BAC Information

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BAC

Clone NameB6Ng01-041N14
Chromosome10 (Build37)
Map Location 18,927,613 - 19,017,246
singlet/doubletdoublet
Overlap geneEG637620
Upstream geneCcdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5
Downstream geneOlig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041N14.bB6Ng01-041N14.g
ACCDH868389DH868390
length1,111660
definitionDH868389|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N14, 5' end.DH868390|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,927,613 - 18,928,737)(19,016,588 - 19,017,246)
sequence
gaattcttattccatttggagtttatctttgtaactctgacaagtggaca
tagttttatctttattccaaatatttttctaattgtaccactgtgtttat
tggataatttgttataataaaacctatcattttctataatgaatacctgc
ttaatagtaaaaataaattaaaattatttccacccccccacacacacata
aaaaatcaaaaaacccacattaaagtctttcatcaaaaatcttgcaccaa
aaagaaataatgccacttactacagtttgataagattaagtatcatttat
taaaagatgaaaataaaggaaactgtttcttaatcagagaacaagctcca
tctgtacctaaaagactcaggataaacacgccccgccccaccccaccccc
caccacgctctagacgttctatccgtgagctttgcattccttctgttcat
gtgctgatgacgctttgtgttcaagacaaaggctgtgctgtggttgaagg
tcagggctgggctgcgatctccaccacactccacctcacgtctcttcttt
ctcagtgttttcctagcatgtgtagttttccatgcgaacaatagtgttca
tttatcgagttgaagcatttgaagtgagcagggacttgttttattggaat
ttcactaaatcttcagacttaagtcactagatcccttggaactggggtac
agacagctgagcccgtcagcgtgggggccaggaagacacttagggcctct
gaaagaacagcccatgctgtcactgttgagctctctctccatccccttgt
tttcttatttttattctcaagtatttatctcttaattccattgtaatgaa
agtttttaaaagtatttttaagctggtttttatctgtatatatgaaatcc
attgactcttttcacctgatattttaaaccataattttattgcttataat
atataatcctgatatattaaattctttgaaatttgcttacgcatacaatt
actctacaaaccgaaaagacttcctcataaaaaatattgcttagtgaggt
gacctgtattacattattatgtgtgtgttttagtaatgtaccagctataa
acatagatgtt
gaattcactctgctgagaaaagccaggctagatatttaatcagatattac
agaagcagttctgactggcaaaggggagacggaagcccatacctattgtg
taaacaaaaaatattaagatgctcaagtgtaggtgatagagaagtcagga
tgcttacaaatcatacaaagctagagtcgaaaaacttgttctgttaatga
ccagaaggcaaatattttgtgttactgggtgagagcggtctttccaaatg
cttcaagtagctgttttcaatgaaaggctaattgtctttcttttatattt
atttgtttttacagttcatatttaaacatgtgttcatttttattttgtgt
gtatgggtatttgtttttttctttttggcttttatttgtttgtttgtttg
tttgtttgtttgcctgcctgatgcctgcagaggccggaagagggcatcac
atcctctggaaggggagtgagctgccagaagggtgtgctgggagcagaat
ccaggccctctgcaggatcactgagtgttcttaactgctgagacatctct
gcggccctgaaatattttcacatttaaaaatgtgaaaacttttcttagtt
tgcaaactctaccgaagcaggcagtggctagatttggccacagacactag
ttttgcttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18927613_18928737
seq2: B6Ng01-041N14.b_49_1159

seq1  GAATTCTTATTCCATTTGGAGTTTATCTTTGTAACTCTGACAAGTGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTCCATTTGGAGTTTATCTTTGTAACTCTGACAAGTGGACA  50

seq1  TAGTTTTATCTTTATTCCAAATATTTTTCTAATTGTACCACTGTGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTATCTTTATTCCAAATATTTTTCTAATTGTACCACTGTGTTTAT  100

