BAC Information

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BAC

Clone NameB6Ng01-042N12
Chromosome10 (Build37)16 (Build37)
Map Location 104,053,978 - 104,054,84070,462,285 - 70,463,425
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042N12.bB6Ng01-042N12.g
ACCDH869092DH869093
length5401,138
definitionDH869092|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N12, 5' end.DH869093|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,978 - 104,054,840)(70,462,285 - 70,463,425)
sequence
gaattctttgtttatctctgagagagctaaaaccatccagtggaaaaaaa
gacagcattttcaacaaatggtgctggcactactggtggttatcatgtag
aagaatgcaaattgatccattcctatctccttgtactaaggtcaaatcta
agtggatcaaggaactccacataaaaccagagacactgaaacttatagag
gagaaagtggggaaaagcctcgaagatattggcacaggggaaacattcct
gaatagaacagcaatggcttgtgctgtaagattgagaattgacaaatggg
acctcataaaatttcaaagcttctgcaagtcaaaagataccgtcaataag
acaaaaaggtcaccaacagattgggaaaggatctttacctatcctaaatc
agataggggactaatatccaatatatataaagaactcaagaaggtggact
ccagaaaatcaaataaccccaatgttagcctttataagagttgtcttcta
ctatgttcacagcagccttatttataatagccagaagctg
gaattccatcttgacattcagcggcttcacacttaacactgggaaaataa
tggatgcaagtaaggccctctgattcttcagaacttagacctcccaagca
agtattgctctccatatgttagaagcaaaaattgttcttagtatcaaaga
gggggatctagagaattgtgtaaaatgtactgtgctaaaaatagcttata
atataaattgtgtgaaaaagcacttgccacacaaatatggcgacctaagg
ttgaattctagaaaccatgtaaaggctgggtgttctggcacaaatctatg
cccatccctagtggaggatgacagaaacagatggatccgggttcttactg
gcttgttagctagcttcatggtggtcagggctagtgagaattccagtttc
aaataactaagtaaaggtttaccaagacatctatgccaacctctggcatc
tacatgcctgtgggcatgcaggtgtgttgttctatacatgtgtatacaca
cagacatacacacacacacacacacacacacacacacaaatagtgcctaa
ggaatggcatagaaggttgaacccttgccttcacacatacttggatgcaa
ccataaatatgttttactttccgtggccttctctgttgctcatatatgct
gcttgacagccagtattcgtttcaagtccaacttactaatggttagacgc
tactacttgaatctttagccttttgggaagacttttgtttcatgcaaaat
ttgaatgtgtgtaattgcaaaataattttctggcccaactacaccttaaa
ggggtgagaacaactttgcctcccctacttcctatcatagctcagtgagc
aaataatataagttcatggataaaagcacttaatatgttctggaccctct
gaaaatggtagttttctcttctttcttcatccagtgttcatcttcaatga
acgagctgagtcacattaacaagttaagaaatttcgtgactgacagtatt
tcatgctgtgtgttgtttggagttcatgctgtggaggagtctgaaattgt
tcacagtggatagttcagcctgtcagtaaaactgaaaatctacaaactga
ccaatggacctttcgaagcttggaaaagtatttgaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053978_104054840
seq2: B6Ng01-042N12.b_69_585 (reverse)

seq1  CAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCATGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGGTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCCAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTT  300
                                              |||     ||
seq2  ----------------------------------------CAG----CTT  6

seq1  TTGATTTGCATTTCCCTGATGATTAAGGATG--TTGAACATTTTTTCAGG  348
       ||    ||  ||     || | ||||| ||   |||||||  |      
seq2  CTG----GCTATT-----ATAAATAAGGCTGCTGTGAACATAGT------  41

seq1  TGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTC  398
                                ||  || || ||||   | |   |
seq2  --------------------------AGAAGACAACTCTT--ATAAAGGC  63

seq1  TGAGCCCCATTTTTTAATAGGGTTATTTGATTTTCTGAAGTCCACCTTCT  448
      | |    |||       | |||||||||||||||||| ||||||||||||
seq2  TAA----CAT-------TGGGGTTATTTGATTTTCTGGAGTCCACCTTCT  102

seq1  TGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAATTAGGATAG  498
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  TGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAG  152

seq1  GTAAAGATCCTTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGT  548
      |||||||||||||| |||||||||||||  ||||||||||||||||||||
seq2  GTAAAGATCCTTTCCCAATCTGTTGGTGACCTTTTTGTCTTATTGACGGT  202

seq1  GTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCAA  598
       ||||||| ||||||||||||||| |||||||||||||||||||| ||||
seq2  ATCTTTTGACTTGCAGAAGCTTTGAAATTTTATGAGGTCCCATTTGTCAA  252

seq1  CTCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCC  648
       |||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATGTTTCC  302

seq1  CCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAGTTT  698
      ||||| || |||||||||||||||||||| ||||| ||||||||||||||
seq2  CCTGTGCCAATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTT  352

seq1  CAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTTACCT  748
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  CAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGACCT  402

seq1  TAGTACAAGGAGATAGTAATTGATCAATTCACAATCTTCTACATGATAAC  798
      |||||||||||||||| ||| ||||||||  || ||||||||||||||||
seq2  TAGTACAAGGAGATAGGAATGGATCAATTTGCATTCTTCTACATGATAAC  452

seq1  AGCCAGTTGTGCCAGCATGATTTGTTGAAAATGCTGTCTTTTTTTCCACT  848
        ||||| |||||||||  |||||||||||||||||||||||||||||||
seq2  CACCAGTAGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCCACT  502

