BAC Information

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BAC

Clone NameB6Ng01-040N03
Chromosome10 (Build37)
Map Location 127,752,975 - 127,885,885
singlet/doubletdoublet
Overlap geneUsp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41
Upstream geneArhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a
Downstream geneSmarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040N03.bB6Ng01-040N03.g
ACCDH867671DH867672
length247220
definitionDH867671|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N03, 5' end.DH867672|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,752,975 - 127,753,221)(127,885,666 - 127,885,885)
sequence
actgtgtagcctggggtacccttgacctcgtgatctgtctgcctcagcct
ctagagtgccatgactgcaggtgtaattacagcccatttccccttcatct
gcctctccgttagtgttcttattcttgggctctcctatagaatgccggga
agggtcatgatgaatctagagaggcttttcgaataaatggcatcagaaga
catatatatatatatatatatatatatatgtatgtatgtatgtatgt
cattcactatcatgatttccaagactggtcctctacttctagctcttcat
tagctccttcaataaactattcagcagtcagccctcgaaacaggaagagg
ctagaacaggaagatcacatgagaagagagaaaaaaggcttttttttttt
aatctaggcaatttgaaaagaggagggagagggagagagagagagagaga
gagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127752975_127753221
seq2: B6Ng01-040N03.b_49_295

seq1  ACTGTGTAGCCTGGGGTACCCTTGACCTCGTGATCTGTCTGCCTCAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAGCCTGGGGTACCCTTGACCTCGTGATCTGTCTGCCTCAGCCT  50

seq1  CTAGAGTGCCATGACTGCAGGTGTAATTACAGCCCATTTCCCCTTCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTGCCATGACTGCAGGTGTAATTACAGCCCATTTCCCCTTCATCT  100

seq1  GCCTCTCCGTTAGTGTTCTTATTCTTGGGCTCTCCTATAGAATGCCGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCCGTTAGTGTTCTTATTCTTGGGCTCTCCTATAGAATGCCGGGA  150

seq1  AGGGTCATGATGAATCTAGAGAGGCTTTTCGAATAAATGGCATCAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATGATGAATCTAGAGAGGCTTTTCGAATAAATGGCATCAGAAGA  200

seq1  CATATATATATATATATATATATATATATGTATGTATGTATGTATGT  247
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATATATATATATATATATATATGTATGTATGTATGTATGT  247

seq1: chr10_127885666_127885885
seq2: B6Ng01-040N03.g_74_293 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCCT  50

seq1  CTTTTCAAATTGCCTAGATTAAAAAAAAAAAGCCTTTTTTCTCTCTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAATTGCCTAGATTAAAAAAAAAAAGCCTTTTTTCTCTCTTCTC  100

seq1  ATGTGATCTTCCTGTTCTAGCCTCTTCCTGTTTCGAGGGCTGACTGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCTTCCTGTTCTAGCCTCTTCCTGTTTCGAGGGCTGACTGCTGA  150

seq1  ATAGTTTATTGAAGGAGCTAATGAAGAGCTAGAAGTAGAGGACCAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTATTGAAGGAGCTAATGAAGAGCTAGAAGTAGAGGACCAGTCTT  200

seq1  GGAAATCATGATAGTGAATG  220
      ||||||||||||||||||||
seq2  GGAAATCATGATAGTGAATG  220