seq1  TGGATAATTTGTTATAATAAAACCTATCATTTTCTATAATGAATACCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAATTTGTTATAATAAAACCTATCATTTTCTATAATGAATACCTGC  150

seq1  TTAATAGTAAAAATAAATTAAAATTATTTCCACCCCCCCACACACACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGTAAAAATAAATTAAAATTATTTCCACCCCCCCACACACACATA  200

seq1  AAAAATCAAAAAACCCACATTAAAGTCTTTCATCAAAAATCTTGCACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAAAAAACCCACATTAAAGTCTTTCATCAAAAATCTTGCACCAA  250

seq1  AAAGAAATAATGCCACTTACTACAGTTTGATAAGATTAAGTATCATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAATGCCACTTACTACAGTTTGATAAGATTAAGTATCATTTAT  300

seq1  TAAAAGATGAAAATAAAGGAAACTGTTTCTTAATCAGAGAACAAGCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATGAAAATAAAGGAAACTGTTTCTTAATCAGAGAACAAGCTCCA  350

seq1  TCTGTACCTAAAAGACTCAGGATAAACACGCCCCGCCCCACCCCACCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCTAAAAGACTCAGGATAAACACGCCCCGCCCCACCCCACCCCC  400

seq1  CACCACGCTCTAGACGTTCTATCCGTGAGCTTTGCATTCCTTCTGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGCTCTAGACGTTCTATCCGTGAGCTTTGCATTCCTTCTGTTCAT  450

seq1  GTGCTGATGACGCTTTGTGTTCAAGACAAAGGCTGTGCTGTGGTTGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGATGACGCTTTGTGTTCAAGACAAAGGCTGTGCTGTGGTTGAAGG  500

seq1  TCAGGGCTGGGCTGCGATCTCCACCACACTCCACCTCACGTCTCTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTGGGCTGCGATCTCCACCACACTCCACCTCACGTCTCTTCTTT  550

seq1  CTCAGTGTTTTCCTAGCATGTGTAGTTTTCCATGCGAACAATAGTGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTTTTCCTAGCATGTGTAGTTTTCCATGCGAACAATAGTGTTCA  600

seq1  TTTATCGAGTTGAAGCATTTGAAGTGAGCAGGGACTTGTTTTATTGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCGAGTTGAAGCATTTGAAGTGAGCAGGGACTTGTTTTATTGGAAT  650

seq1  TTCACTAAATCTTCAGACTTAAGTCACTAGATCCCTTGGAACTGGGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAAATCTTCAGACTTAAGTCACTAGATCCCTTGGAACTGGGGTAC  700

seq1  AGACAGCTGAGCCCGTCAGCGTGGGGGCCAGGAAGACACTTAGGGCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTGAGCCCGTCAGCGTGGGGGCCAGGAAGACACTTAGGGCCTCT  750

seq1  GAAAGAACAGCCCATGCTGTCACTGTTGAGCTCTCTCTCCATCCCCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACAGCCCATGCTGTCACTGTTGAGCTCTCTCTCCATCCCCTTGT  800

seq1  TTTCTTATTTTTATTCTCAAGTATTTAATCTCTTAATTCCATTGTAAATG  850
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  TTTCTTATTTTTATTCTCAAGTATTT-ATCTCTTAATTCCATTGT-AATG  848

seq1  AAAGTTTTTAAAAGTATTTTTAAGCTGGTTTTTATCTGTATATATGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTTAAAAGTATTTTTAAGCTGGTTTTTATCTGTATATATGAAAT  898

seq1  CCATTGACTCTTTTCACCTGATATTTTAAAACATAATTTTATTGCTTATA  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCATTGACTCTTTTCACCTGATATTTTAAACCATAATTTTATTGCTTATA  948

seq1  ATATATAATCCTGATATATT-AATTCTTTGAAATTTGCTTAACGCATACA  999
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  ATATATAATCCTGATATATTAAATTCTTTGAAATTTGCTT-ACGCATACA  997

