acgactgtgcagttctgcaatggaaactgtggtactacacctcccacaca
ggcttggagatatatctacactgcactatgtaatagcaatcaatatgtga
cttccattctttattgtacaatggtgttatgccaactctaaagaagtatg
tcctacatgtagaatgtcagttaatgtggggagggggttggaaa
gaattctcagggagccacgagaatttgaaactgaagaactgggcatctgg
catgcaggtaactatgtgcacttccctctggcacacacagtagaaagcat
ccctgccatgaattctatcatcctaagaatgttggcatgctcctaaactg
caagctcaatacaagaccacatttgggattaggaaatcaggttgaaaaca
aaaggcaatggtagcaatgcatatctcagcagaacatgtaccagaggatt
tatttttataatttgataatattccagatatattctgttctttaataagc
atttatattatggaaaaaatctgatctttcttaaggtcattgtgaataac
atctgataagaagtgatgtgggtcagaatgtagactacagaaagcatgct
cctgaatacattataacatatatcatagatgaagcaaacacaaacatttc
attctactccaggatgtaagtgagttttaaatctatctcattgcctcacc
cagaaattacagcaagaatgccagtgggaatgtgttttgtttttttcttt
cttttttttccccaccataagcagtaagatttgtgtttgctgaatattgg
actgggtttatttttaattgttctaagactcttgttaaatgccaatggat
ctctccagtctggagtgcaatgaataaatgagtccccattcggtttgtcc
tgagcttgaagcacacagtgtcccgaacatcctttagctctgttaatttt
cccccaccgagtagcagaaattgcacattctgtgtttttgtactttctgt
tcaaattttatagcatcttaatagttcttgcaatttcggtacacacacag
cacaacttttagaaattcaatttcccgaggctgctgctgagatgaggtta
tatatgtttttctactgtaaatgtacttaaaatttaaaacctcccaactc
attttgagttatattcaaagtctctcagtttattcatgtcaataatgagc
atatgatttagtttggactatcagttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106107238_106107581
seq2: B6Ng01-040N01.b_52_395 (reverse)

seq1  TTTCCAACCCCCTCCCCACATTAACTGACATTCTACATGTAGGACATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACCCCCTCCCCACATTAACTGACATTCTACATGTAGGACATACT  50

seq1  TCTTTAGAGTTGGCATAACACCATTGTACAATAAAGAATGGAAGTCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAGTTGGCATAACACCATTGTACAATAAAGAATGGAAGTCACAT  100

seq1  ATTGATTGCTATTACATAGTGCAGTGTAGATATATCTCCAAGCCTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGCTATTACATAGTGCAGTGTAGATATATCTCCAAGCCTGTGTG  150

seq1  GGAGGTGTAGTACCACAGTTTCCATTGCAGAACTGCACAGTCGTAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTAGTACCACAGTTTCCATTGCAGAACTGCACAGTCGTAGCACA  200

seq1  AGACTCACATTCAAGCAAATTACAAGAACCTAGTGACATCCTAGATAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCACATTCAAGCAAATTACAAGAACCTAGTGACATCCTAGATAGCT  250

seq1  TCCCAGGCAAATGTTTCAGGCAAGGTTCCCATCGAGTGCTATCCTGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCAAATGTTTCAGGCAAGGTTCCCATCGAGTGCTATCCTGGCTG  300

seq1  CTGTGCTACATATGCATTCTTCTGCAGTGCCATGATCCCACTAG  344
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTACATATGCATTCTTCTGCAGTGCCATGATCCCACTAG  344

seq1: chr10_105998224_105999268
seq2: B6Ng01-040N01.g_69_1097

seq1  GAATTCTCAGGGAGCCACGAGAATTTGAAACTGAAGAACTGGGCATCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGGAGCCACGAGAATTTGAAACTGAAGAACTGGGCATCTGG  50

seq1  CATGCAGGTAACTATGTGCACTTCCCTCTGGCACACACAGTAGAAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGTAACTATGTGCACTTCCCTCTGGCACACACAGTAGAAAGCAT  100

seq1  CCCTGCCATGAATTCTATCATCCTAAGAATGTTGGCATGCTCCTAAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCATGAATTCTATCATCCTAAGAATGTTGGCATGCTCCTAAACTG  150