seq1  GGATAGTTTTAGCTC  863
      |||| ||||||||||
seq2  GGATGGTTTTAGCTC  517

seq1: chr16_70462285_70463425
seq2: B6Ng01-042N12.g_68_1205

seq1  GAATTCCATCTTGACATTCAGCGGCTTCACACTTAACACTGGGAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTGACATTCAGCGGCTTCACACTTAACACTGGGAAAATAA  50

seq1  TGGATGCAAGTAAGGCCCTCTGATTCTTCAGAACTTAGACCTCCCAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCAAGTAAGGCCCTCTGATTCTTCAGAACTTAGACCTCCCAAGCA  100

seq1  AGTATTGCTCTCCATATGTTAGAAGCAAAAATTGTTCTTAGTATCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGCTCTCCATATGTTAGAAGCAAAAATTGTTCTTAGTATCAAAGA  150

seq1  GGGGGATCTAGAGAATTGTGTAAAATGTACTGTGCTAAAAATAGCTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATCTAGAGAATTGTGTAAAATGTACTGTGCTAAAAATAGCTTATA  200

seq1  ATATAAATTGTGTGAAAAAGCACTTGCCACACAAATATGGCGACCTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTGTGTGAAAAAGCACTTGCCACACAAATATGGCGACCTAAGG  250

seq1  TTGAATTCTAGAAACCATGTAAAGGCTGGGTGTTCTGGCACAAATCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCTAGAAACCATGTAAAGGCTGGGTGTTCTGGCACAAATCTATG  300

seq1  CCCATCCCTAGTGGAGGATGACAGAAACAGATGGATCCGGGTTCTTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCTAGTGGAGGATGACAGAAACAGATGGATCCGGGTTCTTACTG  350

seq1  GCTTGTTAGCTAGCTTCATGGTGGTCAGGGCTAGTGAGAATTCCAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTAGCTAGCTTCATGGTGGTCAGGGCTAGTGAGAATTCCAGTTTC  400

seq1  AAATAACTAAGTAAAGGTTTACCAAGACATCTATGCCAACCTCTGGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTAAGTAAAGGTTTACCAAGACATCTATGCCAACCTCTGGCATC  450

seq1  TACATGCCTGTGGGCATGCAGGTGTGTTGTTCTATACATGTGTATACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCTGTGGGCATGCAGGTGTGTTGTTCTATACATGTGTATACACA  500

seq1  CAGACATACACACACACACACACACACACACACACACAAATAGTGCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATACACACACACACACACACACACACACACACAAATAGTGCCTAA  550

seq1  GGAATGGCATAGAAGGTTGAACCCTTGCCTTCACACATACTTGGATGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGCATAGAAGGTTGAACCCTTGCCTTCACACATACTTGGATGCAA  600

seq1  CCATAAATATGTTTTACTTTCCGTGGCCTTCTCTGTTGCTCATATATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAATATGTTTTACTTTCCGTGGCCTTCTCTGTTGCTCATATATGCT  650

seq1  GCTTGACAGCCAGTATTCGTTTCAAGTCCAACTTACTAATGGTTAGACGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACAGCCAGTATTCGTTTCAAGTCCAACTTACTAATGGTTAGACGC  700

seq1  TACTACTTGAATCTTTAGCCTTTTGGGAAGACTTTTGTTTCATGCAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTTGAATCTTTAGCCTTTTGGGAAGACTTTTGTTTCATGCAAAAT  750

seq1  TTGAATGTGTGTAATTGCAAAATAATTTTCTGGCCCAACTACACCTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTGTGTAATTGCAAAATAATTTTCTGGCCCAACTACACCTTAAA  800

seq1  GGGGTGAGAACAACTTTGCCTCCCCTACTTCCTATCATAGCTCAGTGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGAACAACTTTGCCTCCCCTACTTCCTATCATAGCTCAGTGAGC  850

seq1  AAATAATATAAGTTCATGGATAAAAGCACTTAATATGTTCTGGACCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATAAGTTCATGGATAAAAGCACTTAATATGTTCTGGACCCTCT  900

seq1  GAAAATGGTAGTTTTCTCTTCTTTCTTCATCCAGTGTTCATCTTCAATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGTAGTTTTCTCTTCTTTCTTCATCCAGTGTTCATCTTCAATGA  950

seq1  ACGAGCTGAGTCACATTAACAAGTTAAGAAATATCGTGACTGACAGTTAT  1000
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  ACGAGCTGAGTCACATTAACAAGTTAAGAAATTTCGTGACTGACAG-TAT  999

seq1  TTCATGCTGTGTGTTGTTTGGAGTTCATGCTGTGGAGGAGTCTGAAA-TG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCATGCTGTGTGTTGTTTGGAGTTCATGCTGTGGAGGAGTCTGAAATTG  1049

seq1  TTCACAGT-GATAGTTCAGCCTGTCAGTTAAAACCAGAAAATATTACAAA  1098
      |||||||| |||||||||||||||||||  ||| | ||||||  ||| ||
seq2  TTCACAGTGGATAGTTCAGCCTGTCAGT--AAAACTGAAAAT-CTAC-AA  1095

seq1  ACTGACCACT-GACCTTTCGAGAAGCTTGGAAAAGTA-TTGAAGG  1141
      |||||||| | ||||||||  |||||||||||||||| |||||||
seq2  ACTGACCAATGGACCTTTC--GAAGCTTGGAAAAGTATTTGAAGG  1138