seq1  ATTTACTCTAACAAACCGAAAAGACTTCCTCATAAAATATATTGCTTTAG  1049
      | ||||||| ||||||||||||||||||||||||||| ||||||| ||||
seq2  A-TTACTCT-ACAAACCGAAAAGACTTCCTCATAAAAAATATTGC-TTAG  1044

seq1  TGAGGTGACCTGTAATTACATTATTAATTGTGTGTTGTTTCTAGTAAATG  1099
      ||||||||||||| ||||||||||||  |||||| ||||| |||| ||||
seq2  TGAGGTGACCTGT-ATTACATTATTA--TGTGTG-TGTTT-TAGT-AATG  1088

seq1  TAACCAGCTATTAAACATAGAATGTT  1125
      | |||||||| ||||||||| |||||
seq2  T-ACCAGCTA-TAAACATAG-ATGTT  1111

seq1: chr10_19016588_19017246
seq2: B6Ng01-041N14.g_69_728 (reverse)

seq1  ATAAGC-AAACTAGTGTCTGTGGCCAAATCTAGCCACTGCCTGCTTCGGT  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAAACTAGTGTCTGTGGCCAAATCTAGCCACTGCCTGCTTCGGT  50

seq1  AGAGTTTGCAAACTAAGAAAAGTTTTCACATTTTTAAATGTGAAAATATT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGCAAACTAAGAAAAGTTTTCACATTTTTAAATGTGAAAATATT  100

seq1  TCAGGGCCGCAGAGATGTCTCAGCAGTTAAGAACACTCAGTGATCCTGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCCGCAGAGATGTCTCAGCAGTTAAGAACACTCAGTGATCCTGCA  150

seq1  GAGGGCCTGGATTCTGCTCCCAGCACACCCTTCTGGCAGCTCACTCCCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCTGGATTCTGCTCCCAGCACACCCTTCTGGCAGCTCACTCCCCT  200

seq1  TCCAGAGGATGTGATGCCCTCTTCCGGCCTCTGCAGGCATCAGGCAGGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGATGTGATGCCCTCTTCCGGCCTCTGCAGGCATCAGGCAGGCA  250

seq1  AACAAACAAACAAACAAACAAACAAATAAAAGCCAAAAAGAAAAAAACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAACAAACAAATAAAAGCCAAAAAGAAAAAAACAA  300

seq1  ATACCCATACACACAAAATAAAAATGAACACATGTTTAAATATGAACTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATACACACAAAATAAAAATGAACACATGTTTAAATATGAACTGT  350

seq1  AAAAACAAATAAATATAAAAGAAAGACAATTAGCCTTTCATTGAAAACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAATAAATATAAAAGAAAGACAATTAGCCTTTCATTGAAAACAG  400

seq1  CTACTTGAAGCATTTGGAAAGACCGCTCTCACCCAGTAACACAAAATATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGAAGCATTTGGAAAGACCGCTCTCACCCAGTAACACAAAATATT  450

seq1  TGCCTTCTGGTCATTAACAGAACAAGTTTTTCGACTCTAGCTTTGTATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTGGTCATTAACAGAACAAGTTTTTCGACTCTAGCTTTGTATGA  500

seq1  TTTGTAAGCATCCTGACTTCTCTATCACCTACACTTGAGCATCTTAATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGCATCCTGACTTCTCTATCACCTACACTTGAGCATCTTAATAT  550

seq1  TTTTTGTTTACACAATAGGTATGGGCTTCCGTCTCCCCTTTGCCAGTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTACACAATAGGTATGGGCTTCCGTCTCCCCTTTGCCAGTCAG  600

seq1  AACTGCTTCTGTAATATCTGATTAAATATCTAGCCTGGCTTTTCTCAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTCTGTAATATCTGATTAAATATCTAGCCTGGCTTTTCTCAGCA  650

seq1  GAGTGAATTC  659
      ||||||||||
seq2  GAGTGAATTC  660