BAC Information

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BAC

Clone NameB6Ng01-041E14
Chromosome5 (Build37)10 (Build37)
Map Location 22,335,110 - 22,336,196104,054,931 - 104,055,671
singlet/doubletsingletsinglet
Overlap geneLhfpl3
Upstream geneSlc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174
Downstream geneEG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041E14.bB6Ng01-041E14.g
ACCDH867990DH867991
length1,071921
definitionDH867990|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E14, 5' end.DH867991|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,335,110 - 22,336,196)(104,054,931 - 104,055,671)
sequence
gaattcaacttcagccctcaaaactacaatgctaactctgctgtgtagca
gtgtggaattggatgcaatgagcctgttttggatcactgcttaactgctg
aggtcaataagaccttgtttgtgcatctagagcttatgcataaatctaac
agcataaacagattctcttgccaatttacattctgaacaccaactctgca
tttacaaattgtttctgtcttctgaaatagggtaagaaaaagaacaattc
aactgattgcacatagtgtctccctaacaattttcttaaaaatatcaggc
cagctgtgtttcatttcagaattccctatcctcagatctgggcatgattg
tgtggtgttccgaatacagaggcacccaagaaactctaggaagaacgtaa
caatattcccctcctctagcatacgtttaagaattcacactgaaattgct
cttgcagagctcttaaacaactcaatgccaatttcctcttcttattctgg
aaacactgcatgttagttagaaaaagggggaattctaattatgacagtct
ttcttacatgtgactgcgtgatttgtttgcaccagacccctgattctcca
aaagtcacagcaaaggccaaagcttcagtctcaaagggagaagaatgctt
tggtgtgacacagttctctgtcactgaaatagtagaattttacagcgtgc
cattttgaagaggtgaatggattaatattaaatgttccatctttactgaa
acacaatgtttattgggaagcgtgtctttctctaggatttgagagacctc
cattttaagtcacattttctgctgaaaagaaataaatctggctaggtggt
caaatggaagtagaaatatgggtgtctgcaagaagttatctacaaaaact
ctcaggtatactatatataggaagccttgttggatgttttatagtattac
aggaatattaaggccatggaaaatgattctaggtgctaaaacgcagagac
attttttgcatgtaagtgtgagagttaaagtcacgtaagttctcccctat
agtagaaatgaaacgaggaag
tactactcttgtgctgtaaagtcttggttaaattatttaatatttgctta
atattcaatatttcaagcttcaaacacacacacatatataatagagataa
ttacaatatctattttagagttgttacaaggtttaaatgaaataataagt
ttagaagtatttgaattagcacgtaatttatattgtactaaatggagaga
agctggaagcaatcccactaaaatcagggactaaacaaggctgcccactt
tctccctacctattctatatagtacttgtagtcctagtcagagcaattag
acaacaaaagaagatcaagggggatacaaattggaaaggaagaagtcaaa
atatcactatttgcagatgatatgatagtatatataagtgactctaaaaa
ttccaccagagaactcctaaacctgataaacagcttcagtgaagtagctg
gatataaaattaactcaaacaaatcaatggcctttctctacataaaggat
aaacaggctgagaaagaaattagggaaacaacactcttcacaatagtcac
aaatagtataaaataccttggtgtgactaactaaggaagtcaaagatctg
tatgataagaactttaagcctctgaagaaagaaatcaaagaagatctcag
aagatggaaagatctcccatgctcatggattggcagaatcaatatagtaa
aaaatcgctatcctgccaaaagcaatctacagattcaatgcaatccccat
caaaattcaactcaattcttcactgagttagaaagcgcaatttgtaattt
catatgggataacaaaacctagaatagcaaaaatattctcaacaacaaaa
actctgggaggaatcaccatgcctgacctcaagctgtactacagagcaat
tggatattaactgctggtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_22335110_22336196
seq2: B6Ng01-041E14.b_31_1101 (reverse)

seq1  CTTCCTCGGTTTCATTTCCTATCTATGAGGTGAGGAATCTCTACTGTGAA  50
      ||||||| ||||||||| ||| |||| ||| ||| | |   ||| ||| |
seq2  CTTCCTC-GTTTCATTT-CTA-CTAT-AGGGGAGAACT---TAC-GTG-A  41

seq1  CTGTAAACTCTCACACTTACATGCAAAAATATTGTCTCTTGCTGTTTTTA  100
      || | |||||||||||||||||||||||  | |||||| |||   |||||
seq2  CT-TTAACTCTCACACTTACATGCAAAA--AATGTCTC-TGC--GTTTTA  85