seq1  CAAGCTCAATACAAGACCACATTTGGGATTAGGAAATCAGGTTGAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCAATACAAGACCACATTTGGGATTAGGAAATCAGGTTGAAAACA  200

seq1  AAAGGCAATGGTAGCAATGCATATCTCAGCAGAACATGTACCAGAGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAATGGTAGCAATGCATATCTCAGCAGAACATGTACCAGAGGATT  250

seq1  TATTTTTATAATTTGATAATATTCCAGATATATTCTGTTCTTTAATAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATAATTTGATAATATTCCAGATATATTCTGTTCTTTAATAAGC  300

seq1  ATTTATATTATGGAAAAAATCTGATCTTTCTTAAGGTCATTGTGAATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTATGGAAAAAATCTGATCTTTCTTAAGGTCATTGTGAATAAC  350

seq1  ATCTGATAAGAAGTGATGTGGGTCAGAATGTAGACTACAGAAAGCATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATAAGAAGTGATGTGGGTCAGAATGTAGACTACAGAAAGCATGCT  400

seq1  CCTGAATACATTATAACATATATCATAGATGAAGCAAACACAAACATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATACATTATAACATATATCATAGATGAAGCAAACACAAACATTTC  450

seq1  ATTCTACTCCAGGATGTAAGTGAGTTTTAAATCTATCTCATTGCCTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTCCAGGATGTAAGTGAGTTTTAAATCTATCTCATTGCCTCACC  500

seq1  CAGAAATTACAGCAAGAATGCCAGTGGGAATGTGTTTTGTTTTTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTACAGCAAGAATGCCAGTGGGAATGTGTTTTGTTTTTTTCTTT  550

seq1  CTTTTTTTTCCCCACCATAAGCAGTAAGATTTGTGTTTGCTGAATATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTCCCCACCATAAGCAGTAAGATTTGTGTTTGCTGAATATTGG  600

seq1  ACTGGGTTTATTTTTAATTGTTCTAAGACTCTTGTTAAATGCCAATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTTATTTTTAATTGTTCTAAGACTCTTGTTAAATGCCAATGGAT  650

seq1  CTCTCCAGTCTGGAGTGCAATGAATAAATGAGTCCCCATTCGGTTTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGTCTGGAGTGCAATGAATAAATGAGTCCCCATTCGGTTTGTCC  700

seq1  TGAGCTTGAAGCACACAGTGTCCCGAACATCCTTTAGCTCTGTTAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTGAAGCACACAGTGTCCCGAACATCCTTTAGCTCTGTTAATTTT  750

seq1  CCCCCACCGAGTAGCAGAAATTGCACATTCTGTGTTTTTGTACTTTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCGAGTAGCAGAAATTGCACATTCTGTGTTTTTGTACTTTCTGT  800

seq1  TCAAATTTTATAGCATCTTAATAGTTCTTGCAATTTCGGTACACACACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTTATAGCATCTTAATAGTTCTTGCAATTTCGGTACACACACAG  850

seq1  CACAACTTTTAGAAATTCAATTTCCCGAGGCTGCTGCTGAGATGAGGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTTTAGAAATTCAATTTCCCGAGGCTGCTGCTGAGATGAGGTTA  900

seq1  TATATGTTTTTCTAACTGTAAATGTACTTAAAAATTTAAAACCTCCCAAA  950
      ||||||||||||| ||||||||||||||| ||||||||||||||||| ||
seq2  TATATGTTTTTCT-ACTGTAAATGTACTT-AAAATTTAAAACCTCCC-AA  947

seq1  CTCATTTTGAGTTTTATAATTCAAAAGTCTCCTCAGTTTATTCATGTCAA  1000
      ||||||||||||| |   |||| ||||||| |||||||||||||||||||
seq2  CTCATTTTGAGTTAT---ATTC-AAAGTCT-CTCAGTTTATTCATGTCAA  992

seq1  TAAATGAGGCAATATTGATTTTAGTTTTGAACTAATTCAGTTTTT  1045
      | ||||||   ||| ||| ||||| |||| ||||  |||||||||
seq2  T-AATGAG--CATA-TGA-TTTAG-TTTGGACTA--TCAGTTTTT  1029