BAC Information

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BAC

Clone NameB6Ng01-040O14
Chromosome10 (Build37)
Map Location 6,096,340 - 6,199,209
singlet/doubletdoublet
Overlap geneMthfd1l
Upstream geneSyne1, Esr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12
Downstream genePlekhg1, Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040O14.bB6Ng01-040O14.g
ACCDH867735DH867736
length4741,084
definitionDH867735|Mus musculus domesticus DNA, BAC clone: B6Ng01-040O14, 5' end.DH867736|Mus musculus domesticus DNA, BAC clone: B6Ng01-040O14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,198,730 - 6,199,209)(6,096,340 - 6,097,441)
sequence
aaatcccagcaaccacatggtggctcacaaccacccgtaatgaaatctga
cgccctcttctggggtatctgaagacagctactgtgtacttacatataat
tataaataaatcttttgagggagagagatagagagaaggagagagagaga
gagaggagaaaatgcccagtggtgcaaagcatcactcaacacaggagttc
ctgatggaaggtaaagccagctgcctgctagctaaagggcaagtttgcac
tgtgcccagcctctagtacagtttgcaggcttttgctttgacaaaaatat
gtgcatggtcttggtgaggaggcaactctggccccagccacaggggctgg
ttttgggctctgtaatgcaaattggaataggaagagaagctttgaaaatc
actggtggctgctgtgtgcccgtgggaccacagggaatatgaagaagcta
catttgggggtgaggggtggggtg

gaattctgtagtacactttcctttcagagaagagtcctaaccgttagcca
tgcagccaagccttttgggatctgcactaggcttcttctgtcctctctct
ggtctctgtctcaccttatccctggaggctcaaggatcaaacttcagagc
caataggacaaccctcgccgggcggctgtgcacgcctttaatcccagcac
ttgggaggctgaggcaggcagatttcagagttcgaggccagcctggtcta
cagagtaagttccaggacagtcagggttactcagagaaaccctgtctcga
aaaaaaaaaaaaaacaaaaacaaaaacaaaaaagaaaagaaagaaaagaa
aaggaaaggaaagaaatggaaggaaggaaggaaggaagaaaggaaggaag
gaaagaaggaaggaaggaaagaaggaaggaaggaaggacaacccttggac
ctatgcacggttttcccacctcctcatctgcacacacagtcagtccagta
tctgactcttcctcctctgactcacagacttctgctcagggggcaggatg
ccaggtcctcccctaccaggagagcacctgggcctggaatttggtcttct
ggtaccctctcctttcagcaccactctcctttcagcattgatgaaagcat
ccatttgacaaagaaagacacttaagacacaagggaaaggaatggagaca
ggctgctcccagagagagaaaaagaaaccagagggcagtggcttttgttc
ctcaaatagcctcacaccgggctccctttgcttctaagaagcttgaaggg
gcctctcgctgggactggctggaatgccttcctgttgagtcttgacctgg
atggcagatttgtagaatctctgtaccagagcagaggccagtccccggtc
attaggacaatggatggtggtacatggaagccaggacatggatggtgtac
aattgaagcagggctatgacttacttttactcagctttcccaagcggttc
ttgggcagcccgatctgatccctcgactttgggagactggttttagcaac
tagcatctaagtcaatagtaatttgacttggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_6198730_6199209
seq2: B6Ng01-040O14.b_51_530 (reverse)

seq1  CACCCCACCCCTCACCCCCAAATGTAGCTTCTTCATATTCCCTGTGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCCCTCACCCCCAAATGTAGCTTCTTCATATTCCCTGTGGTCC  50

seq1  CACGGGCACACAGCAGCCACCAGTGATTTTCAAAGCTTCTCTTCCTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGCACACAGCAGCCACCAGTGATTTTCAAAGCTTCTCTTCCTATTC  100

seq1  CAATTTGCATTACAGAGCCCAAAACCAGCCCCTGTGGCTGGGGCCAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGCATTACAGAGCCCAAAACCAGCCCCTGTGGCTGGGGCCAGAGT  150

seq1  TGCCTCCTCACCAAGACCATGCACATATTTTTGTCAAAGCAAAAGCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTCACCAAGACCATGCACATATTTTTGTCAAAGCAAAAGCCTGC  200

seq1  AAACTGTACTAGAGGCTGGGCACAGTGCAAACTTGCCCTTTAGCTAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTACTAGAGGCTGGGCACAGTGCAAACTTGCCCTTTAGCTAGCAG  250

seq1  GCAGCTGGCTTTACCTTCCATCAGGAACTCCTGTGTTGAGTGATGCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGCTTTACCTTCCATCAGGAACTCCTGTGTTGAGTGATGCTTTG  300

seq1  CACCACTGGGCATTTTCTCCTCTCTCTCTCTCTCTCCTTCTCTCTATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGGGCATTTTCTCCTCTCTCTCTCTCTCTCCTTCTCTCTATCTC  350

seq1  TCTCCCTCAAAAGATTTATTTATAATTATATGTAAGTACACAGTAGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCAAAAGATTTATTTATAATTATATGTAAGTACACAGTAGCTGT  400

seq1  CTTCAGATACCCCAGAAGAGGGCGTCAGATTTCATTACGGGTGGTTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGATACCCCAGAAGAGGGCGTCAGATTTCATTACGGGTGGTTGTGA  450