seq1  GCATCTAGAATCATTTTTCATGGACCTTATATATTCCTGTAATACTATAA  150
      ||| ||||||||||||| ||||| ||||| ||||||||||||||||||||
seq2  GCACCTAGAATCATTTTCCATGG-CCTTA-ATATTCCTGTAATACTATAA  133

seq1  AACATCCAACAAGGCTTCCTATATATAGTATTACCTGAGAGTTTTTGTAG  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AACATCCAACAAGGCTTCCTATATATAGTA-TACCTGAGAGTTTTTGTAG  182

seq1  ATAACTTCTTGCAGACA-CCATATTTCTACTTTCCATTTGACCACCTAGC  249
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  ATAACTTCTTGCAGACACCCATATTTCTAC-TTCCATTTGACCACCTAGC  231

seq1  CAGATTTATTTCTTTTCAGCAGAAAATGTGACTTAAAATGGAGGTCTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTATTTCTTTTCAGCAGAAAATGTGACTTAAAATGGAGGTCTCTC  281

seq1  AAATCCTAGAG-AAGACACGCTTCCCAATAAACATTGTGTTTCAGTAAAG  348
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTAGAGAAAGACACGCTTCCCAATAAACATTGTGTTTCAGTAAAG  331

seq1  ATGGAACATTTAATATTAATCCATTCACCTCTTCAAAATGGCACGCTGT-  397
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGGAACATTTAATATTAATCCATTCACCTCTTCAAAATGGCACGCTGTA  381

seq1  AAATTCTACTATTTCAGTGACAGAGAACTGTGTCACACCAAAGCATTCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTACTATTTCAGTGACAGAGAACTGTGTCACACCAAAGCATTCTT  431

seq1  CTCCCTTTGAGACTGAAGCTTTGGCCTTTGCTGTGACTTTTGGAGAATCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTGAGACTGAAGCTTTGGCCTTTGCTGTGACTTTTGGAGAATCA  481

seq1  GGGGTCTGGTGCAAACAAATCACGCAGTCACATGTAAGAAAGACTGTCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTGGTGCAAACAAATCACGCAGTCACATGTAAGAAAGACTGTCAT  531

seq1  AATTAGAATTCCCCCTTTTTCTAACTAACATGCAGTGTTTCCAGAATAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAATTCCCCCTTTTTCTAACTAACATGCAGTGTTTCCAGAATAAG  581

seq1  AAGAGGAAATTGGCATTGAGTTGTTTAAGAGCTCTGCAAGAGCAATTTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAATTGGCATTGAGTTGTTTAAGAGCTCTGCAAGAGCAATTTCA  631

seq1  GTGTGAATTCTTAAACGTATGCTAGAGGAGGGGAATATTGTTACGTTCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAATTCTTAAACGTATGCTAGAGGAGGGGAATATTGTTACGTTCTT  681

seq1  CCTAGAGTTTCTTGGGTGCCTCTGTATTCGGAACACCACACAATCATGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGTTTCTTGGGTGCCTCTGTATTCGGAACACCACACAATCATGCC  731

seq1  CAGATCTGAGGATAGGGAATTCTGAAATGAAACACAGCTGGCCTGATATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTGAGGATAGGGAATTCTGAAATGAAACACAGCTGGCCTGATATT  781

seq1  TTTAAGAAAATTGTTAGGGAGACACTATGTGCAATCAGTTGAATTGTTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAAATTGTTAGGGAGACACTATGTGCAATCAGTTGAATTGTTCT  831

seq1  TTTTCTTACCCTATTTCAGAAGACAGAAACAATTTGTAAATGCAGAGTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTACCCTATTTCAGAAGACAGAAACAATTTGTAAATGCAGAGTTG  881

seq1  GTGTTCAGAATGTAAATTGGCAAGAGAATCTGTTTATGCTGTTAGATTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGAATGTAAATTGGCAAGAGAATCTGTTTATGCTGTTAGATTTA  931

seq1  TGCATAAGCTCTAGATGCACAAACAAGGTCTTATTGACCTCAGCAGTTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAGCTCTAGATGCACAAACAAGGTCTTATTGACCTCAGCAGTTAA  981

seq1  GCAGTGATCCAAAACAGGCTCATTGCATCCAATTCCACACTGCTACACAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGATCCAAAACAGGCTCATTGCATCCAATTCCACACTGCTACACAG  1031

