BAC Information

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BAC

Clone NameB6Ng01-041E07
Chromosome10 (Build37)
Map Location 77,244,019 - 77,373,104
singlet/doubletdoublet
Overlap geneLOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2
Upstream genePcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517
Downstream gene1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041E07.bB6Ng01-041E07.g
ACCDH867977DH867978
length272740
definitionDH867977|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E07, 5' end.DH867978|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,372,833 - 77,373,104)(77,244,019 - 77,244,757)
sequence
aaggcactgggtagacacaggctgtttgtccttgcagaacctgcacactc
atgatccaaaggagttgacccgtgacctgaagctgtctactgaatggcag
gtggtagaccggcggatccctctgtatgcgaaccacaagaccatcctcca
gaaggtggcctcactgtttggagctcacttctgactgtggcttctgggcc
acaatggccccccaagacttggactgctgtcttgggctggatggctggtt
ggggtactgggttggggtgggt
gaattcctgtgaaactacaaccctgagtttctcccagggtttcaggacaa
gggctcgccctaccctcctctccaagatattcctctttctcaaaatgaaa
gcctttcagaggatttatcagagtcactctgtgagacccaagacaggaaa
gtcctggcccagacccagaggaggtagaacccggatcccagtatcagagc
atggaacaaggggacagaagctgtggatctgtgtaaagactccaagcctc
acaactgaagatacagagatagtggaagaagatgacagtcactatggaga
cataatcgatcagaagaagttttattaatgtgcattagtcgagagtagta
cagctgaccacagatgcagggtcatccagtcagggagggaagaggaagcc
agctctcctctgacctggtgaggaggaacctgctgggccttctaaggggt
cgagctacactcaggtttctcgtcagactgtacacatctttcttctgagc
tgtacctccatgagtagcaaccacaggctgatggaggtgtggttctgtgc
cctgctgccttcgtgggtcctggccctcagcagctggacttctgtccaca
gcaggcctgtctgcagcaggcagggcggcacagcagggacacactagagg
ttgggccacagcagctggggctggcaggaggaggcacagcaggatgaggt
gggctcacagcaggcaggtctgctcactgggtgacacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77372833_77373104
seq2: B6Ng01-041E07.b_54_325 (reverse)

seq1  ACCCACCCCAACCCAGTACCCCAACCAGCCATCCAGCCCAAGACAGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCCAACCCAGTACCCCAACCAGCCATCCAGCCCAAGACAGCAGT  50

seq1  CCAAGTCTTGGGGGGCCATTGTGGCCCAGAAGCCACAGTCAGAAGTGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTTGGGGGGCCATTGTGGCCCAGAAGCCACAGTCAGAAGTGAGC  100

seq1  TCCAAACAGTGAGGCCACCTTCTGGAGGATGGTCTTGTGGTTCGCATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACAGTGAGGCCACCTTCTGGAGGATGGTCTTGTGGTTCGCATACA  150

seq1  GAGGGATCCGCCGGTCTACCACCTGCCATTCAGTAGACAGCTTCAGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATCCGCCGGTCTACCACCTGCCATTCAGTAGACAGCTTCAGGTCA  200

seq1  CGGGTCAACTCCTTTGGATCATGAGTGTGCAGGTTCTGCAAGGACAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCAACTCCTTTGGATCATGAGTGTGCAGGTTCTGCAAGGACAAACA  250

seq1  GCCTGTGTCTACCCAGTGCCTT  272
      ||||||||||||||||||||||
seq2  GCCTGTGTCTACCCAGTGCCTT  272

seq1: chr10_77244019_77244757
seq2: B6Ng01-041E07.g_70_809

seq1  GAATTCCTGTGAAACTACAACCCTGAGTTTCTCCCAGGGTTTCAGGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGAAACTACAACCCTGAGTTTCTCCCAGGGTTTCAGGACAA  50

seq1  GGGCTCGCCCTACCCTCCTCTCCAAGATATTCCTCTTTCTCAAAATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCGCCCTACCCTCCTCTCCAAGATATTCCTCTTTCTCAAAATGAAA  100

seq1  GCCTTTCAGAGGATTTATCAGAGTCACTCTGTGAGACCCAAGACAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCAGAGGATTTATCAGAGTCACTCTGTGAGACCCAAGACAGGAAA  150

seq1  GTCCTGGCCCAGACCCAGAGGAGGTAGAACCCGGATCCCAGTATCAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGCCCAGACCCAGAGGAGGTAGAACCCGGATCCCAGTATCAGAGC  200

seq1  ATGGAACAAGGGGACAGAAGCTGTGGATCTGTGTAAAGACTCCAAGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACAAGGGGACAGAAGCTGTGGATCTGTGTAAAGACTCCAAGCCTC  250

seq1  ACAACTGAAGATACAGAGATAGTGGAAGAAGATGACAGTCACTATGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGAAGATACAGAGATAGTGGAAGAAGATGACAGTCACTATGGAGA  300

seq1  CATAATCGATCAGAAGAAGTTTTATTAATGTGCATTAGTCGAGAGTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCGATCAGAAGAAGTTTTATTAATGTGCATTAGTCGAGAGTAGTA  350

seq1  CAGCTGACCACAGATGCAGGGTCATCCAGTCAGGGAGGGAAGAGGAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACCACAGATGCAGGGTCATCCAGTCAGGGAGGGAAGAGGAAGCC  400

seq1  AGCTCTCCTCTGACCTGGTGAGGAGGAACCTGCTGGGCCTTCTAAGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCTCTGACCTGGTGAGGAGGAACCTGCTGGGCCTTCTAAGGGGT  450

seq1  CGAGCTACACTCAGGTTTCTCGTCAGACTGTACACATCTTTCTTCTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTACACTCAGGTTTCTCGTCAGACTGTACACATCTTTCTTCTGAGC  500

seq1  TGTACCTCCATGAGTAGCAACCACAGGCTGATGGAGGTGTGGTTCTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTCCATGAGTAGCAACCACAGGCTGATGGAGGTGTGGTTCTGTGC  550

seq1  CCTGCTGCCTTCGTGGGTCCTGGCCCTCAGCAGCTGGACTTCTGTCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCCTTCGTGGGTCCTGGCCCTCAGCAGCTGGACTTCTGTCCACA  600

seq1  GCAGGCCTGTCTGCAGCAGGCAGGGCGGCACAGCAGGGACACACTAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCTGTCTGCAGCAGGCAGGGCGGCACAGCAGGGACACACTAGAGG  650

seq1  TTGGGCCACAGCAGCT-GGGCTGGCAGGAGGAGGCACAGCAGGAGGAGGT  699
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  TTGGGCCACAGCAGCTGGGGCTGGCAGGAGGAGGCACAGCAGGATGAGGT  700

seq1  GGGCACACAGCAGGCAGGTCTGCACACTGGGTGACACAGC  739
      |||| |||||||||||||||||| ||||||||||||||||
seq2  GGGCTCACAGCAGGCAGGTCTGCTCACTGGGTGACACAGC  740