BAC Information

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BAC

Clone NameB6Ng01-042E22
Chromosome10 (Build37)
Map Location 112,965,385 - 113,106,295
singlet/doubletdoublet
Overlap geneLOC100042655
Upstream geneLOC100042639, 4921506J03Rik
Downstream geneLOC100042666, Trhde
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042E22.bB6Ng01-042E22.g
ACCDH868723DH868724
length1,1031,161
definitionDH868723|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E22, 5' end.DH868724|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,965,385 - 112,966,507)(113,105,132 - 113,106,295)
sequence
gaattctgggaaagttgatcatttcttatggtaaaatgggatcatgaaaa
ctgtggcggaggagaatccgttttcactgattggaatactttgctaagat
ataatccctgcagctgggacaaacgctgctctgcatcacaataaatctag
ctcagctgacacactaaagatgagaggaacctgagtccctgcatcattag
ttatttagcaacttcaccagctaccttactgctgcacttactgctgtatt
agataactaattagtttaagaattttgacatgtacttccttctttaaaag
tatgaattgcaaacgtattctgagtgatataaataacctctttgaagaca
gaatacttcttagacagaagtgttacttcacagcagtgagggcatcatta
ctatgctccttggatcatttttgatagataaagtataagatttaactcac
tagttaaataataaagagaagggaatcttcttgctcagaatagaatctca
tgtaagcaatctcctcctggaaccttgagctatgtttccagagacaaaaa
ataaatacattgcctagaaaaaagaagaatcaaggtagacaggtgctttt
gtgtgatatacctggaaatttatctcctgtttctatctcttcagttggtt
caacttttcagaaatttattagtaagctggaatgcctgttagcagtccaa
atgaacttgacaatcttattaattacaatacaatttagaaatgttaaaaa
cacatttttttccctgaatagaacagcaatggcttgtgctttaagatcga
ggattgacaaatgggacctcatgaaactgcaaagcttctgcaaagcaaaa
gacaccgtcaataagacaaaaaggccaccaacagattgggaaaggatctt
tacctatcttaaatcagatagggaactaatatccaatatatataaagaac
tcaagaggtggattccagaaatcaaatagccccttaaaagatggggctca
gagctgacaaagattctcacccgagataccgaaagctgagaacactgaaa
atgtcatatcctatcatcagagaaatgcatcaaacatcctgagattccat
ctc
gaattccacacccctaaggccgttatccccccaaaaacccctagcttttg
agcctcttggccgaaatccgtcatctcctgtgtgggatgcatgttggtct
ggagctcagtcattaaactgcctcatatgattacagcaagatggattctc
atgtttctttgggtgctctctcactcctgagaccagaatgagggtccccg
aaaggggctcttacatcactaggctgatatgaagtattaaaataaaaatt
taaatatttccttcttttggttctatactataaatagatgggaattaaaa
ccttctccctgatatattcttaaattttactagatgtttcattggataga
tcaatattttattccatccaattttatagagtgaacaatgtatactggta
gaaattgcaatacaccacttagtgttcattctcttaatggttcaccacaa
atctcttaattctcttttcactcttttgcttatttttatttattttttga
atttgagattttttttaaataatcactttgcttttcttcaaattgtattc
tgaaactcaccatcctccccccaagatacttgcttttctaaaatatataa
catctatagttgtggatattttggggtcacttagtattttttgacaaatt
atagacattatttctatatgttctgatgacataagagcctgttagaattc
tttctttgtatcttgttttttcccctttaaattgcattgaaggtcttttt
tcctgttattatttaataatttcactacctatgaagtagttcaccactac
tcttgtattaatatgtactcatcacaattaaagtttttattgaggaaaaa
cattattctgaagatgttgaaacaagacagggtatttatttgaacagctt
taagaatgaagtaccattgggttgggtgcaaatatctgtgtctgactctt
cagctgcttggtgggtctttcagagggcagtcatgctaggtccctttttg
tggggcactcatattcttcagtaaaagagtcaacccttgggactttccct
tggagctggatcccacatttgggctgtcgctgaacttctttttctcagga
atcttattccatttcatccctgtatctttcattcagaacagattgagtcg
agaagtgctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_112965385_112966507
seq2: B6Ng01-042E22.b_45_1147

seq1  GAATTCTGGGAAAGTTGATCATTTCTTATGGTAAAATGGGATCATGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAAAGTTGATCATTTCTTATGGTAAAATGGGATCATGAAAA  50

seq1  CTGTGGCGGAGGAGAATCCGTTTTCACTGATTGGAATACTTTGCTAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCGGAGGAGAATCCGTTTTCACTGATTGGAATACTTTGCTAAGAT  100

seq1  ATAATCCCTGCAGCTGGGACAAACGCTGCTCTGCATCACAATAAATCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCCTGCAGCTGGGACAAACGCTGCTCTGCATCACAATAAATCTAG  150

seq1  CTCAGCTGACACACTAAAGATGAGAGGAACCTGAGTCCCTGCATCATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGACACACTAAAGATGAGAGGAACCTGAGTCCCTGCATCATTAG  200