seq1  CAGAGTTAGCATTGTAGTTTTGAGGGCTGAAGTTGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTAGCATTGTAGTTTTGAGGGCTGAAGTTGAATTC  1071

seq1: chr10_104054931_104055671
seq2: B6Ng01-041E14.g_271_1003 (reverse)

seq1  AGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGTTTTAGGTCC  50
      ||||||| ||||||  |||| ||||||||||||||||||| || ||||| 
seq2  AGTACCA-GCAGTTAATATC-CAATTGCTCTGTAGTACAGCTTGAGGTCA  48

seq1  GGGATGGTGATTCC-ACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTG  99
      || |||||||||||  ||||||    |||| |  ||||||| | ||||||
seq2  GGCATGGTGATTCCTCCCAGAG---TTTTTGTTGTTGAGAATA-TTTTTG  94

seq1  CTATCCTAGGTTTTTTGTTATTCCAGATGAATCTGCCGATTGCCCTTTAT  149
      |||| |||||  ||||||||| ||| |||||  | |  ||||| |||| |
seq2  CTATTCTAGG--TTTTGTTATCCCATATGAAATTACAAATTGCGCTTTCT  142

seq1  AATTCTTTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCT  199
      || ||  |||||||||||||| ||||||||||||||||||||||||||||
seq2  AACTCAGTGAAGAATTGAGTT-GAATTTTGATGGGGATTGCATTGAATCT  191

seq1  GTAGATTGCTTTTGGCAAGATAGCCA-TTTTTACTATATTGATCCTGCCG  248
      ||||||||||||||||| |||||| | |||||||||||||||| ||||| 
seq2  GTAGATTGCTTTTGGCAGGATAGCGATTTTTTACTATATTGATTCTGCCA  241

seq1  ATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTTC  298
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTGATTTC  291

seq1  TTTCTTCAGAGACATGAAGTTCTTGTCATACAGATCTTTCACTTCCTTAG  348
      ||||||||||| | | |||||||| |||||||||||||| ||||||||||
seq2  TTTCTTCAGAGGCTTAAAGTTCTTATCATACAGATCTTTGACTTCCTTAG  341

seq1  TTAGAGTCACGCCAAGGAATTTTATATTATTTGTGGCTATTGAGAAGGGT  398
      ||  |||||| |||||| |||||||| |||||||| |||||| |||| ||
seq2  TT--AGTCACACCAAGGTATTTTATACTATTTGTGACTATTGTGAAGAGT  389

seq1  GTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTGTCCTTTGTGTAGAGAAA  448
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  GTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTATCCTTTATGTAGAGAAA  439

seq1  GCCCATTGACTTGTTTGAGTTAATTTTATATCCAGCTACTTCACTGAAGC  498
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTGATTTGTTTGAGTTAATTTTATATCCAGCTACTTCACTGAAGC  489

seq1  TGTATATTAGGTTTAGGAGTTCTCTGGTTGAATTTTTAGGGTCACTTATA  548
      ||| ||| |||||||||||||||||||| |||||||||| ||||||||||
seq2  TGTTTATCAGGTTTAGGAGTTCTCTGGTGGAATTTTTAGAGTCACTTATA  539

seq1  TATACTATCATATCATCTGCAAAAAGTGATATTTTGACTTCTTCCTTTCC  598
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATACTATCATATCATCTGCAAATAGTGATATTTTGACTTCTTCCTTTCC  589

seq1  AATTTGTAT-CCCCTTGATCTCCTTTTGTTGTCTAATTGCTCTGGCTAGG  647
      ||||||||| ||||||||||| |||||||||||||||||||||| |||||
seq2  AATTTGTATCCCCCTTGATCTTCTTTTGTTGTCTAATTGCTCTGACTAGG  639

seq1  ACTTCAGGTACAATGTTGAATATGTAGGGAGAGAGTGGAAAGCCTTGTCT  697
      ||| || |||| || | ||||| ||||||||| |||||  |||||||| |
seq2  ACTACAAGTACTATATAGAATAGGTAGGGAGAAAGTGGGCAGCCTTGTTT  689

seq1  AGTCCCTGATTTTAGTGGGATTGCTTCAAGCTTCTCACCATTTA  741
      ||||||||||||||||||||||||||| |||||||| |||||||
seq2  AGTCCCTGATTTTAGTGGGATTGCTTCCAGCTTCTCTCCATTTA  733