seq1  GCCACCATGTGGTTGCTGGGATTTGAATTC  480
      ||||||||||||||||||||||||||||||
seq2  GCCACCATGTGGTTGCTGGGATTTGAATTC  480


seq1: chr10_6096340_6097441
seq2: B6Ng01-040O14.g_70_1153

seq1  GAATTCTGTAGTACACTTTCCTTTCAGAGAAGAGTCCTAACCGTTAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGTACACTTTCCTTTCAGAGAAGAGTCCTAACCGTTAGCCA  50

seq1  TGCAGCCAAGCCTTTTGGGATCTGCACTAGGCTTCTTCTGTCCTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCAAGCCTTTTGGGATCTGCACTAGGCTTCTTCTGTCCTCTCTCT  100

seq1  GGTCTCTGTCTCACCTTATCCCTGGAGGCTCAAGGATCAAACTTCAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGTCTCACCTTATCCCTGGAGGCTCAAGGATCAAACTTCAGAGC  150

seq1  CAATAGGACAACCCTCGCCGGGCGGCTGTGCACGCCTTTAATCCCAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGACAACCCTCGCCGGGCGGCTGTGCACGCCTTTAATCCCAGCAC  200

seq1  TTGGGAGGCTGAGGCAGGCAGATTTCAGAGTTCGAGGCCAGCCTGGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGCTGAGGCAGGCAGATTTCAGAGTTCGAGGCCAGCCTGGTCTA  250

seq1  CAGAGTAAGTTCCAGGACAGTCAGGGTTACTCAGAGAAACCCTGTCTCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAAGTTCCAGGACAGTCAGGGTTACTCAGAGAAACCCTGTCTCGA  300

seq1  AAAAAAAAAAAAAACAAAAACAAAAACAAAAAAGAAAAGAAAGAAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAACAAAAACAAAAACAAAAAAGAAAAGAAAGAAAAGAA  350

seq1  AAGGAAAGGAAAGAAATGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGGAAAGAAATGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGAAG  400

seq1  GAAAGAAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGACAACCCTTGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGACAACCCTTGGAC  450

seq1  CTATGCACGGTTTTCCCACCTCCTCATCTGCACACACAGTCAGTCCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCACGGTTTTCCCACCTCCTCATCTGCACACACAGTCAGTCCAGTA  500

seq1  TCTGACTCTTCCTCCTCTGACTCACAGACTTCTGCTCAGGGGGCAGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCTTCCTCCTCTGACTCACAGACTTCTGCTCAGGGGGCAGGATG  550

seq1  CCAGGTCCTCCCCTACCAGGAGAGCACCTGGGCCTGGAATTTGGTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCCTCCCCTACCAGGAGAGCACCTGGGCCTGGAATTTGGTCTTCT  600

seq1  GGTACCCTCTCCTTTCAGCACCACTCTCCTTTCAGCATTGATGAAAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCTCTCCTTTCAGCACCACTCTCCTTTCAGCATTGATGAAAGCAT  650

seq1  CCATTTGACAAAGAAAGACACTTAAGACACAAGGGAAAGGAATGGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGACAAAGAAAGACACTTAAGACACAAGGGAAAGGAATGGAGACA  700

seq1  GGCTGCTCCCAGAGAGAGAAAAAGAAACCAGAGGGCAGTGGCTTTTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCCCAGAGAGAGAAAAAGAAACCAGAGGGCAGTGGCTTTTGTTC  750

seq1  CTCAAATAGCCTCACACCGGGCTCCCTTTGCTTCTAAGAAGCTTGAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATAGCCTCACACCGGGCTCCCTTTGCTTCTAAGAAGCTTGAAGGG  800

seq1  GCCTCTCGCTGGGACTGGCTGGAATGCCTTCCTGTTGAGTCTTGACCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCGCTGGGACTGGCTGGAATGCCTTCCTGTTGAGTCTTGACCTGG  850

seq1  ATGGCAGATTTGTAGAATCTCTGTACCAGAGCAGAGGCCAGTCCCCGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGATTTGTAGAATCTCTGTACCAGAGCAGAGGCCAGTCCCCGGTC  900

seq1  ATTAGGACAATGGATGGTGGTACAATGGAAGCCAGGACAATGGATGGTGG  950
      ||||||||||||||||||||||| |||||||||||||| ||||||||| |
seq2  ATTAGGACAATGGATGGTGGTAC-ATGGAAGCCAGGAC-ATGGATGGT-G  947

seq1  TACAATGGAAGCCAGGGCTATGACTTAACTTTTACCTCAAGCTTTTCCCA  1000
      |||||| |||| |||||||||||||| ||||||| ||| |||||| || |
seq2  TACAATTGAAG-CAGGGCTATGACTT-ACTTTTA-CTC-AGCTTTCCCAA  993

seq1  GCGGGTCTTGGGGCAGCCCGATCTGATCCCTCGACTTTTGGAAGAACTGG  1050
      |||| |||| |||||||||||||||||||||||||||| |||   |||||
seq2  GCGGTTCTT-GGGCAGCCCGATCTGATCCCTCGACTTTGGGA--GACTGG  1040

seq1  TTTTTAGCAACCTAGCATCTTAAAGTCAAATTAGGTAATTTGACTTGTGC  1100
       ||||||||| |||||||||  |||||||  || ||||||||||||| ||
seq2  -TTTTAGCAA-CTAGCATCT--AAGTCAA--TA-GTAATTTGACTTG-GC  1082

seq1  CT  1102
      ||
seq2  CT  1084


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