seq1  TTATTTAGCAACTTCACCAGCTACCTTACTGCTGCACTTACTGCTGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGCAACTTCACCAGCTACCTTACTGCTGCACTTACTGCTGTATT  250

seq1  AGATAACTAATTAGTTTAAGAATTTTGACATGTACTTCCTTCTTTAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTAATTAGTTTAAGAATTTTGACATGTACTTCCTTCTTTAAAAG  300

seq1  TATGAATTGCAAACGTATTCTGAGTGATATAAATAACCTCTTTGAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTGCAAACGTATTCTGAGTGATATAAATAACCTCTTTGAAGACA  350

seq1  GAATACTTCTTAGACAGAAGTGTTACTTCACAGCAGTGAGGGCATCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTCTTAGACAGAAGTGTTACTTCACAGCAGTGAGGGCATCATTA  400

seq1  CTATGCTCCTTGGATCATTTTTGATAGATAAAGTATAAGATTTAACTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTCCTTGGATCATTTTTGATAGATAAAGTATAAGATTTAACTCAC  450

seq1  TAGTTAAATAATAAAGAGAAGGGAATCTTCTTGCTCAGAATAGAATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAATAATAAAGAGAAGGGAATCTTCTTGCTCAGAATAGAATCTCA  500

seq1  TGTAAGCAATCTCCTCCTGGAACCTTGAGCTATGTTTCCAGAGACAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCAATCTCCTCCTGGAACCTTGAGCTATGTTTCCAGAGACAAAAA  550

seq1  ATAAATACATTGCCTAGAAAAAAGAAGAATCAAGGTAGACAGGTGCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACATTGCCTAGAAAAAAGAAGAATCAAGGTAGACAGGTGCTTTT  600

seq1  GTGTGATATACCTGGAAATTTATCTCCTGTTTCTATCTCTTCAGTTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATATACCTGGAAATTTATCTCCTGTTTCTATCTCTTCAGTTGGTT  650

seq1  CAACTTTTCAGAAATTTATTAGTAAGCTGGAATGCCTGTTAGCAGTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTCAGAAATTTATTAGTAAGCTGGAATGCCTGTTAGCAGTCCAA  700

seq1  ATGAACTTGACAATCTTATTAATTACAATACAATTTAGAAATGTTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTGACAATCTTATTAATTACAATACAATTTAGAAATGTTAAAAA  750

seq1  CACATTTTTTTCCCTGAATAGAACAGCAATGGCTTGTGCTTTAAGATCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTTTTCCCTGAATAGAACAGCAATGGCTTGTGCTTTAAGATCGA  800

seq1  GGATTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAAGCAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAAGCAAAA  850

seq1  GACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTT  900

seq1  TACCTATCTTAAATCAGATAGGGAACTAATATCCAATATATATAAAGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATCTTAAATCAGATAGGGAACTAATATCCAATATATATAAAGAAC  950

seq1  TCAAGAGGGTGGATTCCAGAAAATCAAATAGCCCCCTTAAAAGATGGGGC  1000
      |||||| |||||||||||| ||||||||||| ||||||||||||||||||
seq2  TCAAGA-GGTGGATTCCAG-AAATCAAATAG-CCCCTTAAAAGATGGGGC  997

seq1  TCAGAGCTGAACAAAGAATTCTCACCCGAGGAATACCGAAAGGCTGAGAA  1050
      ||||||||| |||||| |||||||||||||  ||||||||| |||||| |
seq2  TCAGAGCTG-ACAAAG-ATTCTCACCCGAG--ATACCGAAA-GCTGAG-A  1041

seq1  ACACCTGAAAAAATGTTCAATATCCTTAATCATCAGAGAAATGCAAATCA  1100
      ||| |||  |||||||   |||||||  ||||||||||||||||  ||||
seq2  ACA-CTG--AAAATGT--CATATCCT--ATCATCAGAGAAATGC--ATCA  1082

seq1  AAACAACCCTGAGATTCCATCTC  1123
      ||   | ||||||||||||||||
seq2  AA--CATCCTGAGATTCCATCTC  1103

seq1: chr10_113105132_113106295
seq2: B6Ng01-042E22.g_64_1224 (reverse)

seq1  ACAGCACATCTCTGACTCATACTTGTTCCTGACTGAAAGAATTACAGGGA  50
      ||||||| |||| |||||| |  |||| |||| |||||||  ||||||||
seq2  ACAGCACTTCTC-GACTCA-ATCTGTT-CTGAATGAAAGA--TACAGGGA  45

seq1  TGGAAATGG-ATAGGA-TCCTGAGGAAAAGAAGGTTCAGCGACAGGCCCA  98
      | ||||||| ||| || ||||||| ||||||| |||||||||||| || |
seq2  T-GAAATGGAATAAGATTCCTGAGAAAAAGAA-GTTCAGCGACAGCCCAA  93

