BAC Information

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BAC

Clone NameB6Ng01-041E03
Chromosome10 (Build37)13 (Build37)
Map Location 92,685,188 - 92,685,760101,551,725 - 101,552,241
singlet/doubletsingletsinglet
Overlap genePctk2
Upstream geneLOC667203, LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314
Downstream geneElk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041E03.bB6Ng01-041E03.g
ACCDH867969DH867970
length567763
definitionDH867969|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E03, 5' end.DH867970|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,685,188 - 92,685,760)(101,551,725 - 101,552,241)
sequence
tgcaatgaccactattacctaaaagattatatacctgtctctgaaatgac
tattacctaacagactatataccgaattttgagatgactgctattaccta
aaagagtatatactgaattctgagataaccgctattacctaagagattat
ataccaaattctgaaatgaccgctgttacctaaaatataatataccaaat
tttgcaatgaccactattacctaagagattatttaccgaattctgaaatg
actgctattacctaaaagaatatacacctgactctgaaatgaccgctatt
acttaaaagaatatatatatatactgaattctacaatgaccactattacc
taaaagattatatacctgtctctgaaatgactattacctaacagactata
tactgaattttgagatgaccactattacctaaaagactatataccgaatt
ctgaaatgactgctattgcctaaaagagtatatacctgactctgaaatga
ccgctattacttaaaagaatatatatgtgtatatatatatatatatatat
gtatgtatgtatgtatg
gaattcagtctgcccactggatgtcccaccttctattctaacctttacta
taggccatagggttttgttttgctttgttttgttgacaagtgatgtatcc
attcaatacataagatagtctctctacagatagtctgtggtttgtttgtt
gttgttgtttttagagacatgagggcagtaatatttaaaatttatcattg
aaaaagatgtataattcttgatattttgggactttgtggtgtttattttc
tttgtcctactgagtataactgctatcctgctgccatttatttcccatga
gccacttgaccatgcttgcccttctccaagcaaagtatttttctagtatc
ttctatggggctggtttggattgatttagcctggttttatcatggaaaga
ttttatttctccttcgactagatggggagttttttcaagcaaagtagtct
aggatagcaatcatgttctcctaggacttgaagcaccttgctctaagctc
ttttgatttttaaacacaaagaaagcagctcttaattttgatgaaccagt
ctttatatgtgcccttttcttctctatttttgtatgtttaaatttttaaa
aatttgtttgttttatttgtatgagtaagtacactgtagctatctccaga
cacactacaagagggcatcggatcccatttacaaatggttgtgagccacc
atgtatttgctgggaattgaactcaggaccttaggaagagcagtcagtgt
tcttaaccgtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_92685188_92685760
seq2: B6Ng01-041E03.b_46_618

seq1  GAATTCTGCAATGACCACTATTACCTAAAAGATTATATACCTGTCTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAATGACCACTATTACCTAAAAGATTATATACCTGTCTCTGA  50

seq1  AATGACTATTACCTAACAGACTATATACCGAATTTTGAGATGACTGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTATTACCTAACAGACTATATACCGAATTTTGAGATGACTGCTAT  100

seq1  TACCTAAAAGAGTATATACTGAATTCTGAGATAACCGCTATTACCTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAAAGAGTATATACTGAATTCTGAGATAACCGCTATTACCTAAGA  150

seq1  GATTATATACCAAATTCTGAAATGACCGCTGTTACCTAAAATATAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATACCAAATTCTGAAATGACCGCTGTTACCTAAAATATAATATA  200

seq1  CCAAATTTTGCAATGACCACTATTACCTAAGAGATTATTTACCGAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTTGCAATGACCACTATTACCTAAGAGATTATTTACCGAATTCT  250

seq1  GAAATGACTGCTATTACCTAAAAGAATATACACCTGACTCTGAAATGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACTGCTATTACCTAAAAGAATATACACCTGACTCTGAAATGACC  300

seq1  GCTATTACTTAAAAGAATATATATATATACTGAATTCTACAATGACCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTACTTAAAAGAATATATATATATACTGAATTCTACAATGACCACT  350

seq1  ATTACCTAAAAGATTATATACCTGTCTCTGAAATGACTATTACCTAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTAAAAGATTATATACCTGTCTCTGAAATGACTATTACCTAACAG  400

seq1  ACTATATACTGAATTTTGAGATGACCACTATTACCTAAAAGACTATATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATACTGAATTTTGAGATGACCACTATTACCTAAAAGACTATATAC  450

seq1  CGAATTCTGAAATGACTGCTATTGCCTAAAAGAGTATATACCTGACTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTCTGAAATGACTGCTATTGCCTAAAAGAGTATATACCTGACTCTG  500

seq1  AAATGACCGCTATTACTTAAAAGAATATATATGTGTATATATATATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCGCTATTACTTAAAAGAATATATATGTGTATATATATATATAT  550

seq1  ATATATGTATGTATGTATGTATG  573
      |||||||||||||||||||||||
seq2  ATATATGTATGTATGTATGTATG  573

seq1: chr13_101551725_101552241
seq2: B6Ng01-041E03.g_762_816 (reverse)

seq1  ACTGACTGCTCTTCCTACAAAAGAAAATGTCAGTTATTTTAGAAACATCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAACATCTACCATCGGTGTCCATAAAGACCAGTTAACAAACATCAAACAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGCTCAGGGCAGAAGTTCACCAAGAAAGCAAGGTTTGCAAAGTCATAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGCTCTTCAGACTGTTGACAGAGCGACCATCTGGTTAGCCAGAACTAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGCAGCTCACGCCCTGTACCCATCATCACCTCAGATCTTTTCACTCACAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTAAGTTTTGTGATGCAGAAAAAATAAATTGTAGATCTGCTGCTCCATGT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TATAAACTCAAAACACCCACACAGTGTAACACCAAACCAAGTTCTGAGCG  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGAACACAAAGCTTTAGCAGTATTAACAAGAATAAAAACGAAGACAGC  400
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTTTCGAACCAGATTATCTTACTGAAGACTACTTTAGAAAATACAGAT  450
                                                        
seq2  --------------------------------------------------  0

seq1  GTGGGCTGGAGAGATGGCTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCA  500
                    || ||||||||||  ||||||||||||||| |||||
seq2  ------------ACTGACTGCTCTTCCTAAGGTCCTGAGTTCAATTCCCA  38

seq1  GCAACCACATGGTGGCT  517
      ||||  |||||||||||
seq2  GCAAATACATGGTGGCT  55