seq1  AAGTGGGATCCAGCT-CAAGGGGAGGTCCCAAGGGTTGACTCTATTACTG  147
      | ||||||||||||| |||||| | |||||||||||||||||| ||||||
seq2  ATGTGGGATCCAGCTCCAAGGGAAAGTCCCAAGGGTTGACTCTTTTACTG  143

seq1  -AGGATATGGAGTG-CTCACAAAAAGGGACCTAGCATGACTGCCCTCTGA  195
       || |||| ||||| | |||||||||||||||||||||||||||||||||
seq2  AAGAATAT-GAGTGCCCCACAAAAAGGGACCTAGCATGACTGCCCTCTGA  192

seq1  AAGACCCACCAAGCAGCTGAAAGAGTCAGACACAGATATTTGCACCCAA-  244
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  AAGACCCACCAAGCAGCTG-AAGAGTCAGACACAGATATTTGCACCCAAC  241

seq1  CCAATGGTACTTCATTCTTAAAGCTGTTCAAATAAATACCCTGTCTTGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGTACTTCATTCTTAAAGCTGTTCAAATAAATACCCTGTCTTGTT  291

seq1  TCAACATCTTCAGAATAATGTTTTTCCTCAATAAAAACTTTAATTGTGAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATCTTCAGAATAATGTTTTTCCTCAATAAAAACTTTAATTGTGAT  341

seq1  GAGTACATATTAATACAAGAGTAGTGGTGAACTACTTCATAGGTAGTGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACATATTAATACAAGAGTAGTGGTGAACTACTTCATAGGTAGTGAA  391

seq1  ATTATTAAATAATAACAGGAAAAAAGACCTTCAATGCAATTTAAAGGGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAATAATAACAGGAAAAAAGACCTTCAATGCAATTTAAAGGGGA  441

seq1  AAAAACAAGATACAAAGAAAGAATTCTAACAGGCTCTTATGTCATCAGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAGATACAAAGAAAGAATTCTAACAGGCTCTTATGTCATCAGAA  491

seq1  CATATAGAAATAATGTCTATAATTTGTCAAAAAATACTAAGTGACCCCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGAAATAATGTCTATAATTTGTCAAAAAATACTAAGTGACCCCAA  541

seq1  AATATCCACAACTATAGATGTTATATATTTTAGAAAAGCAAGTATCTTGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCACAACTATAGATGTTATATATTTTAGAAAAGCAAGTATCTTGG  591

seq1  GGGGAGGATGGTGAGTTTCAGAATACAATTTGAAGAAAAGCAAAGTGATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGATGGTGAGTTTCAGAATACAATTTGAAGAAAAGCAAAGTGATT  641

seq1  ATTTAAAAAAAATCTCAAATTCAAAAAATAAATAAAAATAAGCAAAAGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAAATCTCAAATTCAAAAAATAAATAAAAATAAGCAAAAGAG  691

seq1  TGAAAAGAGAATTAAGAGATTTGTGGTGAACCATTAAGAGAATGAACACT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGAATTAAGAGATTTGTGGTGAACCATTAAGAGAATGAACACT  741

seq1  AAGTGGTGTATTGCAATTTCTACCAGTATACATTGTTCACTCTATAAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTGTATTGCAATTTCTACCAGTATACATTGTTCACTCTATAAAAT  791

seq1  TGGATGGAATAAAATATTGATCTATCCAATGAAACATCTAGTAAAATTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAATAAAATATTGATCTATCCAATGAAACATCTAGTAAAATTTA  841

seq1  AGAATATATCAGGGAGAAGGTTTTAATTCCCATCTATTTATAGTATAGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATATCAGGGAGAAGGTTTTAATTCCCATCTATTTATAGTATAGAA  891

seq1  CCAAAAGAAGGAAATATTTAAATTTTTATTTTAATACTTCATATCAGCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGAAGGAAATATTTAAATTTTTATTTTAATACTTCATATCAGCCT  941

seq1  AGTGATGTAAGAGCCCCTTTCGGGGACCCTCATTCTGGTCTCAGGAGTGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTAAGAGCCCCTTTCGGGGACCCTCATTCTGGTCTCAGGAGTGA  991

seq1  GAGAGCACCCAAAGAAACATGAGAATCCATCTTGCTGTAATCATATGAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCACCCAAAGAAACATGAGAATCCATCTTGCTGTAATCATATGAGG  1041

seq1  CAGTTTAATGACTGAGCTCCAGACCAACATGCATCCCACACAGGAGATGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAATGACTGAGCTCCAGACCAACATGCATCCCACACAGGAGATGA  1091

seq1  CGGATTTCGGCCAAGAGGCTCAAAAGCTAGGGGTTTTTGGGGGGATAACG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTTCGGCCAAGAGGCTCAAAAGCTAGGGGTTTTTGGGGGGATAACG  1141

seq1  GCCTTAGGGGTGTGGAATTC  1164
      ||||||||||||||||||||
seq2  GCCTTAGGGGTGTGGAATTC  1161